Overview

PERMANOVA results
method name PERMANOVA
test statistic name pseudo-F
sample size 40
number of groups 14
test statistic 5.89898
p-value 0.001
number of permutations 999

Pairwise permanova results

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Sample size Permutations pseudo-F p-value q-value
Group 1 Group 2
Run1 BTO Loading Run1 BTO No_loading 6 999 23.893523 0.106 0.153478
Run1 Commercial Loading 6 999 2.350957 0.264 0.292976
Run1 Commercial No_loading 6 999 1.475868 0.197 0.239474
Run1 HA Loading 6 999 3.575494 0.093 0.153478
Run1 HA No_loading 6 999 0.210011 0.784 0.784000
Run1 plaque_inoculum plaque_inoculum 5 999 63.381499 0.092 0.153478
Run2 BTO Loading 6 999 202.665883 0.096 0.153478
Run2 BTO No_loading 6 999 5.813193 0.097 0.153478
Run2 Commercial Loading 6 999 33.919173 0.091 0.153478
Run2 Commercial No_loading 6 999 2.518022 0.094 0.153478
Run2 HA Loading 6 999 6.563961 0.108 0.153478
Run2 HA No_loading 6 999 1.695856 0.428 0.452884
Run2 plaque_inoculum plaque_inoculum 5 999 70.188599 0.089 0.153478
Run1 BTO No_loading Run1 Commercial Loading 6 999 10.396194 0.105 0.153478
Run1 Commercial No_loading 6 999 1.004136 0.613 0.619811
Run1 HA Loading 6 999 3.448164 0.112 0.153478
Run1 HA No_loading 6 999 732.901207 0.090 0.153478
Run1 plaque_inoculum plaque_inoculum 5 999 3682.233397 0.098 0.153478
Run2 BTO Loading 6 999 9999.748693 0.087 0.153478
Run2 BTO No_loading 6 999 5.899867 0.104 0.153478
Run2 Commercial Loading 6 999 69.480392 0.103 0.153478
Run2 Commercial No_loading 6 999 2.534682 0.104 0.153478
Run2 HA Loading 6 999 8.119899 0.102 0.153478
Run2 HA No_loading 6 999 1732.065191 0.097 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 4926.906172 0.099 0.153478
Run1 Commercial Loading Run1 Commercial No_loading 6 999 1.219788 0.200 0.239474
Run1 HA Loading 6 999 3.502553 0.097 0.153478
Run1 HA No_loading 6 999 7.615611 0.098 0.153478
Run1 plaque_inoculum plaque_inoculum 5 999 144.610759 0.104 0.153478
Run2 BTO Loading 6 999 486.795426 0.086 0.153478
Run2 BTO No_loading 6 999 5.930233 0.099 0.153478
Run2 Commercial Loading 6 999 49.643278 0.097 0.153478
Run2 Commercial No_loading 6 999 2.605109 0.115 0.153897
Run2 HA Loading 6 999 7.125497 0.090 0.153478
Run2 HA No_loading 6 999 19.778902 0.094 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 192.917402 0.095 0.153478
Run1 Commercial No_loading Run1 HA Loading 6 999 1.052650 0.491 0.507739
Run1 HA No_loading 6 999 1.779240 0.106 0.153478
Run1 plaque_inoculum plaque_inoculum 5 999 2.247440 0.197 0.239474
Run2 BTO Loading 6 999 6.993326 0.099 0.153478
Run2 BTO No_loading 6 999 1.558154 0.193 0.239474
Run2 Commercial Loading 6 999 5.345953 0.105 0.153478
Run2 Commercial No_loading 6 999 0.671826 0.508 0.519416
Run2 HA Loading 6 999 2.019181 0.215 0.244562
Run2 HA No_loading 6 999 2.354448 0.112 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 3.071005 0.111 0.153478
Run1 HA Loading Run1 HA No_loading 6 999 4.512642 0.099 0.153478
Run1 plaque_inoculum plaque_inoculum 5 999 2.448391 0.199 0.239474
Run2 BTO Loading 6 999 7.255840 0.095 0.153478
Run2 BTO No_loading 6 999 2.264724 0.214 0.244562
Run2 Commercial Loading 6 999 4.606661 0.107 0.153478
Run2 Commercial No_loading 6 999 1.288363 0.289 0.316855
Run2 HA Loading 6 999 1.618921 0.293 0.317417
Run2 HA No_loading 6 999 5.164707 0.107 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 3.089211 0.187 0.239474
Run1 HA No_loading Run1 plaque_inoculum plaque_inoculum 5 999 4579.601020 0.094 0.153478
Run2 BTO Loading 6 999 8687.865780 0.103 0.153478
Run2 BTO No_loading 6 999 6.628486 0.088 0.153478
Run2 Commercial Loading 6 999 48.033162 0.104 0.153478
Run2 Commercial No_loading 6 999 3.500162 0.093 0.153478
Run2 HA Loading 6 999 8.127003 0.108 0.153478
Run2 HA No_loading 6 999 16.536001 0.095 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 4364.661009 0.106 0.153478
Run1 plaque_inoculum plaque_inoculum Run2 BTO Loading 5 999 21569.672469 0.111 0.153478
Run2 BTO No_loading 5 999 4.749449 0.206 0.240333
Run2 Commercial Loading 5 999 44.502128 0.113 0.153478
Run2 Commercial No_loading 5 999 4.121181 0.105 0.153478
Run2 HA Loading 5 999 6.136834 0.103 0.153478
Run2 HA No_loading 5 999 10068.528959 0.100 0.153478
Run2 plaque_inoculum plaque_inoculum 4 999 542.897156 0.310 0.331882
Run2 BTO Loading Run2 BTO No_loading 6 999 7.995631 0.104 0.153478
Run2 Commercial Loading 6 999 12.767806 0.106 0.153478
Run2 Commercial No_loading 6 999 7.775980 0.097 0.153478
Run2 HA Loading 6 999 7.950361 0.099 0.153478
Run2 HA No_loading 6 999 12614.806653 0.105 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 13401.325946 0.103 0.153478
Run2 BTO No_loading Run2 Commercial Loading 6 999 4.954868 0.101 0.153478
Run2 Commercial No_loading 6 999 0.895962 0.436 0.456046
Run2 HA Loading 6 999 2.435258 0.204 0.240333
Run2 HA No_loading 6 999 6.872688 0.105 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 5.127984 0.192 0.239474
Run2 Commercial Loading Run2 Commercial No_loading 6 999 3.451922 0.098 0.153478
Run2 HA Loading 6 999 3.664234 0.092 0.153478
Run2 HA No_loading 6 999 43.836219 0.097 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 38.308136 0.124 0.163536
Run2 Commercial No_loading Run2 HA Loading 6 999 2.131694 0.221 0.248284
Run2 HA No_loading 6 999 4.151658 0.095 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 5.033495 0.099 0.153478
Run2 HA Loading Run2 HA No_loading 6 999 7.705681 0.105 0.153478
Run2 plaque_inoculum plaque_inoculum 5 999 6.268554 0.104 0.153478
Run2 HA No_loading Run2 plaque_inoculum plaque_inoculum 5 999 7661.894120 0.090 0.153478