taxon lfc: Run2 vs. Run1 se: Run2 vs. Run1 W: Run2 vs. Run1 p: Run2 vs. Run1 q: Run2 vs. Run1 diff: Run2 vs. Run1 Fusobacterium nucleatum_subsp._animalis (SP1) -1.7245001024982 0.677751484603821 -2.54444312063182 0.0109452135984756 1 FALSE Capnocytophaga gingivalis (SP10) 1.39585066545983 0.447079276858061 3.12215469987661 0.00179532572490418 0.251345601486585 FALSE Streptococcus tigurinus (SP100) 0.993195245225035 0.259441081384117 3.82821116812473 0.0001290779902355 0.0189744645646185 TRUE TM7_[G-1] sp._oral_taxon_348 (SP101) -0.085294664125667 0.309237678431392 -0.275822353079108 0.782684514172785 1 FALSE Stomatobaculum longum (SP102) 1.21293094501409 0.323409599338196 3.75044818550889 0.000176518779310208 0.0257717417792904 TRUE Prevotella micans (SP104) 0.776152625582275 0.325549191211058 2.38413317107302 0.01711940604493 1 FALSE Streptococcus anginosus (SP105) 0.85831630016329 0.214768798893157 3.99646645409738 6.42949877596059e-05 0.00964424816394089 TRUE Capnocytophaga granulosa (SP108) -1.48314308278375 0.318202976756926 -4.66099688286928 3.14681490109945e-06 0.000500343569274813 TRUE Capnocytophaga leadbetteri (SP109) -0.697716776220501 0.264524553446501 -2.63762575961256 0.00834886624210732 1 FALSE Campylobacter concisus (SP11) 1.01326782468525 0.524920979752464 1.930324494104 0.0535666439492487 1 FALSE Streptococcus gordonii (SP110) -0.543449554608317 0.261106524571661 -2.08133272617309 0.0374034616658496 1 FALSE Fretibacterium sp._oral_taxon_359 (SP111) -0.126039194997288 0.437617221294944 -0.288012420133578 0.773337231426385 1 FALSE Bacteroidetes_[G-5] sp._oral_taxon_511 (SP112) -0.826894098524141 0.462723338834533 -1.78701619115831 0.0739348717103896 1 FALSE Capnocytophaga sp._oral_taxon_338 (SP113) -0.333309438743592 0.2886753841563 -1.15461676691881 0.248247397426778 1 FALSE Rhizobium loti (SP114) 0.21963347000755 0.18802076795198 1.16813409709955 0.242752678504615 1 FALSE Corynebacterium matruchotii (SP115) -0.242690500922052 0.175198562235118 -1.38523112191046 0.16598180723978 1 FALSE Capnocytophaga sp._oral_taxon_412 (SP118) -1.30122613521555 0.437972516945805 -2.97102234699481 0.00296810182420748 0.40069374626801 FALSE Porphyromonas gingivalis (SP12) -1.81033930115896 1.00519164947766 -1.80098919653749 0.0717045827786496 1 FALSE Actinomyces odontolyticus (SP120) 0.126818570489269 0.15560869371022 0.814983838405812 0.41508156116398 1 FALSE TM7_[G-1] sp._oral_taxon_346 (SP121) -0.0438624245937665 0.469323182343928 -0.0934588919616236 0.925539006170111 1 FALSE Ruminococcaceae_[G-1] sp._oral_taxon_075 (SP123) -0.135155272836986 0.198352750334425 -0.681388448655803 0.495625730085216 1 FALSE Treponema vincentii (SP124) -0.247958526704944 0.141567800779632 -1.75151782636591 0.0798567533811167 1 FALSE Porphyromonas sp._oral_taxon_277 (SP125) -0.548815141397772 0.22608509997459 -2.42747152050026 0.0152044805373719 1 FALSE Leptotrichia trevisanii (SP127) -0.101398839084123 0.167943372738406 -0.603768028656093 0.545997878270894 1 FALSE Catonella sp._oral_taxon_451 (SP128) -0.149916736741344 0.247822315517009 -0.604936389318237 0.545221263282753 1 FALSE Bacteroidetes_[G-3] sp._oral_taxon_280 (SP129) 0.284946052679868 0.300538619841921 0.948117925176291 0.343069423802172 1 FALSE Capnocytophaga sp._oral_taxon_380 (SP130) 1.10105179799567 0.237723810936474 4.63164288700511 3.62775497588591e-06 0.000569557531214088 TRUE Dialister pneumosintes (SP133) -0.0144730913486605 0.173774196519753 -0.0832867689134467 0.933623520618409 1 FALSE Streptococcus parasanguinis_II (SP135) 0.55100613569895 0.266821242725617 2.06507596647982 0.038915813035137 1 FALSE SR1_[G-1] sp._oral_taxon_345 (SP137) 0.285667814647221 0.35459649927242 0.805613747550723 0.420465596291106 1 FALSE Olsenella sp._oral_taxon_807 (SP138) -0.0981719130272441 0.2060066400513 -0.476547323925078 0.633684500963748 1 FALSE Tannerella forsythia (SP14) -0.272390332329207 0.46493824889475 -0.585863462463526 0.55796727243338 1 FALSE Lachnospiraceae_[G-3] sp._oral_taxon_100 (SP140) -0.735343466608965 0.4100525302933 -1.7932908890551 0.0729264234683193 1 FALSE Porphyromonas catoniae (SP141) 0.477562930376851 0.385667890279122 1.23827506104079 0.215614087689571 1 FALSE Slackia exigua (SP142) 0.0751148821127423 0.165174939922544 0.45475955461504 0.649282230570015 1 FALSE Prevotella buccae (SP143) -0.418018395788051 0.287593069992694 -1.45350649721382 0.146083177061247 1 FALSE Leptotrichia buccalis (SP145) -0.334263987666833 0.270282338949744 -1.23672152966305 0.216190482933075 1 FALSE Bergeyella sp._oral_taxon_900 (SP146) -0.167486631083239 0.154811320460266 -1.08187586402136 0.279307690887295 1 FALSE Bacillus anthracis (SP148) -0.239832580230055 0.165822741129198 -1.44631899458949 0.14808775053298 1 FALSE Gemella morbillorum (SP151) -0.491733657710181 0.287698030462972 -1.70920063970848 0.0874137904235184 1 FALSE Streptococcus sp._oral_taxon_064 (SP152) -0.515598804296549 0.302912333718533 -1.70213869460873 0.0887293717371085 1 FALSE Prevotella oulorum (SP153) -0.282243408025269 0.328473962847562 -0.859256562007174 0.390198983654101 1 FALSE Mycoplasma faucium (SP154) 0.0974292372441632 0.27297565804951 0.356915477153982 0.721155082683341 1 FALSE Treponema socranskii (SP162) 0.069846856329851 0.194519237340184 0.359074286352972 0.719539517129858 1 FALSE Fusobacterium canifelinum (SP163) 0.0164788690716506 0.288449268606869 0.0571291761329089 0.954442295177272 1 FALSE Propionibacterium propionicum (SP166) 0.0337809534535188 0.238905458326265 0.141398834878797 0.887554874655333 1 FALSE Fusobacterium sp._oral_taxon_370 (SP17) 2.48916071062791 0.759522640613109 3.27726992919998 0.0010481611292324 0.148838880351 FALSE Leptotrichia sp._oral_taxon_212 (SP170) -0.0659540622077184 0.242559530278721 -0.271908764549188 0.785692171925432 1 FALSE Johnsonella sp._oral_taxon_166 (SP171) -0.0373521468110194 0.166315471935977 -0.224586121641155 0.822301262428091 1 FALSE Streptococcus sp._oral_taxon_058 (SP182) -0.202143990111236 0.135881665541248 -1.48764727975661 0.136843937799197 1 FALSE Bacteroidetes_[G-3] sp._oral_taxon_365 (SP183) -0.129602345998363 0.144901282425882 -0.894418212376109 0.371098171651319 1 FALSE Tannerella sp._oral_taxon_808 (SP184) 0.0204278141910666 0.212139176794497 0.096294397384484 0.923286760650003 1 FALSE Erysipelotrichaceae_[G-1] sp._oral_taxon_905 (SP188) 0.026073419462156 0.152851547013679 0.170580016830465 0.864554011870383 1 FALSE Eikenella sp._oral_taxon_011 (SP189) -0.181870734705828 0.117020339096097 -1.55418054767792 0.120141356165652 1 FALSE Haemophilus parainfluenzae (SP191) -0.44454980834116 0.189786796961745 -2.34236425008409 0.01916200337753 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP192) -1.13437375001347 0.371360276715887 -3.05464483182011 0.00225327189026512 0.310951520856587 FALSE Oribacterium sp._oral_taxon_078 (SP199) 0.0607307784901532 0.210288163395412 0.288797892898798 0.772736044662291 1 FALSE Fusobacterium nucleatum_subsp._nucleatum (SP2) 1.38836063696324 0.647082364314294 2.1455701986786 0.0319072851973032 1 FALSE Capnocytophaga sp._oral_taxon_336 (SP20) -2.28775697054791 0.526389809781251 -4.34612701089069 1.38562355333951e-05 0.00216157274320963 TRUE Streptococcus sp._oral_taxon_423 (SP202) -0.474856598519676 0.24382754078066 -1.94751010078407 0.0514736099800604 1 FALSE TM7_[G-1] sp._oral_taxon_952 (SP204) -0.357819755571755 0.186995350413352 -1.91352220673293 0.0556812334029966 1 FALSE Treponema maltophilum (SP206) -0.14460757562088 0.208173664435698 -0.694648749220375 0.487275453650442 1 FALSE Erysipelotrichaceae_[G-1] sp._oral_taxon_904 (SP207) 0.335383850657181 0.27108378534974 1.23719627946202 0.21601422245098 1 FALSE Prevotella intermedia (SP21) 1.69454346569382 0.556516283340742 3.04491264033022 0.00232747904851022 0.3188646296459 FALSE Alloprevotella sp._oral_taxon_913 (SP212) -0.329420553691458 0.17516255188124 -1.88065628271279 0.0600186901951213 1 FALSE Treponema sp._oral_taxon_256 (SP213) -0.00432604914882599 0.21038992104862 -0.0205620550987623 0.98359500970628 1 FALSE Burkholderia cepacia (SP219) 0.345919902222963 0.242460229081389 1.42670780908503 0.153664133799383 1 FALSE Capnocytophaga sp._oral_taxon_326 (SP22) 1.12785045690875 0.559752099177301 2.01491063377236 0.0439140136041923 1 FALSE Prevotella marshii (SP221) 0.120511006222924 0.201787884351183 0.597216263059639 0.550363002569759 1 FALSE Bacteroidaceae_[G-1] sp._oral_taxon_272 (SP222) 0.0516147006504555 0.170283231013063 0.303110883810372 0.761805360016589 1 FALSE Prevotella sp._oral_taxon_526 (SP224) 0.249286656107699 0.245892321993575 1.01380414844434 0.310676215415602 1 FALSE Fusobacterium nucleatum (SP227) 0.271337158384078 0.161423703930926 1.68090033728989 0.0927822744558152 1 FALSE Peptostreptococcaceae_[XI][G-4] sp._oral_taxon_103 (SP228) 0.21205597510119 0.204895515771448 1.03494688159857 0.30069371872247 1 FALSE Bacteroidales_[G-2] sp._oral_taxon_274 (SP23) -1.7043840414422 0.517028568921565 -3.29649876987892 0.000978980433378877 0.139994201973179 FALSE Treponema sp._oral_taxon_237 (SP230) -0.0184462999163729 0.234394236565433 -0.0786977537787006 0.937273032165439 1 FALSE Rothia dentocariosa (SP235) 0.0516147006504555 0.15658236031076 0.329632920004646 0.741677345053881 1 FALSE Bergeyella sp._oral_taxon_322 (SP238) 0.0607307784901532 0.119904330465294 0.506493620826578 0.612510166793076 1 FALSE Lachnospiraceae_[G] sp._Oral_Taxon_G33 (SP239) 0.127371062298598 0.181248447672173 0.702742914129539 0.482215978574098 1 FALSE Mogibacterium diversum (SP24) -1.86518426049831 0.452873258668747 -4.11855684740837 3.81252524134948e-05 0.0057950383668512 TRUE Peptostreptococcaceae_[XI][G-4] sp._oral_taxon_369 (SP240) -0.17260057353926 0.266593109445852 -0.647430737793757 0.517353207694125 1 FALSE Lachnoanaerobaculum umeaense (SP241) -0.312005218978047 0.121732535108582 -2.56303886795544 0.0103760431973458 1 FALSE Prevotella oris (SP245) -0.0202646821249166 0.229303163825212 -0.0883750655109297 0.929578578579991 1 FALSE Leptotrichia sp._oral_taxon_498 (SP26) -0.290831038297505 0.339062820249881 -0.857749717539567 0.3910306803188 1 FALSE Pseudoramibacter alactolyticus (SP269) 0.054054208858927 0.131252203529618 0.411834677097281 0.680460602527525 1 FALSE Campylobacter rectus (SP27) 0.631742846635363 0.440696857821734 1.43350885177155 0.151712471091368 1 FALSE Granulicatella adiacens (SP29) 0.311775290018947 0.545824135067792 0.57120099678301 0.567863402622219 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP3) -1.7024393889835 0.697028866427207 -2.44242307741109 0.0145890382980569 1 FALSE Fusobacterium naviforme (SP30) -0.414568752213704 0.295002872266888 -1.40530412137359 0.159930863345448 1 FALSE Afipia sp._genosp._4 (SP307) 0.566194851765915 0.272744334335535 2.075917921981 0.0379015428497824 1 FALSE Porphyromonas endodontalis (SP31) -1.01179764216009 0.54764989978096 -1.84752638969673 0.0646708870550727 1 FALSE Methylobacterium rhodesianum (SP32) 1.56532737918477 0.43834149070568 3.57102262134658 0.000355590178715217 0.0515605759137064 FALSE Rhizobium larrymoorei_Oral_Taxon_D45 (SP328) 0.903353216106623 0.371643616244482 2.43069751940085 0.0150697895883334 1 FALSE Fusobacterium periodonticum (SP34) -1.03674139846203 0.469448361129731 -2.20842479025191 0.0272146752706401 1 FALSE Solobacterium moorei (SP35) 0.12736824086966 0.396294601772803 0.321397869917695 0.747908897127318 1 FALSE Veillonella parvula_group (SP36) -0.530114284487986 0.385174746985276 -1.37629553504516 0.168730154697549 1 FALSE Prevotella sp._oral_taxon_317 (SP38) -0.110504764621369 0.636955952478908 -0.173488864012192 0.86226718039079 1 FALSE Streptococcus sp._oral_taxon_070 (SP39) 0.178512223815194 0.396597236489628 0.4501096008516 0.652631414400594 1 FALSE Fretibacterium sp._oral_taxon_360 (SP4) -1.24332754338736 0.773936017131164 -1.6064991367066 0.108164284474314 1 FALSE Leptotrichia sp._oral_taxon_215 (SP40) -1.33960934913928 0.471669330789164 -2.84014512221504 0.00450930145716088 0.599737093802398 FALSE Campylobacter showae (SP41) -2.53616041238998 0.38548743037808 -6.57910015354469 4.7330389253575e-11 7.57286228057199e-09 TRUE Mycoplasma salivarium (SP42) 0.693667110312193 0.24265164939355 2.8586952202709 0.00425387273045559 0.570018945881049 FALSE Lachnospiraceae_[G-8] sp._oral_taxon_500 (SP44) -0.726407897706875 0.311325919096207 -2.33327151114071 0.0196338996805029 1 FALSE Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yurii_subsp._yurii_&_margaretiae (SP45) -0.0897564582698541 0.425871161171855 -0.21075965327841 0.833074823337879 1 FALSE Streptococcus dentisani (SP46) 1.48929076669463 0.417276962006883 3.56907019149086 0.000358250441200476 0.0515880635328685 FALSE Fretibacterium sp._oral_taxon_361 (SP47) 0.0993902729018273 0.288744496501456 0.344215297974782 0.730684378361525 1 FALSE Methylobacterium sp._Oral_Taxon_B84 (SP48) 2.24159300489056 0.483533204255725 4.63586158129702 3.55453779001301e-06 0.000561616970822055 TRUE Anaerolineae_[G-1] sp._oral_taxon_439 (SP49) 0.0766534650460799 0.24458413195992 0.31340326304832 0.753974305457422 1 FALSE Parvimonas micra (SP5) 0.583063726936448 0.386826950457254 1.50729861569167 0.131734132272616 1 FALSE Eikenella corrodens (SP50) 0.180619132422839 0.511108332343331 0.353387180355162 0.723798195241997 1 FALSE Fusobacterium sp._HOT_204 (SP51) -0.878678689873532 0.432796782121512 -2.03023387920392 0.0423327716209087 1 FALSE Capnocytophaga sp._oral_taxon_864 (SP53) 1.63074437263364 0.392940687708239 4.15010311643899 3.32325528090132e-05 0.00511781313258803 TRUE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP54) -0.00783950894115384 0.344172368364293 -0.0227778568582124 0.981827471109413 1 FALSE Afipia broomeae (SP55) 1.72358483069621 0.433094004233285 3.97970143629095 6.90018718359651e-05 0.0102122770317228 TRUE Porphyromonas sp._oral_taxon_278 (SP56) -0.554606732174028 0.218794253687888 -2.5348322582785 0.011250118234123 1 FALSE Treponema denticola (SP57) -0.016421731848636 0.347494086734766 -0.0472575864612348 0.962307931390884 1 FALSE Stenotrophomonas maltophilia (SP58) 0.928807543089794 0.370251786265253 2.50858355731034 0.0121216295746908 1 FALSE TM7_[G-1] sp._oral_taxon_349 (SP59) -0.00182326562546594 0.372895282928918 -0.00488948428401947 0.99609877152398 1 FALSE Fusobacterium nucleatum_subsp._polymorphum (SP6) -2.19288823887203 0.674336997916723 -3.25191743245095 0.00114629315871061 0.161627335378196 FALSE Bacteroidetes_[G-3] sp._oral_taxon_503 (SP61) 0.210517392167853 0.223426041246728 0.942224062124342 0.346077937107508 1 FALSE Campylobacter sp._oral_taxon_044 (SP63) 0.0344202315683673 0.433314118872006 0.0794348258440535 0.936686769129766 1 FALSE Fretibacterium fastidiosum (SP64) -0.887608858670908 0.49445597353783 -1.79512212648594 0.0726342441638516 1 FALSE Fusobacterium sp._oral_taxon_203 (SP65) 0.710737175716236 0.398454097282522 1.78373664761763 0.0744664681745531 1 FALSE Fretibacterium sp._oral_taxon_362 (SP68) 0.390451451477642 0.401997642605287 0.971277963092481 0.331409879479143 1 FALSE Atopobium parvulum (SP69) -0.875410754997459 0.408931972410559 -2.14072465363154 0.0322962491731172 1 FALSE Campylobacter gracilis (SP7) -0.505474775771097 0.448576701969864 -1.12684134853944 0.259809564830717 1 FALSE Leptotrichia hongkongensis (SP70) -0.198197994830163 0.456389750804695 -0.434273544663756 0.664089812563883 1 FALSE Lachnoanaerobaculum saburreum (SP71) 0.242512361982616 0.457354468351602 0.530250339209935 0.59593837325867 1 FALSE Capnocytophaga sp._oral_taxon_324 (SP72) -0.944296380558292 0.236313029180875 -3.99595563491136 6.44338008586525e-05 0.00964424816394089 TRUE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP75) -0.187759886488647 0.26537488403146 -0.707526965763602 0.479239061173547 1 FALSE Catonella morbi (SP76) -0.760248929101265 0.502003110367469 -1.51443071447258 0.129916634148724 1 FALSE Leptotrichia sp._oral_taxon_223 (SP77) -0.170365123674313 0.332833853752852 -0.511862365421573 0.608747339014902 1 FALSE Alloprevotella tannerae (SP8) -1.43350167410134 0.4793436104528 -2.99055133487065 0.00278474317883548 0.378725072321625 FALSE Oribacterium sinus (SP81) 0.449040745240568 0.317678594162323 1.41350646059307 0.157506863123725 1 FALSE Streptococcus cristatus (SP82) 0.349653089344463 0.455677575021868 0.767325645392322 0.442887924410968 1 FALSE Ruminococcaceae_[G-2] sp._oral_taxon_085 (SP83) 0.298595913573109 0.337408932421682 0.884967423446675 0.376174201545226 1 FALSE Peptoniphilaceae_[G-1] sp._oral_taxon_113 (SP86) -0.00269478778302218 0.18192899335343 -0.0148123052480539 0.9881819224906 1 FALSE Prevotella sp._oral_taxon_472 (SP87) -0.333134526422461 0.368681344857913 -0.903583897229322 0.366216082997839 1 FALSE Prevotella denticola (SP88) -0.725928940393875 0.382370756534427 -1.8984949240712 0.0576309158026637 1 FALSE Filifactor alocis (SP89) -0.011615170656663 0.391195970088909 -0.0296914373990693 0.976313140878316 1 FALSE Clostridiales_[F-1][G-1] sp._oral_taxon_093 (SP9) 0.0905140036753043 0.338539284604438 0.267366322880561 0.789187126322629 1 FALSE Leptotrichia wadei (SP90) 0.00344519735742172 0.479939999579145 0.00717839179989745 0.994272521200347 1 FALSE Tannerella sp._oral_taxon_286 (SP91) -0.643765037383276 0.308908671137631 -2.08399794998455 0.0371603537373807 1 FALSE Alloprevotella rava (SP92) -0.680369599396076 0.300111929256591 -2.26705283285947 0.0233869984448584 1 FALSE Prevotella maculosa (SP93) -0.823474380007627 0.351813509204965 -2.34065593975777 0.0192498976354882 1 FALSE Atopobium rimae (SP94) -1.37605143784748 0.33442636241327 -4.1146619779544 3.87747199931134e-05 0.00585498271896012 TRUE TM7_[G-5] sp._oral_taxon_356 (SP95) -0.155588699228271 0.445440192362219 -0.349292007986902 0.726870097778603 1 FALSE Delftia acidovorans (SP97) 1.44862851158984 0.347936917892557 4.1634803238591 3.13433047088739e-05 0.00485821222987545 TRUE Mogibacterium timidum (SP98) -0.123068023973748 0.274476708560632 -0.448373286823215 0.653883817395081 1 FALSE Prevotella sp._oral_taxon_317_nov_97.556% (SPN16) -0.118445168432652 0.17358195839626 -0.682358751606319 0.495012131364024 1 FALSE Fusobacterium sp._oral_taxon_370_nov_97.863% (SPN17) 1.99496998294953 0.647813753747083 3.07954249413543 0.00207318792741983 0.288173121911356 FALSE Faecalibacterium prausnitzii_nov_82.077% (SPN18) -0.0432412985938386 0.132101853915098 -0.327333018517892 0.743416021586477 1 FALSE Fusobacterium sp._oral_taxon_370_nov_97.863% (SPN24) 2.08974277825303 0.504236268343757 4.14437221090248 3.40745905252529e-05 0.0052134123503637 TRUE Afipia sp._genosp._4_nov_80.610% (SPN53) -0.267108139317749 0.27574672537317 -0.968672026680534 0.332708853792125 1 FALSE Fusobacterium periodonticum_sp._HOT_204 (SPP11) -0.0221806253400234 0.153126968904247 -0.144851200926555 0.884828355986709 1 FALSE Fusobacterium nucleatum_subsp._polymorphum_periodonticum (SPP12) 0.209632413312883 0.387027464231365 0.54164738342074 0.588061443205285 1 FALSE Fusobacterium naviforme_nucleatum_subsp._vincentii (SPP13) -0.925296503936347 0.420719172910115 -2.19932098063435 0.0278551068958621 1 FALSE Fusobacterium nucleatum_subsp._polymorphum_sp._HOT_204 (SPP14) 0.0210034137400695 0.288874258431391 0.0727078066911176 0.94203863615318 1 FALSE Bradyrhizobium japonicum_sp._str._BTAi1 (SPP7) 0.254290829035548 0.157063562075228 1.61903133785894 0.105440520622001 1 FALSE Fusobacterium multispecies_sppn1_2_nov_97.863% (SPPN1) -0.27734785995005 0.151917386990093 -1.82564922583968 0.0679031158476356 1 FALSE Fusobacterium multispecies_sppn2_2_nov_97.582% (SPPN2) -0.400184648591115 0.170944022743792 -2.34102744376681 0.0192307534619441 1 FALSE