q2_diversity : beta_group

	PERMANOVA results
method name	PERMANOVA
test statistic name	pseudo-F
sample size	40
number of groups	14
test statistic	4.91963
p-value	0.001
number of permutations	999

Pairwise permanova results

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		Sample size	Permutations	pseudo-F	p-value	q-value
Group 1	Group 2
Run1 BTO Loading	Run1 BTO No_loading	6	999	2.029206	0.313	0.335094
	Run1 Commercial Loading	6	999	1.101867	0.394	0.398378
	Run1 Commercial No_loading	6	999	1.651418	0.178	0.224972
	Run1 HA Loading	6	999	2.367667	0.101	0.160269
	Run1 HA No_loading	6	999	1.394261	0.378	0.395379
	Run1 plaque_inoculum plaque_inoculum	5	999	2.838174	0.219	0.246037
	Run2 BTO Loading	6	999	5.769329	0.100	0.160269
	Run2 BTO No_loading	6	999	2.997496	0.095	0.160269
	Run2 Commercial Loading	6	999	4.236067	0.088	0.160269
	Run2 Commercial No_loading	6	999	3.165249	0.106	0.160269
	Run2 HA Loading	6	999	6.356517	0.103	0.160269
	Run2 HA No_loading	6	999	2.133442	0.099	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	4.116081	0.208	0.241150
Run1 BTO No_loading	Run1 Commercial Loading	6	999	4.254296	0.114	0.160269
	Run1 Commercial No_loading	6	999	1.011681	0.391	0.398378
	Run1 HA Loading	6	999	3.502975	0.098	0.160269
	Run1 HA No_loading	6	999	5.331972	0.104	0.160269
	Run1 plaque_inoculum plaque_inoculum	5	999	5.058187	0.091	0.160269
	Run2 BTO Loading	6	999	12.133188	0.085	0.160269
	Run2 BTO No_loading	6	999	3.383598	0.091	0.160269
	Run2 Commercial Loading	6	999	8.098515	0.115	0.160269
	Run2 Commercial No_loading	6	999	3.989165	0.109	0.160269
	Run2 HA Loading	6	999	10.951427	0.100	0.160269
	Run2 HA No_loading	6	999	11.686265	0.093	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	10.652629	0.128	0.164056
Run1 Commercial Loading	Run1 Commercial No_loading	6	999	3.275207	0.110	0.160269
	Run1 HA Loading	6	999	4.030580	0.086	0.160269
	Run1 HA No_loading	6	999	3.297327	0.205	0.241150
	Run1 plaque_inoculum plaque_inoculum	5	999	6.314764	0.094	0.160269
	Run2 BTO Loading	6	999	17.323380	0.095	0.160269
	Run2 BTO No_loading	6	999	5.495307	0.104	0.160269
	Run2 Commercial Loading	6	999	10.696141	0.103	0.160269
	Run2 Commercial No_loading	6	999	6.799304	0.108	0.160269
	Run2 HA Loading	6	999	16.590482	0.110	0.160269
	Run2 HA No_loading	6	999	8.575100	0.087	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	14.638318	0.107	0.160269
Run1 Commercial No_loading	Run1 HA Loading	6	999	1.997047	0.196	0.241150
	Run1 HA No_loading	6	999	3.510348	0.109	0.160269
	Run1 plaque_inoculum plaque_inoculum	5	999	3.190344	0.103	0.160269
	Run2 BTO Loading	6	999	6.108817	0.084	0.160269
	Run2 BTO No_loading	6	999	1.348578	0.212	0.241150
	Run2 Commercial Loading	6	999	3.756996	0.108	0.160269
	Run2 Commercial No_loading	6	999	1.769676	0.277	0.307402
	Run2 HA Loading	6	999	3.747397	0.114	0.160269
	Run2 HA No_loading	6	999	6.356885	0.100	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	4.982780	0.081	0.160269
Run1 HA Loading	Run1 HA No_loading	6	999	4.961085	0.107	0.160269
	Run1 plaque_inoculum plaque_inoculum	5	999	2.622590	0.203	0.241150
	Run2 BTO Loading	6	999	4.501551	0.091	0.160269
	Run2 BTO No_loading	6	999	1.557276	0.303	0.328250
	Run2 Commercial Loading	6	999	3.338701	0.092	0.160269
	Run2 Commercial No_loading	6	999	2.029431	0.203	0.241150
	Run2 HA Loading	6	999	1.808089	0.106	0.160269
	Run2 HA No_loading	6	999	5.975240	0.118	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	3.813027	0.210	0.241150
Run1 HA No_loading	Run1 plaque_inoculum plaque_inoculum	5	999	6.450024	0.099	0.160269
	Run2 BTO Loading	6	999	18.759826	0.086	0.160269
	Run2 BTO No_loading	6	999	5.949817	0.084	0.160269
	Run2 Commercial Loading	6	999	11.339225	0.115	0.160269
	Run2 Commercial No_loading	6	999	7.056667	0.125	0.162500
	Run2 HA Loading	6	999	19.121238	0.096	0.160269
	Run2 HA No_loading	6	999	3.694728	0.108	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	16.245914	0.100	0.160269
Run1 plaque_inoculum plaque_inoculum	Run2 BTO Loading	5	999	10.010159	0.093	0.160269
	Run2 BTO No_loading	5	999	3.769432	0.124	0.162500
	Run2 Commercial Loading	5	999	7.969340	0.098	0.160269
	Run2 Commercial No_loading	5	999	4.758138	0.118	0.160269
	Run2 HA Loading	5	999	9.356879	0.104	0.160269
	Run2 HA No_loading	5	999	9.835527	0.092	0.160269
	Run2 plaque_inoculum plaque_inoculum	4	999	2.532225	0.332	0.351302
Run2 BTO Loading	Run2 BTO No_loading	6	999	4.985400	0.096	0.160269
	Run2 Commercial Loading	6	999	4.323488	0.104	0.160269
	Run2 Commercial No_loading	6	999	5.147842	0.102	0.160269
	Run2 HA Loading	6	999	16.005465	0.111	0.160269
	Run2 HA No_loading	6	999	23.901268	0.087	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	24.959764	0.081	0.160269
Run2 BTO No_loading	Run2 Commercial Loading	6	999	2.445821	0.212	0.241150
	Run2 Commercial No_loading	6	999	0.439463	0.891	0.891000
	Run2 HA Loading	6	999	1.140495	0.389	0.398378
	Run2 HA No_loading	6	999	7.438994	0.092	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	4.867247	0.100	0.160269
Run2 Commercial Loading	Run2 Commercial No_loading	6	999	2.361617	0.091	0.160269
	Run2 HA Loading	6	999	7.135598	0.109	0.160269
	Run2 HA No_loading	6	999	14.146222	0.106	0.160269
	Run2 plaque_inoculum plaque_inoculum	5	999	14.371562	0.100	0.160269
Run2 Commercial No_loading	Run2 HA Loading	6	999	2.448063	0.293	0.321241
	Run2 HA No_loading	6	999	8.325568	0.120	0.160588
	Run2 plaque_inoculum plaque_inoculum	5	999	6.310214	0.118	0.160269
Run2 HA Loading	Run2 HA No_loading	6	999	25.410358	0.100	0.160269
Run2 HA Loading	Run2 plaque_inoculum plaque_inoculum	5	999	20.876814	0.107	0.160269
Run2 HA No_loading	Run2 plaque_inoculum plaque_inoculum	5	999	32.518230	0.102	0.160269

Overview

Group significance plots

Pairwise permanova results