QIIME 2

ANCOM Volcano Plot

ANCOM statistical results

W
Veillonella multispecies_spp14_3 (SPP14) 16
Oribacterium sinus (SP51) 3
Haemophilus parainfluenzae (SP59) 2
Fusobacterium nucleatum (SP25) 2
Selenomonas sp. HMT136 (SP38) 2
Capnocytophaga leadbetteri (SP14) 2
Campylobacter gracilis (SP269) 1
Granulicatella adiacens (SP9) 1
Fusobacterium nucleatum_subsp._animalis (SP74) 1
Actinomyces graevenitzii (SP44) 1
Streptococcus oralis_subsp._dentisani_clade_398 (SP417) 1
Gemella haemolysans (SP17) 1
Rothia mucilaginosa (SP170) 1
Cutibacterium acnes (SP175) 1
Selenomonas artemidis (SP21) 1
Rothia aerolata (SP202) 1
Kingella sp. HMT932 nov_97.955% (SPN116) 1
Prevotella nanceiensis (SP192) 1
Actinomyces sp. HMT175 nov_97.551% (SPN188) 1
Staphylococcus multispecies_spp19_2 (SPP19) 1
Streptococcus multispecies_spp33_2 (SPP33) 1
Streptococcus multispecies_spp10_2 (SPP10) 1
Afipia multispecies_spp11_2 (SPP11) 1
Streptococcus sp. HMT064 (SP50) 0
Schaalia odontolyticus (SP5) 0
Lactobacillus acidophilus (SP284) 0
Haemophilus parahaemolyticus (SP49) 0
Streptococcus sp. HMT423 (SP48) 0
Schaalia odontolytica (SP3) 0
Prevotella salivae (SP30) 0
Schaalia lingnae_[Not_Validly_Published] (SP47) 0
Streptococcus oralis_subsp._tigurinus_clade_070 (SP46) 0
Rothia aeria (SP308) 0
Lautropia mirabilis (SP319) 0
Schaalia sp. HMT172 (SP32) 0
Leptotrichia sp. HMT215 (SP43) 0
Capnocytophaga granulosa (SP35) 0
Kingella oralis (SP408) 0
Streptococcus sp. HMT074 (SP40) 0
Schaalia sp. HMT180 (SP4) 0
Cryptobacterium curtum (SP383) 0
Neisseria mucosa (SP373) 0
Propionibacterium acidifaciens (SP372) 0
Porphyromonas endodontalis (SP340) 0
Pseudoramibacter alactolyticus (SP341) 0
Streptococcus peroris (SP367) 0
Streptococcus oralis_subsp._tigurinus_clade_071 (SP365) 0
Megasphaera micronuciformis (SP36) 0
Veillonella atypica (SP37) 0
Streptococcus salivarius (SP1) 0
Prevotella oris (SP53) 0
Selenomonas sp. HMT137 nov_97.228% (SPN95) 0
Streptococcus sp. HMT057 (SP89) 0
Prevotella histicola (SP94) 0
Capnocytophaga sputigena (SP95) 0
Leptotrichia sp. HMT215 nov_97.614% (SPN106) 0
Actinomyces graevenitzii_nov_97.737% (SPN63) 0
Streptococcus sanguinis_nov_97.782% (SPN76) 0
Streptococcus multispecies_spp1_2 (SPP1) 0
Capnocytophaga gingivalis (SP54) 0
Veillonella multispecies_spp15_2 (SPP15) 0
Streptococcus multispecies_spp2_3 (SPP2) 0
Lachnoanaerobaculum multispecies_spp22_2 (SPP22) 0
Peptostreptococcaceae_[XI][G-4] multispecies_spp28_2 (SPP28) 0
Oribacterium multispecies_spp3_2 (SPP3) 0
Streptococcus multispecies_spp32_3 (SPP32) 0
Veillonella rogosae (SP85) 0
Leptotrichia sp. HMT221 (SP84) 0
Leptotrichia hongkongensis (SP8) 0
Ligilactobacillus salivarius (SP77) 0
Streptococcus vestibularis (SP75) 0
Eikenella corrodens (SP71) 0
Abiotrophia defectiva (SP70) 0
Stomatobaculum longum (SP68) 0
Lactobacillus kalixensis (SP66) 0
Streptococcus parasanguinis_clade_411 (SP65) 0
Lachnoanaerobaculum orale (SP64) 0
Parvimonas micra (SP63) 0
Lachnoanaerobaculum gingivalis (SP62) 0
Neisseria flava (SP283) 0
Streptococcus sanguinis (SP6) 0
Peptostreptococcus stomatis (SP57) 0
Fusobacterium nucleatum_subsp._vincentii (SP56) 0
Streptococcus sp. HMT066 (SP60) 0
Bifidobacterium scardovii (SP259) 0
Streptococcus intermedius (SP281) 0
Actinomyces sp. HMT175 (SP145) 0
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP148) 0
Prevotella melaninogenica (SP15) 0
Streptococcus oralis_subsp._dentisani_clade_058 (SP150) 0
Actinomyces oris (SP152) 0
Fusobacterium periodonticum (SP154) 0
Alloprevotella sp. HMT308 (SP155) 0
Solobacterium moorei (SP156) 0
Alloprevotella sp. HMT473 (SP158) 0
Prevotella sp. HMT317 (SP159) 0
Lancefieldella parvula (SP16) 0
Bifidobacterium dentium (SP161) 0
Streptococcus downii (SP166) 0
Gemella morbillorum (SP168) 0
Streptococcus sp. HMT056 (SP169) 0
Saccharibacteria_(TM7)_[G-3] bacterium HMT351 (SP171) 0
Lactobacillus crispatus (SP147) 0
Mogibacterium diversum (SP140) 0
Leptotrichia sp. HMT212 (SP176) 0
Prevotella pallens (SP139) 0
Leptotrichia wadei (SP107) 0
Campylobacter concisus (SP109) 0
Filifactor alocis (SP11) 0
Saccharibacteria_(TM7)_[G-6] bacterium HMT870 (SP113) 0
Lactobacillus ultunensis (SP114) 0
Prevotella sp. HMT309 (SP119) 0
Leptotrichia sp. HMT417 (SP12) 0
Actinomyces sp. HMT169 (SP120) 0
Actinomyces israelii (SP126) 0
Streptococcus constellatus (SP127) 0
Ruminococcaceae_[G-1] bacterium HMT075 (SP128) 0
Peptostreptococcaceae_[XI][G-1] [Eubacterium]_sulci (SP129) 0
Prevotella jejuni (SP13) 0
Campylobacter showae (SP132) 0
Treponema socranskii (SP136) 0
Streptococcus sp. HMT061 (SP173) 0
Arachnia propionica (SP177) 0
Porphyromonas gingivalis (SP268) 0
Streptococcus gordonii (SP222) 0
Veillonella parvula (SP23) 0
Neisseria perflava (SP233) 0
Ruminococcaceae_[G-2] bacterium HMT085 (SP235) 0
Bifidobacterium breve (SP237) 0
Bifidobacterium longum (SP238) 0
Veillonella dispar (SP24) 0
Alloscardovia omnicolens (SP244) 0
Bergeyella sp. HMT322 (SP246) 0
Streptococcus periodonticum (SP249) 0
Streptococcus chosunense (SP250) 0
Streptococcus infantis_clade_431 (SP251) 0
Parascardovia denticolens (SP252) 0
Cardiobacterium hominis (SP255) 0
Gemella sanguinis (SP103) 0
Stomatobaculum sp. HMT097 (SP26) 0
Selenomonas sp. HMT137 (SP223) 0
Prevotella intermedia (SP221) 0
Streptococcus mitis (SP18) 0
Actinomyces sp. HMT171 (SP220) 0
Haemophilus sp. HMT036 (SP180) 0
Streptococcus anginosus (SP183) 0
Streptococcus oralis (SP184) 0
Porphyromonas pasteri (SP19) 0
Rothia dentocariosa (SP194) 0
Streptococcus mutans (SP196) 0
Lachnoanaerobaculum umeaense (SP2) 0
Bilophila wadsworthia (SP200) 0
Neisseria flavescens (SP206) 0
Streptococcus australis (SP209) 0
Actinomyces sp. HMT170 (SP213) 0
Fusobacterium sp. HMT204 (SP214) 0
Lachnospiraceae_[G-2] bacterium HMT096 (SP216) 0
Schaalia meyeri (SP218) 0
Catonella morbi (SP219) 0
Streptococcus multispecies_sppn6_2_nov_97.976% (SPPN6) 0
Download table as TSV

Percentile abundances of features by group

Percentile 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0
Group Generalized periodontitis I-III AB Generalized periodontitis I-III AB Generalized periodontitis I-III AB Generalized periodontitis I-III AB Generalized periodontitis I-III AB Generalized periodontitis IV C Generalized periodontitis IV C Generalized periodontitis IV C Generalized periodontitis IV C Generalized periodontitis IV C Localized Periodontitis Localized Periodontitis Localized Periodontitis Localized Periodontitis Localized Periodontitis Reduced periodontium Reduced periodontium Reduced periodontium Reduced periodontium Reduced periodontium
Veillonella multispecies_spp14_3 (SPP14) 1.0 16.50 295.5 642.75 2345.0 431.0 1118.0 1431.0 2634.0 3343.0 948.0 1382.5 1817.0 2163.5 2510.0 1.0 1.0 1.0 8.0 15.0
Oribacterium sinus (SP51) 1.0 1.00 1.0 144.25 1872.0 7.0 254.0 553.0 1233.0 3141.0 53.0 172.5 292.0 817.5 1343.0 1.0 1.0 1.0 206.5 412.0
Haemophilus parainfluenzae (SP59) 22.0 126.75 8334.0 17181.00 24302.0 13.0 291.0 1592.0 3956.0 5141.0 1.0 1.0 1.0 1.0 1.0 1.0 180.5 360.0 16529.5 32699.0
Fusobacterium nucleatum (SP25) 1.0 15.75 31.0 40.25 974.0 1.0 1.0 1.0 12.0 153.0 1.0 1.0 1.0 73.0 145.0 1.0 103.5 206.0 772.0 1338.0
Selenomonas sp. HMT136 (SP38) 1.0 1.00 1.0 1.00 10.0 1.0 1.0 1.0 14.0 37.0 4.0 45.5 87.0 148.0 209.0 1.0 1.0 1.0 58.5 116.0
Capnocytophaga leadbetteri (SP14) 1.0 1.00 1.0 12.25 51.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 555.5 1110.0
Campylobacter gracilis (SP269) 1.0 1.00 2.5 7.75 37.0 1.0 1.0 1.0 1.0 31.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 6.0 11.0
Granulicatella adiacens (SP9) 1018.0 3017.50 4823.0 6908.25 11196.0 683.0 1137.0 3269.0 4856.0 7852.0 1175.0 2218.5 3262.0 3707.5 4153.0 4138.0 5281.5 6425.0 11945.5 17466.0
Fusobacterium nucleatum_subsp._animalis (SP74) 1.0 1.00 1.0 1.00 83.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 20.5 40.0 1.0 1.0 1.0 1.0 1.0
Actinomyces graevenitzii (SP44) 1.0 5.50 360.5 1526.25 2510.0 415.0 1467.0 5463.0 8193.0 12288.0 7.0 8.0 9.0 1543.5 3078.0 1.0 1.0 1.0 137.5 274.0
Streptococcus oralis_subsp._dentisani_clade_398 (SP417) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 467.0 933.0
Gemella haemolysans (SP17) 25.0 342.75 1673.5 2834.00 7652.0 1.0 37.0 70.0 348.0 5601.0 1.0 10.5 20.0 210.0 400.0 1144.0 1420.0 1696.0 1802.0 1908.0
Rothia mucilaginosa (SP170) 39262.0 44498.75 47045.5 64398.75 76415.0 8911.0 13721.0 18017.0 21801.0 82470.0 5726.0 15830.5 25935.0 28880.0 31825.0 22153.0 26906.0 31659.0 37150.0 42641.0
Cutibacterium acnes (SP175) 1.0 4.00 7.0 26.50 119.0 1.0 1.0 5.0 9.0 98.0 1.0 4.0 7.0 9.5 12.0 23.0 24.0 25.0 67.5 110.0
Selenomonas artemidis (SP21) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 11.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 19.0 37.0
Rothia aerolata (SP202) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 16.0 31.0
Kingella sp. HMT932 nov_97.955% (SPN116) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 308.0 615.0
Prevotella nanceiensis (SP192) 1.0 1.00 2.5 424.00 1205.0 1.0 1.0 1.0 23.0 520.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 31.0 61.0
Actinomyces sp. HMT175 nov_97.551% (SPN188) 1.0 1.00 1.0 351.25 1165.0 1.0 1.0 1.0 1.0 46.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Staphylococcus multispecies_spp19_2 (SPP19) 1.0 5.00 8.0 29.00 59.0 1.0 1.0 9.0 19.0 82.0 1.0 1.0 1.0 1.0 1.0 17.0 48.5 80.0 103.0 126.0
Streptococcus multispecies_spp33_2 (SPP33) 1.0 481.00 1263.5 2027.25 8112.0 1.0 1072.0 1678.0 3687.0 4301.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 68.0 135.0
Streptococcus multispecies_spp10_2 (SPP10) 1.0 3.00 33.5 505.00 10562.0 1.0 1.0 1.0 1.0 56.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 6.5 12.0
Afipia multispecies_spp11_2 (SPP11) 1.0 1.00 1.0 18.25 1209.0 1.0 1.0 7.0 12.0 21.0 1.0 1.0 1.0 1.0 1.0 14.0 17.0 20.0 30.0 40.0
Streptococcus sp. HMT064 (SP50) 1.0 1.00 1.0 121.75 4042.0 1.0 1.0 1.0 12.0 12024.0 1.0 1.0 1.0 16.5 32.0 1.0 163.5 326.0 2912.0 5498.0
Schaalia odontolyticus (SP5) 16.0 248.00 1949.5 3390.00 8266.0 401.0 722.0 2806.0 6919.0 14749.0 609.0 883.0 1157.0 4380.5 7604.0 1.0 550.0 1099.0 2386.0 3673.0
Lactobacillus acidophilus (SP284) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 15931.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 5.0 9.0
Haemophilus parahaemolyticus (SP49) 1.0 1.00 1.0 463.00 4154.0 1.0 1.0 1.0 1.0 1054.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 124.0 247.0
Streptococcus sp. HMT423 (SP48) 1.0 3.00 43.5 159.00 22093.0 1.0 1.0 1.0 72.0 389.0 1.0 25.5 50.0 50.5 51.0 1.0 1.0 1.0 625.5 1250.0
Schaalia odontolytica (SP3) 1.0 1.00 8.5 154.75 3216.0 1.0 206.0 344.0 1158.0 2308.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 908.5 1816.0
Prevotella salivae (SP30) 1.0 1.00 12.0 552.50 1574.0 1.0 25.0 195.0 435.0 1417.0 595.0 836.5 1078.0 1104.5 1131.0 1.0 1.0 1.0 82.5 164.0
Schaalia lingnae_[Not_Validly_Published] (SP47) 15.0 42.75 694.0 1586.75 1787.0 38.0 735.0 853.0 1157.0 2834.0 638.0 861.5 1085.0 1226.0 1367.0 1.0 38.0 75.0 7432.0 14789.0
Streptococcus oralis_subsp._tigurinus_clade_070 (SP46) 1.0 1.00 1.0 205.00 1405.0 1.0 1.0 1.0 1.0 1435.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 36.0 71.0
Rothia aeria (SP308) 1.0 1.00 1.0 1.00 24.0 1.0 1.0 1.0 1.0 21.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Lautropia mirabilis (SP319) 1.0 1.00 1.0 1.00 66.0 1.0 1.0 1.0 18.0 108.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 2.5 4.0
Schaalia sp. HMT172 (SP32) 1.0 1.00 1.0 1.00 2667.0 1.0 1.0 1.0 2517.0 10131.0 1.0 28.5 56.0 4468.5 8881.0 1.0 1.0 1.0 681.0 1361.0
Leptotrichia sp. HMT215 (SP43) 1.0 1.00 45.0 134.00 846.0 1.0 1.0 7.0 158.0 465.0 1.0 1.0 1.0 31.5 62.0 1.0 1.0 1.0 514.0 1027.0
Capnocytophaga granulosa (SP35) 1.0 1.00 1.0 1.00 71.0 1.0 1.0 1.0 1.0 9.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Kingella oralis (SP408) 1.0 1.00 1.0 1.00 13.0 1.0 1.0 1.0 21.0 203.0 1.0 1.0 1.0 1.0 1.0 1.0 3.5 6.0 58.5 111.0
Streptococcus sp. HMT074 (SP40) 1.0 17.25 67.0 1535.00 10378.0 1.0 1.0 1.0 840.0 1858.0 1.0 37.0 73.0 531.5 990.0 1.0 1.0 1.0 63.0 125.0
Schaalia sp. HMT180 (SP4) 1.0 1.00 1.0 10.75 653.0 1.0 1.0 1.0 47.0 1659.0 1.0 1.0 1.0 30.5 60.0 1.0 1.0 1.0 171.0 341.0
Cryptobacterium curtum (SP383) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 7.0 111.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Neisseria mucosa (SP373) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 7971.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Propionibacterium acidifaciens (SP372) 1.0 1.00 1.0 1.00 1072.0 1.0 1.0 1.0 1.0 13.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Porphyromonas endodontalis (SP340) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 296.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Pseudoramibacter alactolyticus (SP341) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 2.5 4.0 1.0 1.0 1.0 1.0 1.0
Streptococcus peroris (SP367) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1516.0 1.0 1.0 1.0 7.0 13.0 1.0 1.0 1.0 1.0 1.0
Streptococcus oralis_subsp._tigurinus_clade_071 (SP365) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 196.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Megasphaera micronuciformis (SP36) 1.0 3.25 46.0 454.00 953.0 1.0 64.0 174.0 831.0 2518.0 133.0 451.5 770.0 2861.0 4952.0 1.0 1.0 1.0 29.0 57.0
Veillonella atypica (SP37) 191.0 330.75 607.0 1828.25 3889.0 395.0 1614.0 3102.0 5833.0 7191.0 6118.0 6536.5 6955.0 11573.0 16191.0 1386.0 2579.5 3773.0 3878.0 3983.0
Streptococcus salivarius (SP1) 4145.0 10388.25 26807.0 41126.50 61815.0 1.0 32003.0 41012.0 46563.0 98871.0 49968.0 51757.5 53547.0 76790.5 100034.0 23499.0 46510.5 69522.0 74076.0 78630.0
Prevotella oris (SP53) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 10.0 126.0 1.0 1.0 1.0 3.0 5.0 1.0 1.0 1.0 216.0 431.0
Selenomonas sp. HMT137 nov_97.228% (SPN95) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 33.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sp. HMT057 (SP89) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 745.0 2203.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 159.0 317.0
Prevotella histicola (SP94) 1.0 42.75 133.0 404.75 871.0 1.0 1570.0 3808.0 5320.0 31863.0 1151.0 1411.5 1672.0 14608.5 27545.0 1.0 92.5 184.0 1783.0 3382.0
Capnocytophaga sputigena (SP95) 1.0 1.00 1.0 4.75 296.0 1.0 1.0 1.0 1.0 375.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 51.0 101.0
Leptotrichia sp. HMT215 nov_97.614% (SPN106) 1.0 1.00 1.0 1.00 68.0 1.0 1.0 1.0 1.0 33.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 147.0 293.0
Actinomyces graevenitzii_nov_97.737% (SPN63) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 7186.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sanguinis_nov_97.782% (SPN76) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 17.5 34.0 1.0 1.0 1.0 1.0 1.0
Streptococcus multispecies_spp1_2 (SPP1) 1.0 454.25 1847.0 3070.25 24960.0 31.0 420.0 1140.0 1919.0 3757.0 1.0 4.0 7.0 30.0 53.0 1.0 10.0 19.0 8538.5 17058.0
Capnocytophaga gingivalis (SP54) 1.0 2.00 33.0 153.25 767.0 1.0 1.0 1.0 19.0 113.0 1.0 1.0 1.0 3.0 5.0 1.0 1.0 1.0 64.0 127.0
Veillonella multispecies_spp15_2 (SPP15) 1.0 6.75 282.5 683.50 5556.0 98.0 1046.0 2230.0 3030.0 8819.0 1.0 89.5 178.0 1451.5 2725.0 89.0 523.5 958.0 3074.0 5190.0
Streptococcus multispecies_spp2_3 (SPP2) 1.0 1.00 1.0 1.00 24.0 1.0 1.0 1.0 35.0 75.0 1.0 1.0 1.0 345.5 690.0 1.0 1.0 1.0 730.5 1460.0
Lachnoanaerobaculum multispecies_spp22_2 (SPP22) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 13.0 475.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Peptostreptococcaceae_[XI][G-4] multispecies_spp28_2 (SPP28) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 16.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Oribacterium multispecies_spp3_2 (SPP3) 1.0 1.00 1.0 37.75 147.0 1.0 1.0 30.0 123.0 307.0 1.0 7.0 13.0 16.0 19.0 1.0 1.0 1.0 45.0 89.0
Streptococcus multispecies_spp32_3 (SPP32) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1097.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Veillonella rogosae (SP85) 1.0 1.00 1.0 191.50 9712.0 1.0 1.0 54.0 129.0 281.0 1.0 9.5 18.0 70.5 123.0 1.0 1.0 1.0 198.5 396.0
Leptotrichia sp. HMT221 (SP84) 1.0 1.00 1.0 1.00 48.0 1.0 1.0 116.0 669.0 1079.0 1.0 1.0 1.0 1374.0 2747.0 1.0 1.0 1.0 1.0 1.0
Leptotrichia hongkongensis (SP8) 1.0 1.00 1.0 45.25 346.0 1.0 1.0 1.0 1.0 1604.0 1.0 1.0 1.0 6.5 12.0 1.0 1.0 1.0 1.0 1.0
Ligilactobacillus salivarius (SP77) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 40.0 126.0 4512.0 1.0 1.0 1.0 130.5 260.0 1.0 1.0 1.0 2.5 4.0
Streptococcus vestibularis (SP75) 1.0 1.00 1.0 1.00 417.0 1.0 54.0 173.0 253.0 1420.0 1.0 1.0 1.0 134.0 267.0 1.0 1.0 1.0 1.0 1.0
Eikenella corrodens (SP71) 1.0 1.00 1.0 6.25 9.0 1.0 1.0 1.0 9.0 19.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Abiotrophia defectiva (SP70) 1.0 1.00 1.0 1.00 144.0 1.0 1.0 1.0 146.0 2283.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Stomatobaculum longum (SP68) 1.0 1.00 22.5 480.50 992.0 1.0 1.0 298.0 602.0 1435.0 394.0 508.0 622.0 857.0 1092.0 1.0 1.0 1.0 1.0 1.0
Lactobacillus kalixensis (SP66) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 3625.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus parasanguinis_clade_411 (SP65) 220.0 4056.50 10544.5 20085.75 30840.0 4997.0 7859.0 12451.0 17430.0 41947.0 56.0 5560.5 11065.0 16727.5 22390.0 8411.0 11431.0 14451.0 17500.5 20550.0
Lachnoanaerobaculum orale (SP64) 1.0 1.00 66.0 616.25 1379.0 1.0 131.0 247.0 574.0 8171.0 362.0 577.0 792.0 1096.0 1400.0 1.0 40.5 80.0 107.0 134.0
Parvimonas micra (SP63) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 30.0 1.0 1.0 1.0 61.0 121.0 1.0 1.0 1.0 1.0 1.0
Lachnoanaerobaculum gingivalis (SP62) 1.0 1.00 31.0 105.25 165.0 1.0 1.0 52.0 129.0 290.0 1.0 77.5 154.0 161.5 169.0 1.0 1.0 1.0 161.5 322.0
Neisseria flava (SP283) 1.0 1.00 1.0 7.00 99.0 1.0 1.0 1.0 1.0 10.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sanguinis (SP6) 1.0 20.25 214.0 948.50 6608.0 1.0 1.0 1.0 52.0 4619.0 1.0 50.5 100.0 124.5 149.0 1.0 1.0 1.0 1.0 1.0
Peptostreptococcus stomatis (SP57) 1.0 1.00 1.0 1.00 42.0 1.0 1.0 1.0 1.0 1311.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 23.0 45.0
Fusobacterium nucleatum_subsp._vincentii (SP56) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 220.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sp. HMT066 (SP60) 1.0 1.00 343.5 4370.00 6973.0 1.0 1.0 150.0 419.0 4987.0 1.0 1.0 1.0 4089.0 8177.0 1.0 1.0 1.0 809.0 1617.0
Bifidobacterium scardovii (SP259) 1.0 1.00 1.0 1.00 1297.0 1.0 1.0 1.0 1.0 21.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 65.0 129.0
Streptococcus intermedius (SP281) 1.0 1.00 1.0 1.00 102.0 1.0 1.0 1.0 1.0 72.0 1.0 1.0 1.0 58.0 115.0 1.0 1.0 1.0 1.0 1.0
Actinomyces sp. HMT175 (SP145) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 110.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP148) 1.0 1.00 1.0 33.25 159.0 1.0 27.0 215.0 617.0 2163.0 1.0 1.0 1.0 100.5 200.0 1.0 1.0 1.0 50.0 99.0
Prevotella melaninogenica (SP15) 1.0 92.75 492.0 3429.25 15637.0 1.0 631.0 1415.0 2601.0 9386.0 9.0 646.5 1284.0 8326.5 15369.0 1.0 1.0 1.0 381.0 761.0
Streptococcus oralis_subsp._dentisani_clade_058 (SP150) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 8.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Actinomyces oris (SP152) 1.0 1.00 1.0 1.00 29.0 1.0 1.0 1.0 1.0 560.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Fusobacterium periodonticum (SP154) 1.0 41.00 817.5 2002.75 2271.0 1.0 1.0 118.0 969.0 2262.0 1.0 1.0 1.0 11.5 22.0 1.0 1.0 1.0 1032.0 2063.0
Alloprevotella sp. HMT308 (SP155) 1.0 1.00 4.5 17.00 62.0 1.0 1.0 7.0 103.0 800.0 1.0 16.5 32.0 102.0 172.0 1.0 1.0 1.0 25.0 49.0
Solobacterium moorei (SP156) 1.0 2.25 34.5 260.25 398.0 1.0 24.0 66.0 485.0 968.0 215.0 239.5 264.0 317.5 371.0 1.0 1.0 1.0 81.0 161.0
Alloprevotella sp. HMT473 (SP158) 1.0 1.00 1.0 1.00 520.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 6.5 12.0
Prevotella sp. HMT317 (SP159) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 7.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Lancefieldella parvula (SP16) 12.0 36.50 76.5 1123.00 2445.0 374.0 654.0 2492.0 3118.0 4445.0 1506.0 1515.0 1524.0 5032.5 8541.0 53.0 199.5 346.0 1249.5 2153.0
Bifidobacterium dentium (SP161) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 7.0 175.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 5.0 9.0
Streptococcus downii (SP166) 1.0 1.00 1.0 667.75 1909.0 1.0 1.0 1.0 32.0 78.0 1.0 1.0 1.0 14.0 27.0 1.0 126.5 252.0 495.0 738.0
Gemella morbillorum (SP168) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 14.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sp. HMT056 (SP169) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 21.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Saccharibacteria_(TM7)_[G-3] bacterium HMT351 (SP171) 1.0 1.00 1.0 25.00 90.0 1.0 1.0 1.0 28.0 90.0 1.0 7.5 14.0 118.5 223.0 1.0 1.0 1.0 1.0 1.0
Lactobacillus crispatus (SP147) 1.0 1.00 1.0 1.00 215.0 1.0 1.0 1.0 1.0 2789.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Mogibacterium diversum (SP140) 1.0 1.00 27.0 479.00 637.0 1.0 54.0 120.0 378.0 1090.0 1.0 63.5 126.0 234.5 343.0 1.0 1.0 1.0 29.5 58.0
Leptotrichia sp. HMT212 (SP176) 1.0 1.00 1.0 6.25 1069.0 1.0 1.0 1.0 1.0 178.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Prevotella pallens (SP139) 1.0 1.00 1.0 4.75 95.0 1.0 1.0 1.0 120.0 628.0 1.0 4.5 8.0 28.5 49.0 1.0 1.0 1.0 235.0 469.0
Leptotrichia wadei (SP107) 1.0 1.00 1.0 1.00 27.0 1.0 1.0 1.0 1.0 313.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Campylobacter concisus (SP109) 1.0 27.00 103.5 156.75 1358.0 1.0 90.0 220.0 360.0 778.0 235.0 252.5 270.0 283.0 296.0 1.0 131.5 262.0 536.5 811.0
Filifactor alocis (SP11) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 153.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Saccharibacteria_(TM7)_[G-6] bacterium HMT870 (SP113) 1.0 1.00 1.0 5.50 72.0 1.0 1.0 1.0 169.0 292.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 31.0 61.0
Lactobacillus ultunensis (SP114) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 271.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Prevotella sp. HMT309 (SP119) 1.0 1.00 1.0 1.00 14.0 1.0 1.0 1.0 1.0 163.0 1.0 1.0 1.0 44.0 87.0 1.0 1.0 1.0 1.0 1.0
Leptotrichia sp. HMT417 (SP12) 1.0 1.00 1.0 1.00 31.0 1.0 1.0 8.0 292.0 1539.0 1.0 18.0 35.0 141.0 247.0 1.0 1.0 1.0 2715.5 5430.0
Actinomyces sp. HMT169 (SP120) 1.0 1.00 1.0 37.75 2310.0 1.0 1.0 1.0 1.0 1989.0 1.0 1.0 1.0 51.0 101.0 1.0 43.0 85.0 127.5 170.0
Actinomyces israelii (SP126) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 53.0 1.0 1.0 1.0 1.0 1.0 1.0 11.0 21.0 32.5 44.0
Streptococcus constellatus (SP127) 1.0 1.00 1.0 1.00 18.0 1.0 1.0 1.0 12.0 21.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Ruminococcaceae_[G-1] bacterium HMT075 (SP128) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 36.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Peptostreptococcaceae_[XI][G-1] [Eubacterium]_sulci (SP129) 1.0 1.00 1.0 1.00 49.0 1.0 1.0 1.0 54.0 350.0 1.0 1.0 1.0 4.0 7.0 1.0 1.0 1.0 13.5 26.0
Prevotella jejuni (SP13) 1.0 1.00 1.0 36.25 281.0 1.0 1.0 1.0 1.0 133.0 1.0 1.0 1.0 115.0 229.0 1.0 1.0 1.0 11.0 21.0
Campylobacter showae (SP132) 1.0 1.00 1.0 1.00 17.0 1.0 1.0 1.0 1.0 12.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Treponema socranskii (SP136) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 6.0 1.0 1.0 1.0 2.5 4.0 1.0 1.0 1.0 1.0 1.0
Streptococcus sp. HMT061 (SP173) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 4.0 1.0 1.0 1.0 85.0 169.0 1.0 1.0 1.0 1.0 1.0
Arachnia propionica (SP177) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 473.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Porphyromonas gingivalis (SP268) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 260.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus gordonii (SP222) 1.0 1.00 51.5 410.25 711.0 1.0 1.0 25.0 1742.0 8614.0 1.0 1.0 1.0 1.0 1.0 1.0 7.0 13.0 2619.0 5225.0
Veillonella parvula (SP23) 1.0 24.75 106.0 894.50 3872.0 1.0 166.0 595.0 837.0 5495.0 59.0 364.5 670.0 3206.0 5742.0 143.0 325.0 507.0 1859.5 3212.0
Neisseria perflava (SP233) 1.0 1.00 1.0 5437.75 18168.0 1.0 1.0 1.0 1160.0 5300.0 1.0 1.0 1.0 21.0 41.0 1.0 1.0 1.0 6477.5 12954.0
Ruminococcaceae_[G-2] bacterium HMT085 (SP235) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 31.0 172.0 1.0 1.0 1.0 90.5 180.0 1.0 1.0 1.0 13.5 26.0
Bifidobacterium breve (SP237) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 172.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Bifidobacterium longum (SP238) 1.0 1.00 13.0 76.00 588.0 1.0 60.0 227.0 874.0 15001.0 1.0 170.5 340.0 665.5 991.0 1.0 1.0 1.0 1.0 1.0
Veillonella dispar (SP24) 1.0 27.00 536.5 1683.50 2432.0 20.0 532.0 1408.0 3273.0 4290.0 57.0 428.5 800.0 3365.0 5930.0 1.0 35.0 69.0 1731.5 3394.0
Alloscardovia omnicolens (SP244) 1.0 1.00 1.0 19.75 392.0 1.0 1.0 11.0 220.0 701.0 1.0 456.0 911.0 918.0 925.0 1.0 1.0 1.0 1.0 1.0
Bergeyella sp. HMT322 (SP246) 1.0 4.50 96.0 374.25 1566.0 1.0 12.0 27.0 72.0 80.0 1.0 3.0 5.0 8.0 11.0 1.0 1.0 1.0 217.0 433.0
Streptococcus periodonticum (SP249) 1.0 1.00 1.0 269.50 5865.0 1.0 1.0 1.0 659.0 3454.0 1.0 1.0 1.0 236.0 471.0 1.0 1.0 1.0 1.0 1.0
Streptococcus chosunense (SP250) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 13874.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus infantis_clade_431 (SP251) 1.0 1.00 164.5 1090.00 1534.0 1.0 37.0 74.0 220.0 2935.0 1.0 155.5 310.0 323.5 337.0 1.0 1.0 1.0 2391.5 4782.0
Parascardovia denticolens (SP252) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 31.0 1.0 1.0 1.0 7.0 13.0 1.0 1.0 1.0 10.5 20.0
Cardiobacterium hominis (SP255) 1.0 1.00 1.0 1.00 4.0 1.0 1.0 1.0 1.0 11.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Gemella sanguinis (SP103) 58.0 502.25 1872.5 3188.00 7375.0 1.0 392.0 956.0 2028.0 3429.0 1.0 305.5 610.0 660.5 711.0 1.0 834.0 1667.0 1843.5 2020.0
Stomatobaculum sp. HMT097 (SP26) 1.0 1.00 1.0 1.00 388.0 1.0 1.0 1.0 293.0 433.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 7.0 13.0
Selenomonas sp. HMT137 (SP223) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 16.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Prevotella intermedia (SP221) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 40.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Streptococcus mitis (SP18) 1259.0 3029.50 8236.0 11449.00 19620.0 1.0 49.0 1369.0 4448.0 23131.0 60.0 481.0 902.0 1302.0 1702.0 1.0 113.0 225.0 268.5 312.0
Actinomyces sp. HMT171 (SP220) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1008.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Haemophilus sp. HMT036 (SP180) 1.0 1.00 1.0 1.00 122.0 1.0 1.0 1.0 1.0 104.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 204.0 407.0
Streptococcus anginosus (SP183) 1.0 1.00 1.0 1.00 11605.0 1.0 1.0 1.0 1.0 78.0 1.0 1.0 1.0 1.0 1.0 1.0 46.5 92.0 266.5 441.0
Streptococcus oralis (SP184) 1.0 1.00 19.0 125.50 423.0 1.0 12.0 76.0 1122.0 29720.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 419.0 837.0
Porphyromonas pasteri (SP19) 1.0 1.00 2.0 1843.50 4336.0 1.0 1.0 1.0 275.0 1242.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 13.5 26.0
Rothia dentocariosa (SP194) 1.0 3.50 61.5 772.00 3529.0 1.0 1.0 13.0 338.0 20912.0 1.0 1.0 1.0 12.5 24.0 1.0 117.0 233.0 300.0 367.0
Streptococcus mutans (SP196) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 38.5 76.0 1.0 1.0 1.0 11.5 22.0
Lachnoanaerobaculum umeaense (SP2) 1.0 1.00 1.0 1.00 46.0 1.0 1.0 1.0 1.0 91.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Bilophila wadsworthia (SP200) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 10.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Neisseria flavescens (SP206) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 610.0 1.0 1.0 1.0 5.0 9.0 1.0 1.0 1.0 1.0 1.0
Streptococcus australis (SP209) 1.0 1.00 1.0 707.50 20021.0 1.0 1.0 1.0 9.0 76.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 328.5 656.0
Actinomyces sp. HMT170 (SP213) 1.0 1.00 1.0 147.25 14659.0 1.0 1.0 1.0 1.0 54.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 368.0 735.0
Fusobacterium sp. HMT204 (SP214) 1.0 1.00 1.0 1.00 31.0 1.0 1.0 1.0 1.0 6.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Lachnospiraceae_[G-2] bacterium HMT096 (SP216) 1.0 1.00 1.0 1.00 1.0 1.0 1.0 1.0 1.0 519.0 1.0 1.0 1.0 204.5 408.0 1.0 1.0 1.0 34.5 68.0
Schaalia meyeri (SP218) 1.0 1.00 1.0 1.00 945.0 1.0 1.0 1.0 195.0 293.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
Catonella morbi (SP219) 1.0 1.00 1.0 13.75 26.0 1.0 1.0 7.0 48.0 184.0 1.0 1.0 1.0 6.5 12.0 1.0 1.0 1.0 30.5 60.0
Streptococcus multispecies_sppn6_2_nov_97.976% (SPPN6) 1.0 236.75 2213.5 3703.50 4600.0 1.0 1.0 437.0 1059.0 2573.0 1.0 1.0 1.0 2854.0 5707.0 1.0 6.5 12.0 825.5 1639.0
Download table as TSV