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Dynamic Probe Design
Introduction
Available Probe Sets
Custom Design
New probe set from NCBI microbial genomes
Unlisted or propriety genomes
HM-SVM Algorithm
Introduction
Download HM-SVM
Microbial Transcriptome Profiles
Transcriptome Profile Detected by Direct RNA Labeling
Dynamic Transcriptome Profile Analysis
Streptococcus mutans
UA159
Porphyromonas gingivalis
W83
RNAseq Profiles
Minimal Medium
TSB Medium
BAPHK Medium
All Three
Tiling Array Profiles
Browse Transcriptome Profile
Structural RNA Classification
Search Transcriptome Profile
Search Segment
Comparative Transcriptomics
Porphyromonas gingivalis
strains W83 vs ATCC33277
Links
Forsyth Bioinformatics
The Forsyth Institute
NIDCR
BROP
HOMD
NCBI
Contact Us
Project Team
General Information
Tools for Drawing Circular Transcriptome Maps
Tiling Microarray Probe Sets
Request Probe Sets
Direct RNA Labeling
HM-SVM Profiling
Transcriptome Data
Porphyromonas gingivalis
W83
Tiling Array Profiles
View profiles
RNAseq Profiles
Transcriptome Viewer
JBrowse Transcriptome Viewer
Streptococcus mutans
UA159
Tiling Array Profiles
View in Genome Viewer
View in Transcriptome Viewer
RNAseq Profiles
JBrowse Transcriptome Viewer
Supplemental Data
Høvik et al (2012) Comprehensive transcriptome analysis of the periodontopathogenic bacterium
Porphyromonas gingivalis
W83
Khan et al (2016) Comprehensive transcriptome profiles of
Streptococcus mutans
UA159 map core streptococcal competence genes
Khan et al (2017) A positive feedback loop mediated by Sigma X enhances expression of the streptococcal regulator ComR
Porphyromonas gingivalis
W83
Browse Transcriptome Viewer
Search Transcriptome Profiles
Search Segments
Copyright 2007-2008 The Forsyth Institute
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