q2_diversity : beta_group

	PERMANOVA results
method name	PERMANOVA
test statistic name	pseudo-F
sample size	40
number of groups	14
test statistic	5.90111
p-value	0.001
number of permutations	999

Pairwise permanova results

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		Sample size	Permutations	pseudo-F	p-value	q-value
Group 1	Group 2
Run1 BTO Loading	Run1 BTO No_loading	6	999	2.406288	0.100	0.125667
	Run1 Commercial Loading	6	999	1.255842	0.302	0.315885
	Run1 Commercial No_loading	6	999	2.149295	0.193	0.204221
	Run1 HA Loading	6	999	3.771739	0.112	0.125667
	Run1 HA No_loading	6	999	3.995157	0.095	0.125667
	Run1 plaque_inoculum plaque_inoculum	5	999	6.200460	0.095	0.125667
	Run2 BTO Loading	6	999	8.956435	0.093	0.125667
	Run2 BTO No_loading	6	999	5.147708	0.089	0.125667
	Run2 Commercial Loading	6	999	9.354197	0.100	0.125667
	Run2 Commercial No_loading	6	999	4.706280	0.092	0.125667
	Run2 HA Loading	6	999	7.298546	0.095	0.125667
	Run2 HA No_loading	6	999	8.483639	0.095	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	11.301723	0.132	0.141318
Run1 BTO No_loading	Run1 Commercial Loading	6	999	4.211084	0.102	0.125667
	Run1 Commercial No_loading	6	999	0.880204	0.609	0.615767
	Run1 HA Loading	6	999	4.087882	0.103	0.125667
	Run1 HA No_loading	6	999	4.531336	0.078	0.125667
	Run1 plaque_inoculum plaque_inoculum	5	999	6.455724	0.097	0.125667
	Run2 BTO Loading	6	999	9.047597	0.090	0.125667
	Run2 BTO No_loading	6	999	4.272018	0.102	0.125667
	Run2 Commercial Loading	6	999	9.297303	0.085	0.125667
	Run2 Commercial No_loading	6	999	3.896127	0.104	0.125667
	Run2 HA Loading	6	999	6.534825	0.111	0.125667
	Run2 HA No_loading	6	999	9.529621	0.106	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	11.997704	0.106	0.125667
Run1 Commercial Loading	Run1 Commercial No_loading	6	999	2.722609	0.105	0.125667
	Run1 HA Loading	6	999	4.165162	0.108	0.125667
	Run1 HA No_loading	6	999	7.879367	0.089	0.125667
	Run1 plaque_inoculum plaque_inoculum	5	999	10.103251	0.103	0.125667
	Run2 BTO Loading	6	999	12.640234	0.102	0.125667
	Run2 BTO No_loading	6	999	6.233446	0.113	0.125667
	Run2 Commercial Loading	6	999	12.058031	0.089	0.125667
	Run2 Commercial No_loading	6	999	5.778145	0.102	0.125667
	Run2 HA Loading	6	999	9.469755	0.101	0.125667
	Run2 HA No_loading	6	999	13.670114	0.109	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	19.271225	0.105	0.125667
Run1 Commercial No_loading	Run1 HA Loading	6	999	2.232345	0.099	0.125667
	Run1 HA No_loading	6	999	2.887337	0.116	0.125667
	Run1 plaque_inoculum plaque_inoculum	5	999	3.199050	0.105	0.125667
	Run2 BTO Loading	6	999	5.266925	0.096	0.125667
	Run2 BTO No_loading	6	999	2.387596	0.102	0.125667
	Run2 Commercial Loading	6	999	5.291699	0.100	0.125667
	Run2 Commercial No_loading	6	999	2.571651	0.109	0.125667
	Run2 HA Loading	6	999	3.118519	0.116	0.125667
	Run2 HA No_loading	6	999	5.393916	0.088	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	5.736245	0.102	0.125667
Run1 HA Loading	Run1 HA No_loading	6	999	7.587872	0.093	0.125667
	Run1 plaque_inoculum plaque_inoculum	5	999	4.919880	0.115	0.125667
	Run2 BTO Loading	6	999	6.834839	0.102	0.125667
	Run2 BTO No_loading	6	999	3.420167	0.095	0.125667
	Run2 Commercial Loading	6	999	6.462687	0.107	0.125667
	Run2 Commercial No_loading	6	999	3.614394	0.096	0.125667
	Run2 HA Loading	6	999	3.864898	0.093	0.125667
	Run2 HA No_loading	6	999	8.880193	0.095	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	8.017769	0.109	0.125667
Run1 HA No_loading	Run1 plaque_inoculum plaque_inoculum	5	999	12.203769	0.099	0.125667
	Run2 BTO Loading	6	999	15.696838	0.098	0.125667
	Run2 BTO No_loading	6	999	8.158212	0.092	0.125667
	Run2 Commercial Loading	6	999	16.686314	0.110	0.125667
	Run2 Commercial No_loading	6	999	6.644066	0.112	0.125667
	Run2 HA Loading	6	999	13.901997	0.112	0.125667
	Run2 HA No_loading	6	999	14.400862	0.108	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	27.346678	0.104	0.125667
Run1 plaque_inoculum plaque_inoculum	Run2 BTO Loading	5	999	14.488149	0.105	0.125667
	Run2 BTO No_loading	5	999	5.438599	0.100	0.125667
	Run2 Commercial Loading	5	999	14.378384	0.108	0.125667
	Run2 Commercial No_loading	5	999	5.196512	0.093	0.125667
	Run2 HA Loading	5	999	9.333091	0.111	0.125667
	Run2 HA No_loading	5	999	15.571785	0.092	0.125667
	Run2 plaque_inoculum plaque_inoculum	4	999	9.782941	0.326	0.333326
Run2 BTO Loading	Run2 BTO No_loading	6	999	4.489974	0.103	0.125667
	Run2 Commercial Loading	6	999	2.278449	0.083	0.125667
	Run2 Commercial No_loading	6	999	3.059270	0.113	0.125667
	Run2 HA Loading	6	999	7.414222	0.099	0.125667
	Run2 HA No_loading	6	999	10.278734	0.092	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	18.424782	0.101	0.125667
Run2 BTO No_loading	Run2 Commercial Loading	6	999	3.997655	0.105	0.125667
	Run2 Commercial No_loading	6	999	0.664652	0.704	0.704000
	Run2 HA Loading	6	999	1.574843	0.317	0.327807
	Run2 HA No_loading	6	999	5.652080	0.089	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	6.500966	0.114	0.125667
Run2 Commercial Loading	Run2 Commercial No_loading	6	999	3.024028	0.088	0.125667
	Run2 HA Loading	6	999	6.075876	0.103	0.125667
	Run2 HA No_loading	6	999	12.419236	0.079	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	18.112718	0.093	0.125667
Run2 Commercial No_loading	Run2 HA Loading	6	999	2.145583	0.098	0.125667
	Run2 HA No_loading	6	999	3.628355	0.115	0.125667
	Run2 plaque_inoculum plaque_inoculum	5	999	5.795593	0.096	0.125667
Run2 HA Loading	Run2 HA No_loading	6	999	10.305133	0.102	0.125667
Run2 HA Loading	Run2 plaque_inoculum plaque_inoculum	5	999	12.090160	0.100	0.125667
Run2 HA No_loading	Run2 plaque_inoculum plaque_inoculum	5	999	24.270987	0.116	0.125667

Overview

Group significance plots

Pairwise permanova results