NUGET :: Nucleotide Usage in Genomes with Tools

NUGET

Molecule type:
Sequence status:

All Chromosome Plasmid Plastid Mitochondrion Chloroplast
Both complete and incomplete Completed genome only

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Current Taxon Level (No. of records underneath):
root (3543)
Sub Taxons (No. of records underneath):
cellular organisms (1946)
Viruses (1525)
Viroids (36)
other sequences (36)

»	NUGET stats: current NCBI RefSeq release date 1969-12-31 Total number of unique taxons (organisms): 2836
»	What is NUGET? NUGET is a comparative genomics tool that provides clustering software for comparing the usage frequencies of oligo-nucleotide seqeunces among selected genomes. Frequency data of up to 4-letter words (tetra-nucleotide) are calculated from the non-redundant genomic DNA sequences that are available in the NCBI RefSeq database.

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Total = 3543	Checked	Checked	All selected	Selected genomes
Total selected: 0 (* denotes selected )	All (on this page)	All (on this page)	All selected	Selected genomes

Accession No.		Species Name	Sequence Description	Molecular Type	Date	Total bps
	NC_003888.3	*Streptomyces coelicolor A3(2)*	Streptomyces coelicolor A3(2), complete genome	genomic	2005-05-11	8667507	View
	NC_005089.1	*Mus musculus*	Mus musculus mitochondrion, complete genome	mitochondrion	2005-05-11	16299	View
	NC_005946.1	*Frog virus 3*	Frog virus 3, complete genome	genomic	2005-05-11	105903	View
	NC_006930.1	*Eubalaena australis*	Eubalaena australis mitochondrion, complete genome	mitochondrion	2005-05-11	16385	View
	NC_003407.1	*Rana tigrina ranavirus*	Rana tigrina ranavirus, complete genome	genomic	2005-05-11	105057	View
	NC_004954.1	*Micrococcus sp. 28*	Micrococcus sp. 28 plasmid pSD10, complete sequence	plasmid	2005-05-11	50709	View
	Multi-IDs	*Sri Lankan cassava mosaic virus*	(Multiple sequences)	Misc	2005-05-11	5466	View
	NC_004566.1	*Lactobacillus fermentum*	Lactobacillus fermentum plasmid pLME300, complete sequence	plasmid	2005-05-11	19389	View
	NC_004947.1	*Lactobacillus fermentum*	Lactobacillus fermentum plasmid pKC5b, complete sequence	plasmid	2005-05-11	4392	View
	Multi-IDs	*Tamana bat virus*	(Multiple sequences)	Misc	2005-05-11	10053	View
	Multi-IDs	*Bacteriophage phi-12*	(Multiple sequences)	Misc	2005-05-11	13171	View
	NC_004074.1	*Tioman virus*	Tioman virus, complete genome	genomic	2005-05-11	15522	View
	NC_004148.2	*Human metapneumovirus*	Human metapneumovirus, complete genome	genomic	2005-05-11	13335	View
	NC_001659.1	*African swine fever virus*	African swine fever virus, complete genome	genomic	2005-05-11	170101	View
	NC_002808.1	*Echinosorex gymnura*	Echinosorex gymnura mitochondrion, complete genome	mitochondrion	2005-05-11	17087	View
	NC_002978.6	*Wolbachia endosymbiont of Drosophila melanogaster*	Wolbachia endosymbiont of Drosophila melanogaster, complete genome	genomic	2005-05-11	1267782	View
	NC_004462.1	*Bacteriophage IN93*	Bacteriophage IN93, complete genome	genomic	2005-05-11	19603	View
	NC_003041.1	*Volemys kikuchii*	Volemys kikuchii mitochondrion, complete genome	mitochondrion	2005-05-11	16312	View
	NC_001875.2	*Orgyia pseudotsugata multicapsid nucleopolyhedrovirus*	Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome	genomic	2005-05-11	131993	View
	Multi-IDs	*Helminthosporium victoriae 145S virus*	(Multiple sequences)	Misc	2005-05-11	12481	View
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