taxon lfc_(Intercept) lfc_GroupL. rhamnosus TX se_(Intercept) se_GroupL. rhamnosus TX W_(Intercept) W_GroupL. rhamnosus TX p_(Intercept) p_GroupL. rhamnosus TX q_(Intercept) q_GroupL. rhamnosus TX diff_(Intercept) diff_GroupL. rhamnosus TX Staphylococcus saprophyticus (SP1) 2.23289036046529 -4.54452901505222 0.567865279885966 0.871352093723737 3.93207762396335 -5.2154910142364 8.42148614387639e-05 1.83330947809139e-07 0.00471603224057078 1.02665330773118e-05 TRUE TRUE Lachnospiraceae_[G-14] bacterium_MOT-185 (SP11) 0.503616078316294 -1.08598045075423 1.04770126086585 1.5438706090807 0.480686715887017 -0.703414162020274 0.630739173868174 0.481797683364615 1 1 FALSE FALSE Enterococcus faecalis (SP13) -2.77281927397246 5.46689025382327 0.859971630675271 1.28045620823061 -3.22431482047283 4.26948631174013 0.00126274495253947 1.95923672214923e-05 0.0669254824845919 0.00103839546273909 FALSE TRUE Corynebacterium ammoniagenes (SP14) 2.82955771062337 -5.73786371536839 0.593049211953991 0.90664491882689 4.77120220984778 -6.32867796004705 1.83129577024117e-06 2.47270564848457e-10 0.00010987774621447 1.48362338909074e-08 TRUE TRUE Staphylococcus equorum (SP16) 3.48785020707923 -7.05444870828012 0.841982820783134 1.25524168960436 4.14242443074451 -5.6199923621909 3.43653618934772e-05 1.90965901100198e-08 0.00199319098982168 1.10760222638115e-06 TRUE TRUE Mammaliicoccus lentus (SP18) 3.56108338002783 -7.20091505417731 1.03713690337136 1.52903437711165 3.43357117893696 -4.70945268593624 0.000595685778541653 2.48382862328518e-06 0.0321670320412493 0.0001341267456574 TRUE TRUE Bradyrhizobium pachyrhizi (SP20) -0.241670559755174 0.404592825388703 0.517030395421139 0.799979168532911 -0.467420410667201 0.505754201238377 0.640199122474195 0.613029213286535 1 1 FALSE FALSE Triticum aestivum (SP22) -1.01711413507755 1.95547997603345 1.55870016187057 2.26282107809423 -0.652539956021386 0.864177903840444 0.514052905799868 0.387490168527958 1 1 FALSE FALSE Eubacteriales_[G-4] bacterium_MOT-164 (SP25) 0.509536564828373 -1.09782142377839 0.933396257407419 1.38342329801511 0.545895230224781 -0.793554239944861 0.585137957260449 0.427454981099128 1 1 FALSE FALSE Jeotgalicoccus halotolerans (SP27) 3.15269760757464 -6.38414350927093 0.763705262195969 1.14557547094562 4.12816012097302 -5.57287029199492 3.65677448041199e-05 2.50576137202992e-08 0.00208436145383484 1.42828398205706e-06 TRUE TRUE Lachnospiraceae_[G-11] bacterium_MOT-177 (SP3) 0.580745791508612 -1.24023987713887 0.854912950970753 1.2733650868408 0.679304004985742 -0.973986086123885 0.496945259343757 0.330063447803491 1 1 FALSE FALSE Actinidia eriantha (SP30) -0.201943725664775 0.325139157207906 0.987556359362526 1.45942449643801 -0.204488304642311 0.222785870732927 0.837971930452155 0.823702165185145 1 1 FALSE FALSE Limosilactobacillus reuteri (SP31) 1.1954778924952 -2.46970407911204 0.719877163566727 1.08420630358185 1.66066928220371 -2.27789127489204 0.0967798859769788 0.0227330562555212 1 0.863856137709804 FALSE FALSE Clostridium disporicum (SP32) 0.242274588416102 -0.563297470953848 1.00166358179881 1.47922737611336 0.241872214202917 -0.38080519604356 0.808879180819349 0.703347803377474 1 1 FALSE FALSE Enterococcus gallinarum (SP33) -2.11685837721137 4.1549684603011 1.14607048998068 1.68208179348331 -1.8470577470737 2.47013461319075 0.0647387713802717 0.0135062217253993 1 0.580767534192169 FALSE FALSE Cutibacterium acnes (SP34) -0.657313030443583 1.23587776676552 0.901417624089028 1.33856831497597 -0.729199222289295 0.923283296742092 0.465879806879688 0.355859590115972 1 1 FALSE FALSE Mollicutes_[G-1] bacterium_MOT-186 (SP35) 0.505043687181082 -1.08883566848381 0.956992348172608 1.41652990424844 0.527740569865026 -0.768664089065951 0.597679410789045 0.442092748518113 1 1 FALSE FALSE Corynebacterium stationis (SP36) 3.10808708687156 -6.29492246786476 0.573865278768907 0.879763186678177 5.41605704659328 -7.15524650631635 6.09276690556612e-08 8.35226967298709e-13 3.71658781239533e-06 5.09488450052212e-11 TRUE TRUE Staphylococcus ureilyticus (SP39) 0.521305048986107 -1.12135839209386 0.481394243151952 0.749739016512735 1.08290669529581 -1.49566498127527 0.278849839782709 0.134740980251768 1 1 FALSE FALSE Ligilactobacillus murinus (SP40) -5.15164515860249 10.2245420230833 0.791540897318151 1.18456333302701 -6.50837521605891 8.63148616710578 7.59679753542869e-11 6.05598879674529e-18 4.71001447196579e-09 3.75471305398208e-16 TRUE TRUE Streptococcus thermophilus (SP41) -0.0388557350259454 -0.00103682406975374 0.58722864585271 0.898490366252416 -0.0661679829489981 -0.00115396236698487 0.947244086798524 0.99907927144798 1 1 FALSE FALSE Stenotrophomonas maltophilia (SP45) 0.252233604335751 -0.583215502793146 0.794329790580069 1.18847014811146 0.317542672233852 -0.490727936010766 0.750831865745172 0.623618885204406 1 1 FALSE FALSE Lacticaseibacillus rhamnosus (SP47) -0.91720371529348 1.75565913646532 0.891980503539368 1.32533414668593 -1.02827776128965 1.32469169443452 0.303819188932275 0.185273429025341 1 1 FALSE FALSE Atopostipes sp._MOT-201 (SP48) 1.99755725169069 -4.07386279750301 0.508958218611419 0.788619170726735 3.92479613973144 -5.165817607184 8.68032159817252e-05 2.39390148061441e-07 0.00477417687899489 1.31664581433793e-05 TRUE TRUE Akkermansia muciniphila (SP59) 2.0663317962076 -4.21141188653684 1.04602996334068 1.54152340035545 1.97540402151427 -2.73198051068557 0.0482223167992191 0.00629548648901319 1 0.302183351472633 FALSE FALSE Pelomonas saccharophila (SP6) -0.808658652053226 1.53856900998481 0.652108726477477 0.989341102494756 -1.24006721459072 1.55514514266627 0.214950534217898 0.119911505749393 1 1 FALSE FALSE Ralstonia sp._HMT_406 (SP61) -0.128172566471275 0.177596838820906 0.681925816345935 1.03107889398476 -0.187956759223579 0.172243695275884 0.850910548117421 0.863245947316408 1 1 FALSE FALSE Pseudomonas helleri (SP65) -0.292753122131773 0.506757950141902 0.478940963234221 0.746270201019515 -0.611250957017442 0.679054247978274 0.54103345321725 0.497103490183544 1 1 FALSE FALSE Ligilactobacillus animalis (SP7) 5.19332208455801 -10.4653924632377 0.458213122911761 0.716888116461781 11.3338571613936 -14.5983623147359 8.91886902002038e-30 2.87672953531508e-48 5.61888748261284e-28 1.8123396072485e-46 TRUE TRUE Lactobacillus johnsonii (SP72) 1.79604529406819 -3.67083888225802 0.90539531817647 1.34414683527783 1.98371391812093 -2.7309805639644 0.0472877410956765 0.00631461955328996 1 0.302183351472633 FALSE FALSE Stenotrophomonas [Pseudomonas] hibiscicola (SP77) -0.700929700133297 1.32311110614495 0.730426687412781 1.09897620781766 -0.959616772240395 1.20394881775683 0.337248124606495 0.228609361567749 1 1 FALSE FALSE Eubacteriales_[G-2] bacterium_MOT-162 (SP78) 0.424156215477659 -0.927060725076962 0.939203956189642 1.39157108110112 0.451612466794182 -0.66619717646288 0.651548187291162 0.505285077448189 1 1 FALSE FALSE Dubosiella newyorkensis (SP81) 1.87073630269577 -3.82022089951319 1.12891023291132 1.65796316877716 1.65711696834511 -2.30416511745 0.097495829173437 0.0212133765150976 1 0.827321684088806 FALSE FALSE Bifidobacterium pseudolongum (SP92) 2.07800413399748 -4.2347565621166 1.20537044150286 1.76545159506612 1.72395477974938 -2.3986817729534 0.0847160069211533 0.0164542074788384 1 0.691076714111211 FALSE FALSE Fusobacterium varium_nov_96.696% (SPN102) 0.13855025418692 -0.355848802495485 0.536097213584589 0.826777883382071 0.258442406854739 -0.430404356052471 0.796065491970858 0.666901527177575 1 1 FALSE FALSE Duncaniella freteri_nov_93.293% (SPN107) 2.06792910840539 -4.21460651093242 1.12388839584126 1.6509056290892 1.83997727537482 -2.55290577285002 0.0657715736726817 0.0106828392661658 1 0.471239739070671 FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.867% (SPN118) 2.31915818406706 -4.71706466225576 1.15868757060998 1.69981706233621 2.00153884696128 -2.77504254238551 0.0453343517367649 0.00551944873332235 1 0.270452987932795 FALSE FALSE Enterococcus faecalis_nov_95.825% (SPN127) -2.89802510008781 5.71730190605399 0.633089282350942 0.962715723338455 -4.57759305184596 5.93872289342884 4.70356582962827e-06 2.87250917344315e-09 0.000277510383948068 1.69478041233146e-07 TRUE TRUE Fusicatenibacter saccharivorans_nov_90.526% (SPN15) 0.207641508462773 -0.49403131104719 0.951785451328551 1.40922366351015 0.218159994117305 -0.350569837733662 0.827304454390092 0.725911088097501 1 1 FALSE FALSE Duncaniella freteri_nov_89.775% (SPN150) 1.65126064764641 -3.38126958941447 1.01080781928728 1.492064938202 1.63360494066095 -2.26616784755297 0.102341829747233 0.0234411084229767 1 0.863856137709804 FALSE FALSE Alistipes senegalensis_nov_93.443% (SPN173) 1.03288780829823 -2.14452391071811 1.01092485702662 1.4922292542601 1.02172560217404 -1.43712764281748 0.306910790135494 0.150681727994736 1 1 FALSE FALSE Peptococcus sp._HMT_168_nov_84.866% (SPN179) 0.62466291432037 -1.32807412276238 1.05013529156785 1.5472890807395 0.59484041659789 -0.858323204948651 0.551950148488686 0.390714019464429 1 1 FALSE FALSE Duncaniella freteri_nov_89.718% (SPN183) 1.17619444441154 -2.43113718294473 1.02198412339986 1.5077568122636 1.15089306915911 -1.61241996266948 0.249776229484316 0.106870583724894 1 1 FALSE FALSE Oscillospiraceae_[G-6] bacterium_MOT-153_nov_91.631% (SPN189) 1.29973679546943 -2.67822188506051 0.804908678780791 1.20329053208849 1.61476305291945 -2.22574832398295 0.106362017117991 0.0260310439373688 1 0.911086537807906 FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.000% (SPN194) 1.08001039501445 -2.23876908415055 0.978150406144746 1.44622248107498 1.10413530294505 -1.54801153587826 0.269534449279875 0.121619519126649 1 1 FALSE FALSE Lachnospiraceae_[G-14] bacterium_MOT-185_nov_92.719% (SPN210) -1.27802736875644 2.47730644339123 1.0873951911 1.59962783443246 -1.17531085222438 1.54867675472162 0.239870374380692 0.121459444527501 1 1 FALSE FALSE Actinidia eriantha_nov_97.011% (SPN220) -0.711718596334416 1.34468889854719 0.498903496031942 0.774454280684066 -1.42656566248806 1.73630507582635 0.153705127620809 0.0825099062192803 1 1 FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.423% (SPN28) 0.523565014357926 -1.1258783228375 0.941596519699322 1.39492781579034 0.556039666039882 -0.807122999550763 0.578183738743588 0.419595622505167 1 1 FALSE FALSE Duncaniella freteri_nov_88.934% (SPN33) 1.72825396984135 -3.53525623380434 1.05354541091626 1.55207854399838 1.64041715898918 -2.27775601143032 0.100918460003099 0.0227411185067058 1 0.863856137709804 FALSE FALSE Yaniella halotolerans_nov_97.040% (SPN36) 1.35536281716776 -2.78947392845716 0.723805280680454 1.08970576390043 1.87255171155089 -2.55984140018925 0.0611303147530845 0.0104719942015705 1 0.471239739070671 FALSE FALSE Oscillospiraceae_[G-1] bacterium_MOT-147_nov_96.674% (SPN38) 0.420948220997847 -0.920644736117339 0.897909254050666 1.33364819115108 0.468809313523451 -0.690320537474525 0.63920594216786 0.489992635383094 1 1 FALSE FALSE Lachnoclostridium [Clostridium] aminophilum_nov_89.792% (SPN43) -0.837337359272089 1.59592642442253 1.12743698728212 1.65589268412138 -0.742691049448919 0.963786143707337 0.45766874991972 0.335153155005717 1 1 FALSE FALSE Duncaniella freteri_nov_93.699% (SPN50) 2.53761739539485 -5.15398308491134 0.905819966869209 1.34474239787242 2.80145888610253 -3.83269174309199 0.00508721229139414 0.000126748737352272 0.259447826861101 0.00659093434231813 FALSE TRUE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_92.917% (SPN51) 0.17819989799946 -0.435148090120565 0.909257923386272 1.34956417074182 0.195983882478368 -0.322436012717628 0.844622781282162 0.747122405580178 1 1 FALSE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_85.887% (SPN61) 1.21686298086288 -2.51247425584741 0.694019608075239 1.04800794508179 1.75335533276599 -2.39738092410294 0.0795410330889832 0.0165127471170059 1 0.691076714111211 FALSE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_88.105% (SPN64) 1.83764814538113 -3.7540445848839 1.06750618579688 1.57168775729865 1.72144027812761 -2.38854350519101 0.0851709606314711 0.0169153054776137 1 0.691076714111211 FALSE FALSE Parafannyhessea umbonata_nov_92.161% (SPN65) 0.162634567028281 -0.404017428178207 0.886718167096222 1.31795506583628 0.183411790874736 -0.306548712206546 0.854474925013881 0.759186896793379 1 1 FALSE FALSE Oribacterium parvum_nov_89.770% (SPN8) 0.207864972242915 -0.494478238607474 0.952107760843211 1.40967591235028 0.218320846433206 -0.350774411533397 0.82717913308786 0.725757595557637 1 1 FALSE FALSE Turicibacter sanguinis_nov_95.923% (SPN81) -2.06279207483451 4.04683585554737 1.00691507791425 1.4865997966358 -2.04862566871818 2.72220934289473 0.0404987326648161 0.00648470493583575 1 0.302183351472633 FALSE FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.198% (SPN82) 0.147102471530736 -0.372953237183117 0.86418182960813 1.28635823998886 0.1702216668886 -0.289929527863364 0.864835812664906 0.771870151391293 1 1 FALSE FALSE Staphylococcus saprophyticus_xylosus (SPP1) -1.30513352348126 2.53151875284088 0.440625534860647 0.691822220596436 -2.96200156419447 3.65920416759438 0.00305646231185276 0.000252999718931972 0.158936040216344 0.0129029856655306 FALSE TRUE Sphingomonas aquatilis_melonis (SPP3) -0.999986565918087 1.92122483771453 0.426839880821262 0.672052263850646 -2.34276741900045 2.85874319759972 0.0191413111746966 0.00425322946675347 0.957065558734831 0.212661473337674 FALSE FALSE Faecalicatena multispecies_sppn3_2_nov_92.067% (SPPN3) 0.473452249921736 -1.02565279396512 0.874631163072988 1.30100768105856 0.54131646562681 -0.788352604598456 0.588289473227043 0.43049048558385 1 1 FALSE FALSE