Overview

PERMANOVA results
method name PERMANOVA
test statistic name pseudo-F
sample size 40
number of groups 14
test statistic 4.4927
p-value 0.001
number of permutations 999

Pairwise permanova results

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Sample size Permutations pseudo-F p-value q-value
Group 1 Group 2
Run1 BTO Loading Run1 BTO No_loading 6 999 2.516453 0.097 0.153400
Run1 Commercial Loading 6 999 0.856893 0.504 0.515326
Run1 Commercial No_loading 6 999 1.169492 0.396 0.419023
Run1 HA Loading 6 999 1.850513 0.175 0.212333
Run1 HA No_loading 6 999 1.054858 0.517 0.522744
Run1 plaque_inoculum plaque_inoculum 5 999 4.618633 0.102 0.153400
Run2 BTO Loading 6 999 10.525733 0.090 0.153400
Run2 BTO No_loading 6 999 2.433984 0.103 0.153400
Run2 Commercial Loading 6 999 6.372742 0.104 0.153400
Run2 Commercial No_loading 6 999 2.566852 0.097 0.153400
Run2 HA Loading 6 999 4.068366 0.115 0.153400
Run2 HA No_loading 6 999 1.975465 0.094 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 5.193843 0.093 0.153400
Run1 BTO No_loading Run1 Commercial Loading 6 999 4.326844 0.105 0.153400
Run1 Commercial No_loading 6 999 0.921547 0.584 0.584000
Run1 HA Loading 6 999 3.173080 0.098 0.153400
Run1 HA No_loading 6 999 6.195917 0.102 0.153400
Run1 plaque_inoculum plaque_inoculum 5 999 15.156990 0.087 0.153400
Run2 BTO Loading 6 999 33.388168 0.112 0.153400
Run2 BTO No_loading 6 999 3.454663 0.098 0.153400
Run2 Commercial Loading 6 999 16.230662 0.094 0.153400
Run2 Commercial No_loading 6 999 2.996659 0.092 0.153400
Run2 HA Loading 6 999 6.830583 0.084 0.153400
Run2 HA No_loading 6 999 12.120901 0.090 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 18.857638 0.122 0.154194
Run1 Commercial Loading Run1 Commercial No_loading 6 999 1.968510 0.097 0.153400
Run1 HA Loading 6 999 2.829459 0.120 0.153803
Run1 HA No_loading 6 999 2.802962 0.221 0.245256
Run1 plaque_inoculum plaque_inoculum 5 999 14.940835 0.116 0.153400
Run2 BTO Loading 6 999 34.828465 0.097 0.153400
Run2 BTO No_loading 6 999 3.605227 0.102 0.153400
Run2 Commercial Loading 6 999 15.026881 0.102 0.153400
Run2 Commercial No_loading 6 999 5.003588 0.130 0.162055
Run2 HA Loading 6 999 6.802460 0.099 0.153400
Run2 HA No_loading 6 999 9.038275 0.112 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 18.781995 0.098 0.153400
Run1 Commercial No_loading Run1 HA Loading 6 999 1.399248 0.194 0.226333
Run1 HA No_loading 6 999 2.280028 0.102 0.153400
Run1 plaque_inoculum plaque_inoculum 5 999 2.978571 0.113 0.153400
Run2 BTO Loading 6 999 6.526612 0.091 0.153400
Run2 BTO No_loading 6 999 1.358677 0.205 0.233187
Run2 Commercial Loading 6 999 4.632099 0.083 0.153400
Run2 Commercial No_loading 6 999 1.183449 0.483 0.499466
Run2 HA Loading 6 999 2.397341 0.111 0.153400
Run2 HA No_loading 6 999 3.362557 0.102 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 3.373433 0.084 0.153400
Run1 HA Loading Run1 HA No_loading 6 999 3.306366 0.109 0.153400
Run1 plaque_inoculum plaque_inoculum 5 999 2.198257 0.187 0.221000
Run2 BTO Loading 6 999 4.705038 0.109 0.153400
Run2 BTO No_loading 6 999 1.468844 0.315 0.341250
Run2 Commercial Loading 6 999 3.493817 0.100 0.153400
Run2 Commercial No_loading 6 999 1.935460 0.216 0.242667
Run2 HA Loading 6 999 1.630593 0.185 0.221000
Run2 HA No_loading 6 999 4.165288 0.098 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 2.595621 0.236 0.258747
Run1 HA No_loading Run1 plaque_inoculum plaque_inoculum 5 999 15.568384 0.118 0.153400
Run2 BTO Loading 6 999 34.109131 0.092 0.153400
Run2 BTO No_loading 6 999 3.990448 0.098 0.153400
Run2 Commercial Loading 6 999 13.895848 0.115 0.153400
Run2 Commercial No_loading 6 999 4.811545 0.092 0.153400
Run2 HA Loading 6 999 7.408825 0.112 0.153400
Run2 HA No_loading 6 999 3.610000 0.100 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 18.601223 0.102 0.153400
Run1 plaque_inoculum plaque_inoculum Run2 BTO Loading 5 999 70.660552 0.090 0.153400
Run2 BTO No_loading 5 999 3.398627 0.107 0.153400
Run2 Commercial Loading 5 999 17.541810 0.106 0.153400
Run2 Commercial No_loading 5 999 5.627244 0.102 0.153400
Run2 HA Loading 5 999 5.946975 0.095 0.153400
Run2 HA No_loading 5 999 53.061089 0.107 0.153400
Run2 plaque_inoculum plaque_inoculum 4 999 9.174021 0.320 0.342588
Run2 BTO Loading Run2 BTO No_loading 6 999 4.808751 0.086 0.153400
Run2 Commercial Loading 6 999 6.651753 0.094 0.153400
Run2 Commercial No_loading 6 999 5.904429 0.133 0.163554
Run2 HA Loading 6 999 8.068328 0.092 0.153400
Run2 HA No_loading 6 999 71.524033 0.094 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 81.847067 0.107 0.153400
Run2 BTO No_loading Run2 Commercial Loading 6 999 3.213603 0.096 0.153400
Run2 Commercial No_loading 6 999 0.960592 0.412 0.430943
Run2 HA Loading 6 999 1.656711 0.197 0.226924
Run2 HA No_loading 6 999 4.517918 0.098 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 3.420262 0.100 0.153400
Run2 Commercial Loading Run2 Commercial No_loading 6 999 2.915260 0.110 0.153400
Run2 HA Loading 6 999 4.489319 0.117 0.153400
Run2 HA No_loading 6 999 16.917504 0.097 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 16.942875 0.098 0.153400
Run2 Commercial No_loading Run2 HA Loading 6 999 2.630802 0.097 0.153400
Run2 HA No_loading 6 999 4.944735 0.100 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 5.364728 0.097 0.153400
Run2 HA Loading Run2 HA No_loading 6 999 8.215221 0.103 0.153400
Run2 plaque_inoculum plaque_inoculum 5 999 6.274683 0.087 0.153400
Run2 HA No_loading Run2 plaque_inoculum plaque_inoculum 5 999 67.004202 0.103 0.153400