taxon lfc_(Intercept) lfc_GroupPeri-implant I-III AB Saliva se_(Intercept) se_GroupPeri-implant I-III AB Saliva W_(Intercept) W_GroupPeri-implant I-III AB Saliva p_(Intercept) p_GroupPeri-implant I-III AB Saliva q_(Intercept) q_GroupPeri-implant I-III AB Saliva diff_(Intercept) diff_GroupPeri-implant I-III AB Saliva Megasphaera micronuciformis (SP1) -0.317658788517722 0.0676343042929912 0.783779449716698 1.3575458288377 -0.405291040269736 0.0498210099845383 0.685263591645639 0.96026502392544 1 1 FALSE FALSE Haemophilus parainfluenzae (SP10) -0.800164875946401 1.51515256657903 0.933585696177308 1.61701785899866 -0.857087763043911 0.937004225492778 0.391396383494976 0.348756384376914 1 1 FALSE FALSE Actinomyces oris (SP100) 0.491675096977502 -2.36036735219268 0.683981914510933 1.18469142739117 0.71884224794023 -1.99238999930175 0.472238123444854 0.0463282837682266 1 1 FALSE FALSE Prevotella sp._HMT_309 (SP102) 0.463443480254974 -2.2756725020251 0.588331512436226 1.01902007123338 0.787725067344936 -2.23319693720135 0.430857539620131 0.0255359602222194 1 1 FALSE FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP106) 0.431725644784447 -2.18051899561352 0.935307233860777 1.61999964973357 0.461586983565136 -1.34599967103211 0.644377530671076 0.178302622674616 1 1 FALSE FALSE Lancefieldella parvula (SP109) -1.33876933429405 3.13096594162198 0.519896155180594 0.900486555432503 -2.57507065777205 3.47697133592203 0.0100219610944182 0.000507112029206958 0.992174148347402 0.0496969788622819 FALSE TRUE Selenomonas sp._HMT_136 (SP111) 0.460473201565153 -2.26676166595563 0.558411042759394 0.967196297566787 0.824613351644553 -2.34364179397524 0.409591138775608 0.0190965019425425 1 1 FALSE FALSE Lachnoanaerobaculum orale (SP112) -0.518417810245359 0.669911369475904 0.700794134135624 1.21381104596914 -0.739757633509288 0.551907458496581 0.459447070308921 0.581011758060696 1 1 FALSE FALSE Porphyromonas pasteri (SP113) -0.439995808540877 0.434645364362457 0.739181748970255 1.28030034524411 -0.595247121771918 0.339487032067922 0.55167829626209 0.734242864578848 1 1 FALSE FALSE Streptococcus australis (SP115) -0.237702234932829 -0.172235356461685 0.854630551324158 1.48026353659404 -0.278134492810414 -0.116354522153524 0.780909118513537 0.907371576573029 1 1 FALSE FALSE Stomatobaculum longum (SP116) -0.581633048826149 0.859557085218271 0.637966145085335 1.10498977679666 -0.911698925259347 0.777886911958686 0.361927229903286 0.436635684694484 1 1 FALSE FALSE Streptococcus infantis_clade_431 (SP118) -0.534351541763137 0.717712564029239 0.731773199845146 1.26746836174905 -0.730214692033289 0.566256788484116 0.465258963345733 0.57121923061121 1 1 FALSE FALSE Catonella morbi (SP119) 0.152902879989025 -1.34405070122725 0.508936532718622 0.881503932496593 0.300436046852941 -1.52472456636765 0.763844571473087 0.127327811651044 1 1 FALSE FALSE Campylobacter concisus (SP13) -0.504098567769972 0.626953642049742 0.700302793143579 1.21296001840708 -0.719829440501203 0.516879066527758 0.47163001591964 0.605240581495217 1 1 FALSE FALSE Streptococcus sp._HMT_064 (SP131) 0.285948898081295 -1.74318875550406 0.902280299547853 1.56279532148535 0.316918033370106 -1.1154299808418 0.751305798170577 0.264666207921349 1 1 FALSE FALSE Streptococcus sp._HMT_423 (SP136) 0.717560030748318 -3.03802215350513 0.964930725496738 1.67130904234465 0.743638907734982 -1.81775008483359 0.45709495816049 0.0691023388851308 1 1 FALSE FALSE Streptococcus oralis (SP137) 0.0708025060569345 -1.09774957943098 0.815822638226912 1.4130462593739 0.0867866405507144 -0.776867404126866 0.930841106850422 0.437237004117543 1 1 FALSE FALSE Streptococcus salivarius (SP14) -1.85704981790302 4.68580739244888 0.954330343475332 1.65294864210393 -1.94591928319109 2.83481729140999 0.0516644362185783 0.00458519006991754 1 0.417252296362496 FALSE FALSE Prevotella nanceiensis (SP141) -0.130126489518226 -0.494962592705495 0.74052374616438 1.28262475256795 -0.175722237392427 -0.385898207339699 0.860512164229288 0.699572058326656 1 1 FALSE FALSE Lachnoanaerobaculum gingivalis (SP151) -0.301873004927363 0.0202769535219155 0.568945319432973 0.985442199986414 -0.530583510605585 0.0205765021248278 0.595707424780796 0.983583485085496 1 1 FALSE FALSE Microbacterium hydrothermale (SP152) 0.794058976660959 -3.26751899124305 0.741546245012778 1.28439577252405 1.07081518111831 -2.54401257084632 0.284252539512376 0.0109587140615555 1 0.942449409293771 FALSE FALSE Leptotrichia sp._HMT_215 (SP153) -0.00931247854661976 -0.857404625620313 0.834613705434311 1.44559334250555 -0.0111578308455572 -0.59311605858272 0.991097523758875 0.553103484139646 1 1 FALSE FALSE Streptococcus mitis (SP161) -0.623643281111148 0.98558778207327 0.949429921284238 1.64446086189042 -0.656860782592129 0.599337937991586 0.511270436875458 0.548947553815821 1 1 FALSE FALSE Fusobacterium nucleatum_subsp._animalis (SP164) 0.531882712054858 -2.48099019742475 0.827514731870583 1.43329755961159 0.64274712167667 -1.73096659572704 0.520388199535198 0.0834577225022306 1 1 FALSE FALSE Actinomyces graevenitzii (SP17) -0.592547483842273 0.892300390266645 0.812994827442571 1.40814834742123 -0.728845330672328 0.633669308990587 0.466096279181836 0.526296658336088 1 1 FALSE FALSE Streptococcus sanguinis (SP179) 0.220609160135691 -1.54716954166725 1.02336683773504 1.77252335773819 0.215571925922431 -0.872862710052801 0.829321441132032 0.382737913728635 1 1 FALSE FALSE Streptococcus periodonticum (SP18) -0.245711361332186 -0.148207977263615 0.739912509175288 1.28156605904737 -0.332081642471564 -0.11564599125993 0.739827611505025 0.907933111659548 1 1 FALSE FALSE Alloprevotella sp._HMT_308 (SP182) -0.0651057910815171 -0.690024688015622 0.48491698244045 0.839900851039845 -0.134261726107958 -0.821554933729776 0.893195617305619 0.411330247108689 1 1 FALSE FALSE Streptococcus gordonii (SP195) 0.599211546163912 -2.68297669975191 1.03267643634553 1.78864805552963 0.580251010940483 -1.50000258097586 0.561745358410511 0.133613733975434 1 1 FALSE FALSE Prevotella histicola (SP2) -0.783580609816943 1.46539976819065 0.710898426223962 1.23131219324066 -1.1022398994172 1.19011228527991 0.270357390088363 0.23400226227623 1 1 FALSE FALSE Streptococcus downii (SP20) -0.0430923622444699 -0.756064974526764 0.797403887180404 1.38114404674938 -0.0540408228969679 -0.547419348695899 0.956902639775174 0.584090665376124 1 1 FALSE FALSE Agrobacterium tumefaciens (SP203) 0.985479704644633 -3.84178117519407 0.744269279820312 1.28911220716148 1.32409026056074 -2.98017593336841 0.185473069779447 0.00288082875053952 1 0.265036245049636 FALSE FALSE Streptococcus sp._HMT_066 (SP206) -0.586038178954888 0.87277247560449 0.852740955343078 1.47699066034903 -0.687240568525422 0.590912657090358 0.491931143431501 0.554578944891637 1 1 FALSE FALSE Leptotrichia sp._HMT_212 (SP208) 0.16124536826824 -1.3690781660649 0.70417933716011 1.21967438960149 0.228983384997532 -1.12249480495546 0.818881829920259 0.261652115168899 1 1 FALSE FALSE Granulicatella adiacens (SP21) -1.05844639387516 2.2899971203653 0.811082069301316 1.40483535313798 -1.30498063505081 1.63008221230348 0.191899441875857 0.103084122601833 1 1 FALSE FALSE Ruminococcaceae_[G-1] bacterium_HMT_075 (SP211) 0.44347135957755 -2.21575613999282 0.615028494331439 1.06526060028464 0.72105823334189 -2.08001322812537 0.470873686900406 0.0375243195744343 1 1 FALSE FALSE Fusobacterium sp._HMT_204 (SP214) 0.52687974784858 -2.46598130480591 0.737428197430098 1.27726310488286 0.714482779048496 -1.93067606460931 0.474928701118663 0.0535231247034533 1 1 FALSE FALSE Capnocytophaga granulosa (SP22) 0.532193908525996 -2.48192378683816 0.678275406702867 1.17480746593381 0.784628048233414 -2.11262173488604 0.432671680074462 0.0346331568887771 1 1 FALSE FALSE Actinomyces sp._HMT_170 (SP225) 0.214721499407791 -1.52950655948355 0.983200770842975 1.70295368914092 0.21839028789989 -0.898149238723649 0.827125032055829 0.369105991423384 1 1 FALSE FALSE Micrococcus flavus (SP232) 0.748111928005536 -3.12967784527678 0.689108005885249 1.19357007809572 1.08562362012394 -2.62211486590717 0.27764554530705 0.00873859729674341 1 0.76899656211342 FALSE FALSE Cardiobacterium hominis (SP237) 0.684242988615882 -2.93807102710782 0.686004950117395 1.18819542784708 0.997431561534343 -2.47271699440165 0.318555077944896 0.013409028159284 1 1 FALSE FALSE Schaalia odontolyticus (SP24) -1.43192736053991 3.41044002035956 0.748156646757443 1.29584532420425 -1.91394057213282 2.63182646621334 0.0556277495409506 0.00849272291691031 1 0.755852339605018 FALSE FALSE Novosphingobium silvae (SP247) 0.870367258316421 -3.49644383620943 0.725915853464429 1.25732314022011 1.19899194123203 -2.780863347188 0.230531079177407 0.00542145528116998 1 0.487930975305299 FALSE FALSE Neisseria flava (SP25) 0.459123473427367 -2.26271248154227 0.769775737187537 1.3332906872426 0.596437964003421 -1.69708864180385 0.550882685133448 0.0896799032566305 1 1 FALSE FALSE Rothia dentocariosa (SP258) 0.133958786160127 -1.28721841974055 0.963963123047447 1.66963310574095 0.138966712478205 -0.770958850369293 0.889476453364887 0.440731322709363 1 1 FALSE FALSE Schaalia sp._HMT_180 (SP26) 0.103972770188453 -1.19726037182553 0.85879454507996 1.48747578534149 0.121068270384476 -0.804894024913937 0.903636960838068 0.420880836695509 1 1 FALSE FALSE Streptococcus parasanguinis_clade_411 (SP28) -1.72319598548986 4.2842458952094 0.821203265941293 1.42236577995182 -2.09837936228209 3.01205636102588 0.0358716468827807 0.00259484414832019 1 0.241320505793778 FALSE FALSE Campylobacter gracilis (SP282) 0.819077741206358 -3.34257528487925 0.819975161276443 1.42023864027528 0.998905552128326 -2.35353073074491 0.317840446388211 0.0185960706833777 1 1 FALSE FALSE Prevotella pallens (SP29) 0.338738130372141 -1.9015564523766 0.685077909288408 1.18658974603059 0.494451982438011 -1.60253909047987 0.620987009988094 0.109036450551094 1 1 FALSE FALSE Rothia aeria (SP296) 0.570975661607523 -2.59826904608274 0.855172007042348 1.481201365408 0.667673470255731 -1.75416328040384 0.504342048230266 0.0794025331198335 1 1 FALSE FALSE Neisseria mucosa (SP299) 0.680565961547328 -2.92703994590216 0.84864815241945 1.46990171773994 0.801941251633049 -1.99131677347969 0.422586942373035 0.0464460725472729 1 1 FALSE FALSE Streptococcus sp._HMT_074 (SP302) -0.755071841125866 1.37987346211742 0.761168061831072 1.31838175619015 -0.991990966238729 1.04664180586432 0.321201932221151 0.295264812870754 1 1 FALSE FALSE Cutibacterium acnes (SP314) -0.00411748013147748 -0.872989620865742 0.595561814710045 1.03154332212572 -0.00691360666479618 -0.846294675309182 0.994483783926707 0.397388377541519 1 1 FALSE FALSE Bifidobacterium longum (SP328) -0.231039949160377 -0.192222213779043 0.621130117458875 1.07582892155 -0.371967068841536 -0.178673588270986 0.709917368195992 0.858194008938455 1 1 FALSE FALSE Lautropia mirabilis (SP332) 0.741707954362252 -3.11046592434693 0.825536782623926 1.42987165102158 0.898455368644837 -2.17534624322724 0.368942829235616 0.0296041796293434 1 1 FALSE FALSE Bifidobacterium scardovii (SP353) 0.288874863900569 -1.75196665296188 0.779698777533184 1.35047789728682 0.37049546853788 -1.29729383685707 0.711013352308707 0.194530104169269 1 1 FALSE FALSE Gemella haemolysans (SP37) -0.786293084260688 1.47353719152189 0.953793143338422 1.65201818417297 -0.824385339475751 0.891961847417296 0.409720642295411 0.372413382481451 1 1 FALSE FALSE Bergeyella sp._HMT_322 (SP40) -0.17066684951943 -0.373341512701884 0.812985762574128 1.40813264660852 -0.209926000400122 -0.26513234644554 0.833725428969414 0.79090750985913 1 1 FALSE FALSE Campylobacter showae (SP41) 0.66186959014008 -2.87095083168041 0.674141325204068 1.16764702673526 0.981796494881436 -2.45874889067083 0.326200115321264 0.0139422098107041 1 1 FALSE FALSE Streptococcus intermedius (SP416) 0.754136298407806 -3.14775095648359 0.864779777025731 1.49784251116665 0.872055890346482 -2.101523313043 0.38317788800249 0.0355950537107569 1 1 FALSE FALSE Schaalia lingnae_[Not_Validly_Published] (SP43) -1.17036954431107 2.62576657167304 0.746914439178405 1.29369375756381 -1.56693924085664 2.02966626090682 0.117128894275577 0.0423904746244418 1 1 FALSE FALSE Kingella oralis (SP439) 0.509296365295459 -2.41323115714655 0.699994274106603 1.21242564775993 0.727572187566062 -1.99041579300571 0.466875511031244 0.0465451516010599 1 1 FALSE FALSE Prevotella salivae (SP46) -0.0814194060472258 -0.641083843118496 0.808158780589195 1.39977206856339 -0.100746793826662 -0.45799159557202 0.919751464214714 0.646958479355059 1 1 FALSE FALSE Haemophilus parahaemolyticus (SP47) 0.23880483048138 -1.60175655270431 0.971400884267181 1.68251568606809 0.245835508644336 -0.952000962586858 0.805809568454894 0.341096493702687 1 1 FALSE FALSE Capnocytophaga gingivalis (SP48) 0.389157852297799 -2.05281561815357 0.966542178347608 1.67410016055636 0.402628939549332 -1.22622031018225 0.687221216871455 0.220115780253478 1 1 FALSE FALSE Gemella sanguinis (SP49) -1.38186664692834 3.26025787952484 0.722091923029756 1.25069989842265 -1.91369907743919 2.60674673727613 0.0556586170144902 0.00914069412898282 1 0.795240389221505 FALSE FALSE Veillonella atypica (SP5) -1.50649601982052 3.6341459982014 0.644419145398798 1.11616670120083 -2.3377580113456 3.25591687540184 0.0193998049192881 0.00113026836734582 1 0.109636031632544 FALSE FALSE Rothia mucilaginosa (SP50) -2.0592616768976 5.29244296943263 0.938592094226808 1.62568919478331 -2.19399000861389 3.25550725588606 0.0282361278473256 0.00113190004203783 1 0.109636031632544 FALSE FALSE Schaalia odontolytica (SP51) 0.317305636811662 -1.83725897169516 0.965169395363417 1.67172243067997 0.328756421759712 -1.0990215468652 0.742339804110849 0.271758667619879 1 1 FALSE FALSE Mogibacterium diversum (SP52) -0.438198113346547 0.429252278779467 0.640712287602355 1.10974623516096 -0.683923380003141 0.386802194212632 0.494023549590825 0.698902652683599 1 1 FALSE FALSE Moraxella osloensis (SP53) 1.62837816383847 -5.77047655277557 0.910639065554302 1.5772731288971 1.7881707752646 -3.65851446211511 0.0737484597592647 0.000253681428077298 1 0.0251144613796525 FALSE TRUE Actinomyces sp._HMT_169 (SP60) 0.784226088138184 -3.23802032567472 0.99286256532804 1.71968840808134 0.78986368861543 -1.88291106136337 0.429607379492429 0.0597124219367635 1 1 FALSE FALSE Fusobacterium periodonticum (SP64) -0.959520298380077 1.99321883388006 0.729703463504947 1.26388347324955 -1.31494551741781 1.57705902171133 0.188528213678615 0.11478194501093 1 1 FALSE FALSE Leptotrichia wadei (SP68) 0.608362515740573 -2.71042960848189 0.861186941496232 1.49161953748632 0.7064232937434 -1.817105193627 0.479924939197641 0.0692010076771303 1 1 FALSE FALSE Solobacterium moorei (SP69) -0.470015827657758 0.5247054217131 0.596176159856167 1.03260739913219 -0.788384137619917 0.50813641482142 0.43047204633283 0.61135767918013 1 1 FALSE FALSE Actinomyces naeslundii (SP71) 0.641794795392898 -2.81072644743887 0.710428254197771 1.230497831403 0.903391428480875 -2.28421893619602 0.366318187565717 0.0223586672244111 1 1 FALSE FALSE Fusobacterium nucleatum (SP72) 0.718746757161288 -3.04158233274404 0.950485868230553 1.64628981565153 0.756188788476491 -1.84753759868234 0.449536013778037 0.0646692641185834 1 1 FALSE FALSE Capnocytophaga sputigena (SP78) 0.331884074931559 -1.88099428605485 0.77261966367556 1.33821651241285 0.429556857707577 -1.4055978749383 0.66751802565207 0.159843567436711 1 1 FALSE FALSE Capnocytophaga leadbetteri (SP8) 0.449193365893434 -2.23292215894047 0.757035184096363 1.31122340197216 0.593358638184848 -1.70293037447473 0.55294116355737 0.0885810989287373 1 1 FALSE FALSE Acinetobacter lwoffii (SP81) 0.740519109476595 -3.10689938968996 0.564532998817462 0.977799836501066 1.31173750875108 -3.17743905624653 0.189608716366707 0.00148581913529942 1 0.139666998718145 FALSE FALSE Veillonella rogosae (SP9) -0.249519414422511 -0.136783817992642 0.755017007884607 1.30772781823477 -0.330481845861472 -0.104596549897729 0.741035907692642 0.916695952472365 1 1 FALSE FALSE Leptotrichia hongkongensis (SP90) 0.521529346511759 -2.44993010079545 0.905819125664255 1.56892474811811 0.575754399234297 -1.56153448642715 0.564781200002973 0.118397693475949 1 1 FALSE FALSE Abiotrophia defectiva (SP91) 0.436684727575734 -2.19539624398737 0.751775904633669 1.30211406273157 0.580870875062862 -1.68602452490366 0.561327482957409 0.0917910757223898 1 1 FALSE FALSE Veillonella parvula (SP92) 0.266710646437719 -1.68547400057333 0.942480738575803 1.63242452436833 0.282987901525446 -1.03249735311685 0.777186111285383 0.301839186973347 1 1 FALSE FALSE Veillonella dispar (SP93) -0.872732902426187 1.73285664601839 0.900897427196038 1.56040011631162 -0.968737256962193 1.1105207106203 0.332676298559589 0.266774708622353 1 1 FALSE FALSE Eikenella corrodens (SP95) 0.679744236428076 -2.9245747705444 0.800295127771562 1.38615182235017 0.84936695581396 -2.10985169401277 0.39567713436168 0.0348711321860357 1 1 FALSE FALSE Neisseria perflava (SP97) -0.431785116417823 0.410013287993295 0.863968567141449 1.49643745443147 -0.499769474075243 0.273992933536315 0.617237407175714 0.784090052160749 1 1 FALSE FALSE Acinetobacter johnsonii (SP98) 1.09894322302768 -4.1821717303432 0.749538358039251 1.29823851834573 1.46616008539236 -3.2214201560375 0.142604679728558 0.00127556998564826 1 0.121179148636585 FALSE FALSE Prevotella melaninogenica (SP99) -1.25502028404147 2.87971879086424 0.699930098715346 1.21231449272168 -1.79306517371512 2.37538923122101 0.0729625035000153 0.0175304532108172 1 1 FALSE FALSE Actinomyces sp._HMT_175_nov_97.551% (SPN195) 0.489968929598998 -2.35524885005717 1.0760278139244 1.86373484407433 0.455349688231594 -1.2637252866445 0.648857684612918 0.20632864580642 1 1 FALSE FALSE Reyranella massiliensis_soli (SPP12) -0.226323406727331 -0.20637184107818 0.496483025331505 0.859933824969672 -0.455853262206122 -0.239985723419425 0.648495500417749 0.810341324303045 1 1 FALSE FALSE Veillonella denticariosi_dispar_parvula (SPP13) -1.15749858219163 2.58715368531472 0.666229391969562 1.153943156387 -1.73738744664167 2.24201137724591 0.0823188055426838 0.0249606370013296 1 1 FALSE FALSE Afipia birgiae_broomeae (SPP14) -0.216386874466478 -0.236181437860741 0.587811477420275 1.01811934416404 -0.36812291487763 -0.231978145994923 0.71278158518713 0.816554987812536 1 1 FALSE FALSE Streptococcus infantis_infantis_clade_638 (SPP21) -0.688761674973857 1.1809429636614 0.976868282217012 1.6919854971024 -0.705071182586362 0.697962816870366 0.48076593906058 0.485200448009834 1 1 FALSE FALSE Streptococcus parasanguinis_parasanguinis_clade_721 (SPP32) -1.24752859086787 2.85724371134343 0.799583265605109 1.38491884090989 -1.56022348707331 2.0631127449073 0.118707077139232 0.0391019175602248 1 1 FALSE FALSE Veillonella dispar_parvula (SPP37) 0.958925147230414 -3.76211750295142 0.997166141625741 1.72714242088321 0.961650328065712 -2.17823235505245 0.336225281484754 0.0293887423964437 1 1 FALSE FALSE Streptococcus sp._HMT_061_sp._HMT_066 (SPP4) -0.469537338358203 0.523269953814435 0.810068153306848 1.40307919912096 -0.57962695662268 0.37294398929317 0.562166210498276 0.709190131298852 1 1 FALSE FALSE Staphylococcus capitis_epidermidis (SPP7) -0.131508391625551 -0.49081688638352 0.555541135277081 0.962225471994399 -0.236721249381399 -0.510085110682226 0.812873048813196 0.609991835927664 1 1 FALSE FALSE Streptococcus multispecies_sppn5_2_nov_97.976% (SPPN5) -0.886624961181291 1.7745328222837 0.876690903036284 1.51847318659229 -1.01133131199446 1.16862967219464 0.311857884363359 0.242552868001423 1 1 FALSE FALSE