taxon lfc_GroupAntibiotic TX lfc_GroupL. rhamnosus TX lfc_GroupL. rhamnosus TX_GroupAntibiotic TX se_GroupAntibiotic TX se_GroupL. rhamnosus TX se_GroupL. rhamnosus TX_GroupAntibiotic TX W_GroupAntibiotic TX W_GroupL. rhamnosus TX W_GroupL. rhamnosus TX_GroupAntibiotic TX p_GroupAntibiotic TX p_GroupL. rhamnosus TX p_GroupL. rhamnosus TX_GroupAntibiotic TX q_GroupAntibiotic TX q_GroupL. rhamnosus TX q_GroupL. rhamnosus TX_GroupAntibiotic TX diff_GroupAntibiotic TX diff_GroupL. rhamnosus TX diff_GroupL. rhamnosus TX_GroupAntibiotic TX Staphylococcus saprophyticus (SP10) -2.83959219918096 -3.55708152363508 -0.717489324454127 0.758261224918533 0.661724677972417 0.970211994042437 -3.74487327831651 -5.37547055753504 -0.739518093839133 0.000180484850613576 7.63829333282945e-08 0.459592456792731 0.00202400868188082 9.32962971367026e-07 1 TRUE TRUE FALSE Triticum aestivum (SP12) 7.7006963714292 2.94292746745059 -4.75776890397862 2.71719503464926 2.63680314156666 2.9174170139854 2.83406096111287 1.11609676924992 -1.63081550603531 1 1 1 1 1 1 FALSE FALSE FALSE Corynebacterium stationis (SP14) -4.58998565199349 -5.30747497644762 -0.717489324454126 0.767181654618499 0.670595320458956 0.979574033567398 -5.98291894020326 -7.91457204445622 -0.732450330314682 2.19173857992131e-09 2.48105019773903e-15 0.463893748651603 2.45787826462604e-08 3.03042559866696e-14 1 TRUE TRUE FALSE Stenotrophomonas maltophilia (SP17) 3.83208215537598 0.404231988623995 -3.42785016675199 2.16318981779597 2.08009427322382 2.36758489257013 1.77149602122315 0.194333494316822 -1.4478256629822 1 1 1 1 1 1 FALSE FALSE FALSE Cutibacterium acnes (SP18) 5.04224532684806 2.22332525818266 -2.8189200686654 2.43233588940378 2.35068702029134 2.63454632638791 2.07300535621502 0.945819345149193 -1.06998310883008 1 1 1 1 1 1 FALSE FALSE FALSE Ligilactobacillus murinus (SP2) 0.228295585500984 11.2119895145005 10.9836939289995 1.17014210593927 1.07783663684548 1.38508876645174 0.195100735493774 10.4023087833744 7.92995668944528 0.845314086800879 2.41997471653397e-25 2.19222327022137e-15 1 2.95582626090935e-24 2.45842181017683e-14 FALSE TRUE TRUE Lachnospiraceae_[G-11] bacterium_MOT-177 (SP23) 0.464696938732399 -0.252792385721729 -0.717489324454128 1.23543440902673 1.14399337800244 1.44972627943405 0.376140518134415 -0.220973644238341 -0.494913649998968 1 1 1 1 1 1 FALSE FALSE FALSE Ligilactobacillus animalis (SP24) -8.7604556473664 -9.47794497182053 -0.717489324454124 1.14544853455248 1.05280781193019 1.36061933250287 -7.64805696904491 -9.00254050589147 -0.527325540152582 2.04038822682436e-14 2.20553781805163e-19 0.597967541200163 2.28814965436732e-13 2.69390690633449e-18 1 TRUE TRUE FALSE Mammaliicoccus lentus (SP25) -6.82886004237613 -6.21346756276017 0.615392479615957 1.42790354922946 1.33878104321693 1.64000703229104 -4.78243789369469 -4.64113799208715 0.375237707826333 1.73181903172803e-06 3.46495627794207e-06 0.707483688803212 2.11529324589638e-05 3.88570096883504e-05 1 TRUE TRUE FALSE Lachnospiraceae_[G-14] bacterium_MOT-185 (SP26) 0.618956365117036 -0.0985329593370922 -0.717489324454128 1.4392295880213 1.35023225632882 1.65120001704879 0.430060895265499 -0.0729748225723741 -0.434525991428045 1 1 1 1 1 1 FALSE FALSE FALSE Corynebacterium ammoniagenes (SP27) -4.03292689949712 -4.75041622395124 -0.717489324454127 0.794719071672287 0.698087102055623 1.00824431594428 -5.07465725090859 -6.80490473174898 -0.711622483864096 3.88195088558079e-07 1.01116128044739e-11 0.476698580296261 4.35333063597274e-06 1.23506127826074e-10 1 TRUE TRUE FALSE Streptococcus thermophilus (SP28) 3.43935381965409 0.986410667347386 -2.4529431523067 1.85081333211639 1.76560958769126 2.05817835131578 1.85829319465795 0.558679945002582 -1.19180300907283 1 1 1 1 1 1 FALSE FALSE FALSE Actinidia eriantha (SP39) 4.27878980096865 1.31258664862505 -2.96620315234361 2.1977238287476 2.11483067758432 2.40182018869555 1.94691878251462 0.620658033069747 -1.23498135551712 1 1 1 1 1 1 FALSE FALSE FALSE Enterococcus gallinarum (SP40) 0.867892135136118 5.14241595171824 4.27452381658212 1.54537308760599 1.45749000722981 1.75610140582783 0.561606865097289 3.52826841090472 2.4340985107105 0.574383902000737 0.000418287781639167 0.0149289314609833 1 0.00510908647573554 0.167417302812456 FALSE TRUE FALSE Mollicutes_[G-1] bacterium_MOT-186 (SP42) 0.61610114738746 -0.101388177066668 -0.717489324454128 1.34252301207681 1.25241657893656 1.55562259573193 0.458912913853435 -0.0809540361983697 -0.461223259692076 1 1 1 1 1 1 FALSE FALSE FALSE Atopostipes sp._MOT-201 (SP45) -2.36892598163175 -3.08641530608588 -0.717489324454127 0.647909730874836 0.554874990817368 0.848966597237648 -3.65625930395137 -5.56236153577472 -0.845132572693297 0.000255922484232294 2.6614818784201e-08 0.398036823785619 0.00286998785889072 3.2508100086417e-07 1 TRUE TRUE FALSE Enterococcus faecalis (SP47) 1.69799968328103 6.45433774524041 4.75633806195938 2.02660116083561 1.94264918679828 2.23223445049666 0.837855872233345 3.32244122567386 2.13075201885766 0.402111654755698 0.000892334679990974 0.033109577100543 1 0.0108992307341755 0.371300257484661 FALSE TRUE FALSE Pelomonas saccharophila (SP49) 4.10622030809478 2.52601650140195 -1.58020380669283 1.83469595174377 1.74936793317014 2.04222762733873 2.23809307705293 1.44395953161459 -0.773764777999807 1 1 1 1 1 1 FALSE FALSE FALSE Limosilactobacillus reuteri (SP51) -0.764767263240774 -1.4822565876949 -0.717489324454128 1.09772712859125 1.00442913430755 1.31328007885755 -0.696682484491593 -1.47572042373778 -0.546333821707159 1 1 1 1 1 1 FALSE FALSE FALSE Lactobacillus johnsonii (SP56) -1.96590206638675 -2.68339139084088 -0.717489324454127 1.28813179498341 1.19736122420539 1.50184957746423 -1.5261653147938 -2.24108759879181 -0.477737141735297 1 1 1 1 1 1 FALSE FALSE FALSE Staphylococcus equorum (SP65) -6.39680028497484 -6.06700121686297 0.329799068111864 1.22202946014 1.13041384076956 1.43646179157903 -5.23457125513323 -5.36706204228062 0.229591256826491 1.65368268440024e-07 8.00295337093844e-08 0.818409401451259 1.85448701036312e-06 9.77503590307481e-07 1 TRUE TRUE FALSE Pseudomonas helleri (SP68) 3.77497816275153 1.49420544155904 -2.28077272119249 1.61332684820205 1.52610381605571 1.82327348802568 2.33987190317852 0.97909816215576 -1.25092189195501 1 1 1 1 1 1 FALSE FALSE FALSE Jeotgalicoccus halotolerans (SP7) -4.28715394250629 -5.39669601785378 -1.10954207534749 2.04931667812211 1.96551366642335 2.25473764222452 -2.09199192505222 -2.74569244164767 -0.492093649642013 1 1 1 1 1 1 FALSE FALSE FALSE Stenotrophomonas [Pseudomonas] hibiscicola (SP70) 3.92637166022637 2.31055859756209 -1.61581306266428 1.94037850497761 1.85583535223982 2.14684149562492 2.02350811975815 1.24502348485465 -0.752646651351376 1 1 1 1 1 1 FALSE FALSE FALSE Dubosiella newyorkensis (SP73) -2.11528408364192 -2.83277340809605 -0.717489324454127 1.52677433300177 1.43870352001746 1.73771892898043 -1.3854595521547 -1.96897649076557 -0.412891470817491 1 1 1 1 1 1 FALSE FALSE FALSE Eubacteriales_[G-2] bacterium_MOT-162 (SP74) 0.777876090794307 0.0603867663401783 -0.717489324454128 1.32371559284009 1.23338278548992 1.53703109061491 0.587645937693714 0.04896027985034 -0.466802089323443 1 1 1 1 1 1 FALSE FALSE FALSE Ralstonia sp._HMT_406 (SP76) 6.98947486159747 1.16504433023805 -5.82443053135943 2.33436269326171 2.25222027781896 2.53733122983937 2.99416833629712 0.517287026367719 -2.29549475561697 1 1 1 1 1 1 FALSE FALSE FALSE Eubacteriales_[G-4] bacterium_MOT-164 (SP8) 0.607115392092878 -0.11037393236125 -0.717489324454128 1.31758755225827 1.22718023510159 1.53097296347693 0.46077802651696 -0.0899410935771086 -0.468649245656609 1 1 1 1 1 1 FALSE FALSE FALSE Bradyrhizobium pachyrhizi (SP80) 3.21620753900548 1.39204031680584 -1.82416722219963 1.28528523893995 1.19447911949669 1.49903477251206 2.50232978763381 1.16539527069539 -1.21689453483639 1 1 1 1 1 1 FALSE FALSE FALSE Akkermansia muciniphila (SP83) -2.50647507066557 -3.2239643951197 -0.717489324454127 1.43743676591716 1.34841970256527 1.64942825935329 -1.74371153576714 -2.39092056352065 -0.434992743931429 1 1 1 1 1 1 FALSE FALSE FALSE Staphylococcus ureilyticus (SP9) -2.49208908236015 -0.133910900676718 2.35817818168343 2.26928652060814 2.18679615081034 2.47278163043022 -1.09818176758583 -0.0612361150476216 0.953654035869372 1 1 1 1 1 1 FALSE FALSE FALSE Bifidobacterium pseudolongum (SP93) -2.52981974624533 -3.24730907069946 -0.717489324454127 1.60988057026528 1.52262501702187 1.81986648097291 -1.57143318142442 -2.13270439825751 -0.394253826835997 1 1 1 1 1 1 FALSE FALSE FALSE Fusobacterium varium_nov_96.696% (SPN102) 3.17165557149877 0.631598688921655 -2.54005688257712 1.89627645503633 1.81141423735659 2.10317848753199 1.67257024316004 0.348677114210692 -1.20772292871718 1 1 1 1 1 1 FALSE FALSE FALSE Duncaniella freteri_nov_93.293% (SPN107) -2.50966969506115 -3.22715901951528 -0.717489324454127 1.52133771307584 1.43321143369799 1.73234568201059 -1.64964667180117 -2.2516977911546 -0.414172143530497 1 1 1 1 1 1 FALSE FALSE FALSE Enterococcus faecalis_nov_95.825% (SPN117) 1.3287314745138 6.70474939747113 5.37601792295733 1.01270505468829 0.918229090997593 1.22869481447844 1.31206165937701 7.30182637775816 4.3753891199088 0.189499331046788 2.8388745671476e-13 1.21216046973371e-05 1 3.467482507016e-12 0.000135935138391566 FALSE TRUE TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.867% (SPN118) -3.01212784638449 -3.72961717083862 -0.717489324454127 1.5590681258603 1.47132130464822 1.76963776164218 -1.93200527701276 -2.53487607299368 -0.405444176207178 1 1 1 1 1 1 FALSE FALSE FALSE Duncaniella freteri_nov_89.775% (SPN149) -1.6763327735432 -2.39382209799733 -0.717489324454127 1.39974522995269 1.31030612663465 1.61217904260715 -1.19759848983365 -1.82691819059531 -0.445043202703983 1 1 1 1 1 1 FALSE FALSE FALSE Alistipes senegalensis_nov_93.443% (SPN173) -0.439587094846841 -1.15707641930097 -0.717489324454128 1.39987017386875 1.31043249244 1.61230252317799 -0.314019902025613 -0.882972931437705 -0.445009118412774 1 1 1 1 1 1 FALSE FALSE FALSE Peptococcus sp._HMT_168_nov_84.866% (SPN178) 0.376862693108884 -0.340626631345244 -0.717489324454128 1.44184128558288 1.3528726426733 1.65378102792449 0.261375989768897 -0.251780264158613 -0.433847838582706 1 1 1 1 1 1 FALSE FALSE FALSE Duncaniella freteri_nov_89.718% (SPN181) -0.726200367073458 -1.44368969152759 -0.717489324454128 1.41168570847917 1.32238180083762 1.62397956168361 -0.514420711856469 -1.09173439214992 -0.441809331461225 1 1 1 1 1 1 FALSE FALSE FALSE Oscillospiraceae_[G-6] bacterium_MOT-153_nov_91.631% (SPN188) -0.973285069189243 -1.69077439364337 -0.717489324454128 1.1838263310328 1.09170483837247 1.39864251203978 -0.82215190157168 -1.54874681710122 -0.512989787081289 1 1 1 1 1 1 FALSE FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.000% (SPN193) -0.533832268279284 -1.25132159273341 -0.717489324454128 1.36496443250639 1.27512355610409 1.57780419576309 -0.391096101529214 -0.981333602334661 -0.454739140877441 1 1 1 1 1 1 FALSE FALSE FALSE Lachnospiraceae_[G-14] bacterium_MOT-185_nov_92.719% (SPN208) 0.702546356340208 3.46475393480837 2.76220757846816 1.48191842136738 1.39338185125654 1.69338753486849 0.47407896832267 2.48657891710293 1.63117273606404 1 1 1 1 1 1 FALSE FALSE FALSE Actinidia eriantha_nov_97.011% (SPN219) 4.32531095114877 2.33213638996433 -1.99317456118445 1.93794549200855 1.8533850411784 2.14443244442461 2.23190537039608 1.25831186620646 -0.929464841089572 1 1 1 1 1 1 FALSE FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.423% (SPN29) 0.579058493033772 -0.138430831420356 -0.717489324454128 1.3262419205891 1.23593972328308 1.53952852937252 0.436616038178434 -0.11200451673536 -0.466044838250942 1 1 1 1 1 1 FALSE FALSE FALSE Duncaniella freteri_nov_88.934% (SPN33) -1.83031941793307 -2.5478087423872 -0.717489324454128 1.44550167069494 1.35657312579349 1.65739840354321 -1.2662174351228 -1.87812119667116 -0.432900938555431 1 1 1 1 1 1 FALSE FALSE FALSE Yaniella halotolerans_nov_97.040% (SPN35) -1.0845371125859 -1.80202643704002 -0.717489324454128 1.10165087543571 1.00840726712468 1.31717537918845 -0.984465348113991 -1.78700262858896 -0.54471814140361 1 1 1 1 1 1 FALSE FALSE FALSE Oscillospiraceae_[G-1] bacterium_MOT-147_nov_96.674% (SPN40) 0.78429207975393 0.0668027552998014 -0.717489324454128 1.28028296786469 1.18941419059264 1.49408812025108 0.612592762256306 0.0561644175999918 -0.480218880485813 1 1 1 1 1 1 FALSE FALSE FALSE Lachnoclostridium [Clostridium] aminophilum_nov_89.792% (SPN43) 1.49872940492438 2.58337391583967 1.08464451091529 1.5251791089462 1.43709204872631 1.73614229322239 0.982657968584361 1.79763983673092 0.624744017324828 1 1 1 1 1 1 FALSE FALSE FALSE Duncaniella freteri_nov_93.699% (SPN51) -3.44904626904007 -4.1665355934942 -0.717489324454127 1.28857736151134 1.19781234806601 1.50229016758821 -2.6766311220886 -3.47845436743202 -0.477597031474945 0.0074366460452907 0.000504314294898472 0.632937044126381 0.0833966735079028 0.00615983888768848 1 FALSE TRUE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_88.105% (SPN55) -2.04910776901263 -2.76659709346676 -0.717489324454127 1.46050319034271 1.37173764093788 1.6722236766364 -1.40301492154345 -2.01685585559582 -0.429063010217224 1 1 1 1 1 1 FALSE FALSE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_85.887% (SPN59) -0.807537439976137 -1.52502676443026 -0.717489324454127 1.0720476329388 0.978392921442149 1.28777116297077 -0.75326638030293 -1.55870584405126 -0.557155917980758 1 1 1 1 1 1 FALSE FALSE FALSE Turicibacter sanguinis_nov_95.923% (SPN82) -1.30634942417846 5.03428334696451 6.34063277114297 1.39559070034784 1.30610423051169 1.60807315465954 -0.936054836029554 3.85442695104988 3.94300020043889 0.34924495496927 0.000116001011123031 8.04685881154077e-05 1 0.00130086848187971 0.000982866326266766 FALSE TRUE TRUE Staphylococcus saprophyticus_xylosus (SPP1) -0.00966321782664547 3.51896624425802 3.52862946208466 2.17781246367757 2.09480327678304 2.38208036303953 -0.0044371211882623 1.67985523187745 1.48132259382809 1 1 1 1 1 1 FALSE FALSE FALSE Sphingomonas aquatilis_melonis (SPP2) 8.87525706206809 2.90867232913167 -5.96658473293642 0.89398215925177 0.798013571466416 1.10961979761747 9.92777872602776 3.64489080528636 -5.3771433654551 3.1519872174373e-23 0.000267505356131451 7.56769136786437e-08 3.84992724415556e-22 0.00273237613762839 8.48662531967647e-07 TRUE TRUE TRUE Lacticaseibacillus_Lactobacillus casei_rhamnosus (SPP3) 4.16422050964406 2.78569102733099 -1.37852948231307 2.33819313917015 2.25607068744201 2.54113126456594 1.78095660272187 1.23475343340836 -0.542486530127572 1 1 1 1 1 1 FALSE FALSE FALSE Faecalicatena multispecies_sppn3_2_nov_92.067% (SPPN3) -0.520006395817652 -0.0382053025479761 0.481801093269676 1.25595163273669 1.16477470615791 1.47002374463981 -0.414033775078241 -0.0328005942659924 0.327750551667264 1 1 1 1 1 1 FALSE FALSE FALSE