q2_diversity : beta_group

	PERMANOVA results
method name	PERMANOVA
test statistic name	pseudo-F
sample size	40
number of groups	14
test statistic	10.1323
p-value	0.001
number of permutations	999

Pairwise permanova results

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		Sample size	Permutations	pseudo-F	p-value	q-value
Group 1	Group 2
Run1 BTO Loading	Run1 BTO No_loading	6	999	11.590632	0.090	0.152100
	Run1 Commercial Loading	6	999	1.403780	0.407	0.435729
	Run1 Commercial No_loading	6	999	4.120956	0.106	0.152100
	Run1 HA Loading	6	999	11.625092	0.112	0.152100
	Run1 HA No_loading	6	999	5.780165	0.098	0.152100
	Run1 plaque_inoculum plaque_inoculum	5	999	280.615985	0.110	0.152100
	Run2 BTO Loading	6	999	99.981911	0.102	0.152100
	Run2 BTO No_loading	6	999	8.637632	0.116	0.152100
	Run2 Commercial Loading	6	999	20.536582	0.120	0.153803
	Run2 Commercial No_loading	6	999	12.061026	0.086	0.152100
	Run2 HA Loading	6	999	197.656558	0.113	0.152100
	Run2 HA No_loading	6	999	12.253980	0.097	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	203.490967	0.094	0.152100
Run1 BTO No_loading	Run1 Commercial Loading	6	999	12.899011	0.088	0.152100
	Run1 Commercial No_loading	6	999	1.057732	0.434	0.453954
	Run1 HA Loading	6	999	8.250792	0.102	0.152100
	Run1 HA No_loading	6	999	19.588286	0.100	0.152100
	Run1 plaque_inoculum plaque_inoculum	5	999	22.363735	0.105	0.152100
	Run2 BTO Loading	6	999	35.156850	0.084	0.152100
	Run2 BTO No_loading	6	999	4.620042	0.107	0.152100
	Run2 Commercial Loading	6	999	13.139934	0.115	0.152100
	Run2 Commercial No_loading	6	999	4.499960	0.107	0.152100
	Run2 HA Loading	6	999	35.887322	0.088	0.152100
	Run2 HA No_loading	6	999	26.222836	0.103	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	23.272032	0.096	0.152100
Run1 Commercial Loading	Run1 Commercial No_loading	6	999	5.550126	0.100	0.152100
	Run1 HA Loading	6	999	11.978856	0.085	0.152100
	Run1 HA No_loading	6	999	1.204849	0.413	0.437012
	Run1 plaque_inoculum plaque_inoculum	5	999	115.344975	0.104	0.152100
	Run2 BTO Loading	6	999	93.019923	0.105	0.152100
	Run2 BTO No_loading	6	999	9.719678	0.099	0.152100
	Run2 Commercial Loading	6	999	23.237532	0.099	0.152100
	Run2 Commercial No_loading	6	999	13.005663	0.092	0.152100
	Run2 HA Loading	6	999	166.839661	0.092	0.152100
	Run2 HA No_loading	6	999	3.247900	0.100	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	75.906252	0.093	0.152100
Run1 Commercial No_loading	Run1 HA Loading	6	999	2.969873	0.205	0.239167
	Run1 HA No_loading	6	999	6.955458	0.104	0.152100
	Run1 plaque_inoculum plaque_inoculum	5	999	5.466106	0.222	0.249407
	Run2 BTO Loading	6	999	8.354335	0.090	0.152100
	Run2 BTO No_loading	6	999	1.156098	0.188	0.229320
	Run2 Commercial Loading	6	999	3.885094	0.083	0.152100
	Run2 Commercial No_loading	6	999	1.408932	0.499	0.516011
	Run2 HA Loading	6	999	4.157765	0.089	0.152100
	Run2 HA No_loading	6	999	8.909998	0.114	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	5.900718	0.189	0.229320
Run1 HA Loading	Run1 HA No_loading	6	999	14.693103	0.117	0.152100
	Run1 plaque_inoculum plaque_inoculum	5	999	7.693138	0.222	0.249407
	Run2 BTO Loading	6	999	9.320367	0.108	0.152100
	Run2 BTO No_loading	6	999	1.541009	0.523	0.534753
	Run2 Commercial Loading	6	999	5.487699	0.101	0.152100
	Run2 Commercial No_loading	6	999	3.078995	0.195	0.231636
	Run2 HA Loading	6	999	1.573125	0.401	0.434417
	Run2 HA No_loading	6	999	15.380929	0.091	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	8.345777	0.099	0.152100
Run1 HA No_loading	Run1 plaque_inoculum plaque_inoculum	5	999	1896.228379	0.090	0.152100
	Run2 BTO Loading	6	999	124.002490	0.107	0.152100
	Run2 BTO No_loading	6	999	11.268642	0.117	0.152100
	Run2 Commercial Loading	6	999	27.538561	0.091	0.152100
	Run2 Commercial No_loading	6	999	15.653493	0.109	0.152100
	Run2 HA Loading	6	999	293.036726	0.092	0.152100
	Run2 HA No_loading	6	999	129.319596	0.091	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	3643.297817	0.095	0.152100
Run1 plaque_inoculum plaque_inoculum	Run2 BTO Loading	5	999	91.649082	0.104	0.152100
	Run2 BTO No_loading	5	999	6.908810	0.102	0.152100
	Run2 Commercial Loading	5	999	21.427692	0.090	0.152100
	Run2 Commercial No_loading	5	999	9.573700	0.102	0.152100
	Run2 HA Loading	5	999	182.768491	0.095	0.152100
	Run2 HA No_loading	5	999	2274.770220	0.110	0.152100
	Run2 plaque_inoculum plaque_inoculum	4	999	100.949884	0.337	0.369482
Run2 BTO Loading	Run2 BTO No_loading	6	999	6.413929	0.105	0.152100
	Run2 Commercial Loading	6	999	5.643304	0.091	0.152100
	Run2 Commercial No_loading	6	999	6.861317	0.105	0.152100
	Run2 HA Loading	6	999	67.779441	0.117	0.152100
	Run2 HA No_loading	6	999	124.271701	0.101	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	76.260600	0.100	0.152100
Run2 BTO No_loading	Run2 Commercial Loading	6	999	2.726553	0.208	0.239595
	Run2 Commercial No_loading	6	999	0.346864	0.787	0.795744
	Run2 HA Loading	6	999	0.789120	0.799	0.799000
	Run2 HA No_loading	6	999	12.446969	0.103	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	6.048920	0.196	0.231636
Run2 Commercial Loading	Run2 Commercial No_loading	6	999	2.896977	0.182	0.226877
	Run2 HA Loading	6	999	12.789445	0.090	0.152100
	Run2 HA No_loading	6	999	28.110598	0.098	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	20.233840	0.101	0.152100
Run2 Commercial No_loading	Run2 HA Loading	6	999	3.565321	0.310	0.344024
	Run2 HA No_loading	6	999	17.340180	0.107	0.152100
	Run2 plaque_inoculum plaque_inoculum	5	999	7.752541	0.096	0.152100
Run2 HA Loading	Run2 HA No_loading	6	999	314.488568	0.093	0.152100
Run2 HA Loading	Run2 plaque_inoculum plaque_inoculum	5	999	186.926493	0.098	0.152100
Run2 HA No_loading	Run2 plaque_inoculum plaque_inoculum	5	999	4501.031866	0.131	0.165569

Overview

Group significance plots

Pairwise permanova results