taxon lfc_(Intercept) lfc_GroupDay 15 Microbiome Only se_(Intercept) se_GroupDay 15 Microbiome Only W_(Intercept) W_GroupDay 15 Microbiome Only p_(Intercept) p_GroupDay 15 Microbiome Only q_(Intercept) q_GroupDay 15 Microbiome Only diff_(Intercept) diff_GroupDay 15 Microbiome Only Capnocytophaga sputigena (SP103) 0.174733246022969 -0.34807696589182 0.159611193588276 0.229082120389235 1.09474305714235 -1.51944187220024 0.273629219459822 0.128651309002853 1 1 FALSE FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP105) 0.196959017807771 -0.392528509461424 0.168562853783508 0.241713031010409 1.16846038962258 -1.62394434350757 0.242621107888327 0.104387687459853 1 1 FALSE FALSE Streptococcus cristatus_clade_578 (SP107) 0.164969090083003 -0.328548654011887 0.100684811877283 0.14583983644856 1.63847046051067 -2.25280459723892 0.101323591233343 0.0242714722103684 1 1 FALSE FALSE Porphyromonas gingivalis (SP111) -0.288372401558784 0.578134329271686 0.224722930338424 0.320978396083161 -1.28323532059904 1.8011627459248 0.19940964504084 0.0716772323135251 1 1 FALSE FALSE Dialister invisus (SP112) 0.265148867385412 -0.528908208616706 0.303741941521039 0.432575519833379 0.872941241033867 -1.22269565513192 0.382695105817375 0.221444668653851 1 1 FALSE FALSE Slackia exigua (SP119) -0.106803342305459 0.214996210765035 0.15335314271163 0.220252123615598 -0.696453560826565 0.976136834622601 0.486144830336729 0.328996659944379 1 1 FALSE FALSE Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yurii_subsps._yurii_&_margaretiae (SP12) 0.107086001960172 -0.212782477766226 0.217025774068978 0.310111822466757 0.493425273654992 -0.686147584034902 0.621712128088638 0.492620047165007 1 1 FALSE FALSE Fusobacterium periodonticum (SP121) 0.159877390905269 -0.31836525565642 0.134577007457537 0.193756939914864 1.18799930185485 -1.64311665840877 0.234833684749884 0.100358798856323 1 1 FALSE FALSE Gemella morbillorum (SP123) 0.00227754439892268 -0.00316556264372767 0.0974426277491471 0.141232862231104 0.0233731832929005 -0.0224137824138107 0.981352595793096 0.98211788633771 1 1 FALSE FALSE Aggregatibacter sp._HMT_512 (SP124) -0.199129532947668 0.399648592049454 0.335992947945919 0.478139438492734 -0.592659858384051 0.835841095453847 0.553408810830649 0.403244303956197 1 1 FALSE FALSE Arachnia propionica (SP125) -0.518413934536976 1.03821739522807 0.644516733524799 0.914229727395698 -0.804345190080358 1.13561981646076 0.421197645937735 0.256115711685739 1 1 FALSE FALSE Schaalia sp._HMT_180 (SP129) 0.064411685349599 -0.127433844545079 0.225168993632646 0.321608157710006 0.28605930288379 -0.396239465604558 0.774832701210634 0.691928379521941 1 1 FALSE FALSE Prevotella sp._HMT_317 (SP13) -0.0704740672299624 0.142337660614043 0.11300867378758 0.163294736454315 -0.623616443481421 0.87166104495882 0.532879509024514 0.383393317633207 1 1 FALSE FALSE Streptococcus sp._HMT_423 (SP130) -0.163251587025275 0.327892700204669 0.180527619703745 0.258596664087355 -0.90430255100676 1.26796956705484 0.365834994481121 0.204808818770536 1 1 FALSE FALSE Streptococcus salivarius (SP131) 0.258495026899216 -0.515600527644313 0.324590323597626 0.462029070752514 0.79637317599047 -1.11594823850488 0.425815164506246 0.264444291663675 1 1 FALSE FALSE Actinomyces sp._HMT_169 (SP138) 0.589290265173852 -1.17719100419359 0.943494615836598 1.33696166289761 0.624582541630434 -0.880497202621541 0.532245080921511 0.378590019927362 1 1 FALSE FALSE Streptococcus oralis (SP140) 0.124340268813273 -0.247291011472429 0.141960334775589 0.204176513251402 0.875880357776204 -1.2111628685124 0.381095078747134 0.225832990504786 1 1 FALSE FALSE Ottowia sp._HMT_894 (SP141) -1.00804604254239 2.0174816112389 0.495659472819791 0.703792190405337 -2.03374715468999 2.86658709593945 0.0419770951264352 0.00414923970519328 1 0.369282333762202 FALSE FALSE Tannerella forsythia (SP142) -0.274387901816606 0.55016532978733 0.367436021292263 0.522568399757053 -0.746763751827028 1.05281017765924 0.455206179616966 0.292427999435086 1 1 FALSE FALSE Porphyromonas endodontalis (SP149) -0.241890995762126 0.48517151767837 0.153064816035971 0.219845299363005 -1.58031742386362 2.20687692247294 0.114034191590356 0.0273226591033368 1 1 FALSE FALSE Prevotella oris (SP154) 0.602807070491421 -1.20422461482872 0.863856085641645 1.22435330832611 0.697809601056031 -0.983559734465127 0.48529627396176 0.325332031244154 1 1 FALSE FALSE Fretibacterium fastidiosum (SP162) -0.312918921436248 0.627227369026614 0.296896936005884 0.422905979328382 -1.05396480558508 1.48313667738327 0.291899030620432 0.13803810102849 1 1 FALSE FALSE Solobacterium moorei (SP164) -0.11274512114678 0.226879768447677 0.202421182565826 0.289495905192979 -0.556982820264455 0.783706312862831 0.577539167049602 0.433212457464686 1 1 FALSE FALSE Porphyromonas pasteri (SP17) -0.518413934536976 1.03821739522807 0.470973299757859 0.668897961382244 -1.10072892625443 1.55213119962669 0.271014652871372 0.120630834063442 1 1 FALSE FALSE Prevotella sp._HMT_300 (SP172) 0.685753499889896 -1.37011747362567 0.480626299967938 0.682542414771951 1.42679145925981 -2.00737337925505 0.153640013714161 0.0447099211586837 1 1 FALSE FALSE Porphyromonas catoniae (SP18) -0.189407643218642 0.380204812591403 0.42601058360002 0.605347098682944 -0.444607834899418 0.628077368205144 0.656603184444511 0.529953258117193 1 1 FALSE FALSE Eikenella corrodens (SP185) -0.147631119842472 0.296651765839062 0.2775009110349 0.395508569938995 -0.532002288900252 0.750051423373252 0.594724410213852 0.453223734345832 1 1 FALSE FALSE Actinomyces johnsonii (SP189) 0.102812727910024 -0.20423592966593 0.258759532776746 0.369039347865323 0.397329237716352 -0.55342589034832 0.691124689559128 0.5799718144617 1 1 FALSE FALSE Abiotrophia defectiva (SP190) 0.370517795744637 -0.739646065335155 0.318083141874841 0.452835703369646 1.16484574932433 -1.63336516937886 0.244081436518823 0.10239221796718 1 1 FALSE FALSE Streptococcus chosunense (SP191) -0.0773858367026628 0.156161199559443 0.341501860751777 0.485923091831152 -0.226604436451113 0.321370196610672 0.820731342240669 0.747929865874549 1 1 FALSE FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP192) -0.147307977863602 0.296005481881322 0.164570300991213 0.236079417875179 -0.895106692862321 1.25383857917604 0.370730056538654 0.20990068353647 1 1 FALSE FALSE Schaalia odontolytica (SP198) -0.338084420155316 0.677558366464749 0.501684097252336 0.712308307848363 -0.67389901734371 0.951215027256132 0.50037551690668 0.341495231587028 1 1 FALSE FALSE Veillonella dispar (SP20) 0.41506320812624 -0.828736890098362 0.130963044526682 0.188655955721237 3.16931550901504 -4.39284774726606 0.00152798428686029 1.11875478459579e-05 0.148214475825448 0.00108519214105792 FALSE TRUE Rothia aeria (SP205) 0.724039390357024 -1.44668925455993 0.159611193588276 0.229082120389235 4.53626950641518 -6.31515568348088 5.72580027556658e-06 2.69889641164179e-10 0.000561128427005525 2.64491848340896e-08 TRUE TRUE Bacteroides heparinolyticus (SP208) 0.00214130725684036 -0.00289308835956347 0.125136887572915 0.18043065700503 0.017111719001263 -0.0160343503015833 0.986347489870705 0.987206987635621 1 1 FALSE FALSE Parvimonas micra (SP214) -0.0278645125256687 0.0571185512054559 0.163617268600986 0.234734678545617 -0.170303005079629 0.243332393659746 0.864771848073168 0.807747911867834 1 1 FALSE FALSE Fretibacterium sp._HMT_360 (SP23) -0.237934690541068 0.477258907236255 0.123824790877454 0.178577831492655 -1.92154324554075 2.67255405246583 0.054663255831309 0.00752762461080066 1 0.662430965750458 FALSE FALSE Filifactor alocis (SP234) -0.0744586443627281 0.150306814879574 0.417504181086245 0.59332480599918 -0.178342272331273 0.25332973332617 0.85845418238823 0.800013421422048 1 1 FALSE FALSE Schaalia cardiffensis (SP247) -0.655071944569078 1.31153341529227 0.423247296623797 0.601441653010897 -1.54772859695626 2.18064945905652 0.121687653976793 0.0292093539338365 1 1 FALSE FALSE Streptococcus constellatus (SP252) -0.122351297602032 0.246092121358183 0.127598908314099 0.183906846624821 -0.958874172346764 1.33813463650009 0.337622137438114 0.180852551677399 1 1 FALSE FALSE Schaalia sp._HMT_178 (SP255) -0.0704740672299626 0.142337660614043 0.704025409509119 0.9983649825934 -0.100101596161281 0.142570766298614 0.920263668145736 0.886629186694612 1 1 FALSE FALSE Peptostreptococcus stomatis (SP256) 0.321780774826623 -0.642172023499129 0.107437545858078 0.155412159529232 2.99504956350816 -4.13205778392354 0.0027440025008074 3.59530004357281e-05 0.26342424007751 0.0034514880418299 FALSE TRUE Aggregatibacter segnis (SP26) -0.340163605599546 0.68171673735321 0.136931265323303 0.197079549337786 -2.48419237780649 3.45909425733857 0.0129845640323916 0.000541995196074456 1 0.0509475484309989 FALSE FALSE Streptococcus sp._HMT_064 (SP262) 0.108123458664934 -0.214857391175751 0.318941292337092 0.454048083751376 0.339007401245048 -0.473204047907403 0.734604154590009 0.636067610107383 1 1 FALSE FALSE Gemella haemolysans (SP265) -0.171840344257004 0.345070214668125 0.159611193588276 0.229082120389235 -1.076618377407 1.50631666095029 0.281650790669358 0.131985903107409 1 1 FALSE FALSE Prevotella buccae (SP269) 0.284054015463048 -0.566718504771979 0.122268227395983 0.176379540923974 2.32320384054559 -3.21306259106465 0.0201682045629604 0.00131327666408225 1 0.118194899767403 FALSE FALSE Streptococcus anginosus (SP271) -0.140024899354271 0.281439324862661 0.266423533731443 0.379863088819461 -0.525572562577814 0.740896741869074 0.599185224435958 0.45875605115306 1 1 FALSE FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP277) 0.61104310942126 -1.2206966926884 0.860104304987321 1.21904839115201 0.710429079215302 -1.00135212149768 0.477438095866861 0.316656602604668 1 1 FALSE FALSE Serratia marcescens (SP278) -0.46990304868432 0.941195623522759 0.361695534347718 0.514456693134384 -1.2991674047946 1.82949436965903 0.193886484963962 0.0673255820085821 1 1 FALSE FALSE Neisseria flava (SP28) -0.181208368957078 0.363806264068275 0.104381380839816 0.151082963485554 -1.73602195620655 2.4079899922208 0.0825599524038274 0.0160406207283828 1 1 FALSE FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP284) 0.126674564710814 -0.25195960326751 0.108991977238786 0.157612563436734 1.16223751435656 -1.59860101107135 0.245139000273409 0.109909284941858 1 1 FALSE FALSE Neisseria subflava (SP286) 0.151894428796093 -0.302399331438068 0.115916011289394 0.16740488534619 1.31038350186909 -1.80639490187345 0.190066131979206 0.0708566773513017 1 1 FALSE FALSE Streptococcus gordonii (SP289) 0.354034987214273 -0.706680448274428 0.239172830614471 0.341380424008169 1.48024751099322 -2.0700672873308 0.138807205354858 0.0384460437535478 1 1 FALSE FALSE Enterobacter cloacae (SP29) -0.807756614724902 1.61690275560392 0.641370454234733 0.90978152648312 -1.25942286457317 1.77724289682411 0.207877635125463 0.0755282843806775 1 1 FALSE FALSE Neisseria flavescens (SP294) 0.184938744653033 -0.368487963151947 0.338757480305658 0.482045477747285 0.545932578333516 -0.764425723635 0.585112283231714 0.444613584222553 1 1 FALSE FALSE Saccharibacteria_(TM7)_[G-4] bacterium_HMT_355 (SP295) 0.336223003948513 -0.671056481742907 0.315472680390876 0.449147720911498 1.06577534235905 -1.4940663182729 0.286525209856302 0.135158286374093 1 1 FALSE FALSE Neisseria sicca (SP296) -0.216057668510006 0.43350486317413 0.113341706793884 0.163765651783129 -1.90625035233424 2.64710492373706 0.0566177322531821 0.00811841595543209 1 0.706302188122592 FALSE FALSE Cardiobacterium valvarum (SP297) 0.331885410878563 -0.662381295603007 0.580259718071966 0.823385921324205 0.571960107762299 -0.804460312532108 0.567349000935562 0.421131181095896 1 1 FALSE FALSE Fusobacterium nucleatum_subsp._animalis (SP3) 0.857918949446114 -1.71444837273811 1.32302596795289 1.87364448624822 0.64845208652523 -0.915033980737253 0.516692590920636 0.36017379135276 1 1 FALSE FALSE Alloprevotella tannerae (SP32) 0.292739714679595 -0.584089903205072 0.266408387383275 0.379841697262521 1.09883820684083 -1.53771928520367 0.271838643708358 0.124117266195402 1 1 FALSE FALSE Streptococcus oralis_subsp._tigurinus_clade_071 (SP330) 0.440648947832999 -0.87990836951188 0.359920554606168 0.51194855922285 1.2242950345394 -1.71874371684453 0.220840949427051 0.0856610479823466 1 1 FALSE FALSE Streptococcus sp._HMT_056 (SP334) -0.0704740672299622 0.142337660614043 0.815365666988479 1.15578976106288 -0.0864324683798074 0.123151861531588 0.931122637462542 0.901986844236394 1 1 FALSE FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP34) 0.246580836176395 -0.491772146198671 0.172920974718717 0.247862641879312 1.42597412822532 -1.98405109567953 0.153875810164613 0.0472501441267913 1 1 FALSE FALSE Leptotrichia sp._HMT_392 (SP35) 0.377465800077051 -0.753542073999985 0.6445167335248 0.914229727395699 0.585657098478619 -0.824237116142074 0.55810596956127 0.409804841400652 1 1 FALSE FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP359) -0.0500022773619164 0.101394080877951 0.477020708043114 0.677445904546597 -0.104822026630754 0.149671110560203 0.916517031609378 0.881024101827771 1 1 FALSE FALSE Prevotella nigrescens (SP36) 0.0508343654049068 -0.100279204655695 0.163244035592037 0.234208044268072 0.311401058057318 -0.428162939360514 0.755495749649928 0.668532496263222 1 1 FALSE FALSE Rothia dentocariosa (SP366) -0.472833545338488 0.947056616831093 0.580259718071966 0.823385921324205 -0.814865362202939 1.15019772904059 0.415149382017102 0.250062441371617 1 1 FALSE FALSE Centipeda periodontii (SP37) -0.00375433102445782 0.00889818820303401 0.414275919078969 0.588762300569534 -0.00906239260250648 0.0151133797025156 0.992769355830465 0.987941726722459 1 1 FALSE FALSE Actinomyces naeslundii (SP38) 0.323410022959642 -0.645430519765167 1.35862387192304 1.92398385344408 0.238042352738789 -0.335465663399303 0.811848245419409 0.737273842207387 1 1 FALSE FALSE Streptococcus intermedius (SP384) 0.377465800077051 -0.753542073999985 0.644516733524799 0.914229727395698 0.585657098478619 -0.824237116142074 0.55810596956127 0.409804841400652 1 1 FALSE FALSE Peptoanaerobacter stomatis (SP387) -0.078166981896651 0.15772348994742 0.532068810349746 0.755259912109952 -0.146911415170661 0.208833392873709 0.883201941686848 0.834578302281108 1 1 FALSE FALSE Neisseria elongata (SP45) -0.393302804993688 0.787995136141496 0.466346827967258 0.662358564117841 -0.84336974416239 1.18968060327111 0.399021687744418 0.234171951913095 1 1 FALSE FALSE Treponema maltophilum (SP46) -0.421188279136716 0.843766084427549 0.144461326615864 0.207705641781736 -2.91557809279084 4.06231663805361 0.00355030244270328 4.85881099066797e-05 0.337278732056812 0.00461587044113457 FALSE TRUE Selenomonas infelix (SP49) 0.330662914555015 -0.659936302955912 0.140271666967778 0.201793568105519 2.35730366440268 -3.27035350606827 0.018408186750481 0.00107413160803127 1 0.0988201079388771 FALSE FALSE Fusobacterium nucleatum_subsp._vincentii (SP54) -0.325210005435268 0.651809537024653 0.35706180421186 0.507909040210273 -0.910794718446858 1.28331942419219 0.362403545839457 0.19938019022181 1 1 FALSE FALSE Leptotrichia sp._HMT_215 (SP57) 0.27609952305001 -0.550809519945902 0.501684222438714 0.71230848480666 0.550345238500576 -0.773273843699064 0.582082601216838 0.439360332119676 1 1 FALSE FALSE Streptococcus downii (SP58) 0.331398064843646 -0.661406603533172 0.142555438046434 0.205016270262486 2.32469605779403 -3.22611762806123 0.0200882182324408 0.00125481774706789 1 0.114188414983178 FALSE FALSE Treponema denticola (SP60) 0.0214571278013671 -0.0415247294486158 0.284038864550058 0.404743220851055 0.0755429290824584 -0.102595243871662 0.939782742626285 0.918284217761958 1 1 FALSE FALSE Veillonella parvula (SP63) 0.378456766298114 -0.755524006442108 0.201842569473217 0.288679196183103 1.87500965374072 -2.61717510798005 0.0607913954527989 0.00886608453729026 1 0.762483270206962 FALSE FALSE Lautropia mirabilis (SP64) -0.0685936963955274 0.138576918945172 0.1877990379092 0.268858340474497 -0.365250520765139 0.515427264412193 0.714924409310551 0.606254484415162 1 1 FALSE FALSE Fusobacterium nucleatum (SP7) -0.29601062335196 0.593410772858038 0.580430997452085 0.82362806083775 -0.509984174951642 0.720483918741735 0.610062548611614 0.471227097480974 1 1 FALSE FALSE Lachnoanaerobaculum umeaense (SP70) -0.233555363739885 0.468500253633888 1.7898459923462 2.53379086536707 -0.130489083831023 0.184900916661099 0.89617949014108 0.8533067519974 1 1 FALSE FALSE Haemophilus parainfluenzae (SP72) 0.0252739958340639 -0.0491584655140098 1.46292377836892 2.07147643650267 0.0172763586235798 -0.0237311246450891 0.986216145874484 0.981067079115633 1 1 FALSE FALSE Catonella morbi (SP76) 0.0715349221045494 -0.14168031805498 0.19513847669284 0.279216768070206 0.366585428547492 -0.507420521461506 0.713928278990432 0.611859789754123 1 1 FALSE FALSE Leptotrichia buccalis (SP82) -0.518413934536976 1.03821739522807 0.644516733524799 0.914229727395698 -0.804345190080358 1.13561981646076 0.421197645937735 0.256115711685739 1 1 FALSE FALSE Campylobacter showae (SP9) -0.0134579005185094 0.0283053271911369 0.132331463097498 0.190587516895829 -0.101698418527981 0.148516165445442 0.918996057470856 0.881935429246652 1 1 FALSE FALSE Prevotella intermedia (SP92) 0.227525919413602 -0.453662312673086 0.128736632103228 0.185513050916367 1.76737511069234 -2.44544688598543 0.0771654283756435 0.0144672756213117 1 1 FALSE FALSE Streptococcus sanguinis (SP95) -0.0260567050204963 0.0535029361951102 0.243184805218971 0.347045468469575 -0.107147751262806 0.154166935044711 0.914671765155797 0.877478112480304 1 1 FALSE FALSE Granulicatella adiacens (SP96) 0.158579270132632 -0.315769014111145 0.408902851938786 0.581168629771402 0.387816493283768 -0.543334581282115 0.698151839075269 0.586899458596014 1 1 FALSE FALSE Enterobacter cancerogenus (SP97) -0.808042844122295 1.61747521439871 0.621913947751809 0.882274243349881 -1.29928400390976 1.83330209012717 0.193846481877305 0.0667576587406286 1 1 FALSE FALSE Treponema socranskii (SP98) 0.0727799401230755 -0.144170354092033 0.208584173730658 0.298195236875436 0.348923596749269 -0.483476381456278 0.727146669539773 0.628757525892113 1 1 FALSE FALSE Prevotella sp._HMT_305_nov_93.456% (SPN122) -0.691700729676963 1.38479098550804 0.889072040290685 1.26000817889121 -0.778003017000522 1.0990333306619 0.436567234610567 0.271753527875131 1 1 FALSE FALSE Actinomyces israelii_nov_96.838% (SPN134) 0.52899975096963 -1.05660997578514 0.858357143273243 1.2165779539165 0.616293293666029 -0.868509882481121 0.537700964219608 0.385115264611991 1 1 FALSE FALSE Streptococcus sanguinis_nov_97.782% (SPN153) -0.158773237120565 0.318936000395247 0.272140830274574 0.387937936590892 -0.583423064302302 0.822131506905414 0.559608535024284 0.411002055449024 1 1 FALSE FALSE Bergeyella zoohelcum_nov_93.004% (SPN8) 0.593287443347795 -1.18518536054147 1.45566354977522 2.06120955816438 0.407571820726986 -0.574995082788645 0.683588055999716 0.565294622557901 1 1 FALSE FALSE Veillonella dispar_parvula (SPP11) 0.360196556427697 -0.719003586701277 0.145791941406119 0.209583214301525 2.47062048117139 -3.43063536408433 0.0134878876196588 0.000602169446621889 1 0.0560017585358357 FALSE FALSE Serratia marcescens_nematodiphila (SPP15) -0.435056773801673 0.871503073757462 0.359686871266649 0.511618354417571 -1.20954310139151 1.70342417591641 0.226454262629158 0.0884887165967801 1 1 FALSE FALSE Fusobacterium nucleatum_nucleatum_subsp._animalis (SPP21) 0.246448087448048 -0.491506648741979 0.331413898598519 0.471669756108863 0.743626288729068 -1.04205674070936 0.457102594497278 0.2973853731587 1 1 FALSE FALSE