taxon lfc_(Intercept) lfc_GroupL. rhamnosus TX se_(Intercept) se_GroupL. rhamnosus TX W_(Intercept) W_GroupL. rhamnosus TX p_(Intercept) p_GroupL. rhamnosus TX q_(Intercept) q_GroupL. rhamnosus TX diff_(Intercept) diff_GroupL. rhamnosus TX Staphylococcus saprophyticus (SP10) 2.23281675929047 -4.54409568741718 0.567954522304575 0.871597155770502 3.93133018860459 -5.21352743906117 8.44771549856404e-05 1.85283108988915e-07 0.00473072067919586 1.03758541033792e-05 TRUE TRUE Triticum aestivum (SP12) -1.01718773625236 1.95591330366849 1.55871367679214 2.26294374838378 -0.652581517309681 0.864322546711746 0.514026104240961 0.387410727721696 1 1 FALSE FALSE Corynebacterium stationis (SP14) 3.10801348569674 -6.29448914022971 0.573953506885033 0.880006731213502 5.41509625503394 -7.15277385611563 6.12557441571759e-08 8.50416434513883e-13 3.73660039358773e-06 5.18754025053469e-11 TRUE TRUE Stenotrophomonas maltophilia (SP17) 0.252160003160933 -0.582782175158101 0.794347116285363 1.18860990979027 0.317443090043707 -0.49030566745059 0.750907415475329 0.623917617185013 1 1 FALSE FALSE Cutibacterium acnes (SP18) -0.657386631618401 1.23631109440057 0.901434252507054 1.3387048568445 -0.729267419992182 0.923512817690606 0.46583809738008 0.355740023823622 1 1 FALSE FALSE Ligilactobacillus murinus (SP2) -5.15171875977731 10.2249753507184 0.791558240957384 1.18470318029783 -6.50832559527943 8.63083303967148 7.59930679214735e-11 6.09067356243116e-18 4.71157021113136e-09 3.77621760870732e-16 TRUE TRUE Lachnospiraceae_[G-11] bacterium_MOT-177 (SP23) 0.580672190333794 -1.23980654950382 0.854929881551775 1.27350300447445 0.679204462101409 -0.973540341206708 0.497008320440112 0.330284820591191 1 1 FALSE FALSE Ligilactobacillus animalis (SP24) 5.19324848338319 -10.4649591356026 0.458329009865158 0.717171634117101 11.3308308477159 -14.5919869634636 9.23247740123529e-30 3.15862321200954e-48 5.81646076277823e-28 1.98993262356601e-46 TRUE TRUE Mammaliicoccus lentus (SP25) 3.56100977885301 -7.20048172654226 1.03715270189301 1.52916720595966 3.43344791210925 -4.70876023137279 0.000595956697944522 2.49228030256958e-06 0.0321816616890042 0.000134583136338757 TRUE TRUE Lachnospiraceae_[G-14] bacterium_MOT-185 (SP26) 0.503542477141476 -1.08554712311919 1.04771699899462 1.54400316954384 0.480609246222664 -0.703073118327795 0.630794242697127 0.482010183672173 1 1 FALSE FALSE Corynebacterium ammoniagenes (SP27) 2.82948410944855 -5.73743038773334 0.593134381557319 0.906883851942864 4.7703930128271 -6.3265327477623 1.838668234541e-06 2.50731108589063e-10 0.00011032009407246 1.50438665153438e-08 TRUE TRUE Streptococcus thermophilus (SP28) -0.0389293362007631 -0.00060349643470924 0.587246709043908 0.89863537945047 -0.0662912803106954 -0.000671569858598587 0.947145925259679 0.999464164818601 1 1 FALSE FALSE Actinidia eriantha (SP39) -0.202017326839593 0.325572484842951 0.987572449884633 1.4595586252259 -0.204559500280908 0.223062286924282 0.837916300309151 0.823487029539002 1 1 FALSE FALSE Enterococcus gallinarum (SP40) -2.11693197838619 4.15540178793615 1.14608569702875 1.68221199708813 -1.84709745865809 2.47020101814102 0.0647330167559856 0.0135037146529049 1 0.58065973007491 FALSE FALSE Mollicutes_[G-1] bacterium_MOT-186 (SP42) 0.504970086006264 -1.08840234084876 0.957008625453411 1.41666486734989 0.527654686254285 -0.768284981108343 0.597739029488253 0.442317895423607 1 1 FALSE FALSE Atopostipes sp._MOT-201 (SP45) 1.99748365051587 -4.07342946986797 0.509059335257444 0.788881631388869 3.92387195788422 -5.1635496477418 8.71370601867469e-05 2.42310273941316e-07 0.00479253831027108 1.33270650667724e-05 TRUE TRUE Enterococcus faecalis (SP47) -2.77289287514728 5.46732358145832 0.859988528170633 1.28059397413788 -3.22433705138576 4.26936538190338 0.00126264691907929 1.96029918624491e-05 0.0669202867112022 0.0010389585687098 FALSE TRUE Pelomonas saccharophila (SP49) -0.808732253228044 1.53900233761985 0.65212679884148 0.989484971706125 -1.24014571194556 1.55535696006198 0.214921503876004 0.119861078570365 1 1 FALSE FALSE Limosilactobacillus reuteri (SP51) 1.19540429132038 -2.469270751477 0.719894941237035 1.08434832518454 1.66052603351574 -2.27719330968373 0.0968086751262501 0.0227746844855034 1 0.865235645763813 FALSE FALSE Clostridium disporicum (SP53) 0.242200987241284 -0.562864143318804 1.00167958782231 1.47936112825592 0.241794871519582 -0.380477851261637 0.808939112957827 0.703590734669179 1 1 FALSE FALSE Lactobacillus johnsonii (SP56) 1.79597169289337 -3.67040555462298 0.905411921035827 1.34428326163892 1.9835962517908 -2.73038105834042 0.0473008673951254 0.00632611562346886 1 0.302657011508608 FALSE FALSE Staphylococcus equorum (SP65) 3.48777660590442 -7.05401538064507 0.841999836028167 1.25537999701695 4.14225330774025 -5.61902802132176 3.43910200345847e-05 1.9203471297846e-08 0.00199467916200591 1.11380133527507e-06 TRUE TRUE Pseudomonas helleri (SP68) -0.292826723306591 0.507191277776946 0.47905006629986 0.746544090160071 -0.611265385199418 0.679385564043774 0.541023902905985 0.496893594302132 1 1 FALSE FALSE Jeotgalicoccus halotolerans (SP7) 3.15262400639982 -6.38371018163588 0.763722781830402 1.145716171604 4.12796905029333 -5.57180769535504 3.65981358721204e-05 2.52109618264644e-08 0.00208609374471086 1.43702482410847e-06 TRUE TRUE Stenotrophomonas [Pseudomonas] hibiscicola (SP70) -0.701003301308115 1.32354443377999 0.730444405999441 1.09911791617177 -0.959694256743547 1.20418784400304 0.337209114636626 0.228516983301391 1 1 FALSE FALSE Dubosiella newyorkensis (SP73) 1.87066270152095 -3.81978757187815 1.12892552856695 1.65809376541433 1.65702932052176 -2.30372229336719 0.0975135473267081 0.0212382375812298 1 0.828291265667962 FALSE FALSE Eubacteriales_[G-2] bacterium_MOT-162 (SP74) 0.424082614302841 -0.926627397441917 0.939220344357552 1.39170654109214 0.451526222627687 -0.665820968776037 0.651610330008317 0.505525540380771 1 1 FALSE FALSE Ralstonia sp._HMT_406 (SP76) -0.128246167646093 0.178030166455951 0.681943781819177 1.03122199648235 -0.188059736103143 0.172640000953468 0.850829823821948 0.862934407742846 1 1 FALSE FALSE Eubacteriales_[G-4] bacterium_MOT-164 (SP8) 0.509462963653555 -1.09738809614335 0.933412682104477 1.38355892199455 0.545806772739489 -0.793163253619401 0.585198767247345 0.427682713709812 1 1 FALSE FALSE Bradyrhizobium pachyrhizi (SP80) -0.241744160929992 0.405026153023748 0.517129634629184 0.800238916882569 -0.467473037207272 0.506131537068427 0.640161478383661 0.612764312560694 1 1 FALSE FALSE Akkermansia muciniphila (SP83) 2.06625819503278 -4.21097855890179 1.04604571098039 1.54165600307685 1.97530392156211 -2.73146444504966 0.0482336684843266 0.00630535440642934 1 0.302657011508608 FALSE FALSE Staphylococcus ureilyticus (SP9) 0.521231447811289 -1.12092506445881 0.481410011876785 0.749880958149522 1.08271833769983 -1.49480401159261 0.278933462016323 0.13496559908203 1 1 FALSE FALSE Bifidobacterium pseudolongum (SP93) 2.07793053282266 -4.23432323448156 1.20538535507574 1.76558049669108 1.72387238991475 -2.39826121913852 0.0847308826609886 0.0164731128935408 1 0.691870741528716 FALSE FALSE Oribacterium parvum_nov_89.770% (SPN10) 0.207791371068097 -0.494044910972429 0.952124068418859 1.40981101107711 0.218239805042598 -0.350433431921471 0.827242272521685 0.726013440041395 1 1 FALSE FALSE Fusobacterium varium_nov_96.696% (SPN102) 0.138476653012102 -0.35541547486044 0.536114774586144 0.826922710093972 0.258296655075399 -0.429804950960956 0.796177967566736 0.667337531116644 1 1 FALSE FALSE Duncaniella freteri_nov_93.293% (SPN107) 2.06785550723057 -4.21417318329737 1.12390371774637 1.65103634216315 1.83988670433175 -2.5524412005226 0.0657848723999106 0.0106970963655998 1 0.472231722274653 FALSE FALSE Enterococcus faecalis_nov_95.825% (SPN117) -2.89809870126263 5.71773523368903 0.63310739460284 0.962860021211374 -4.57757834763668 5.93828293597189 4.70389636298568e-06 2.88022666266815e-09 0.000277529885416155 1.69933373097421e-07 TRUE TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.867% (SPN118) 2.31908458289224 -4.71663133462071 1.15870271357685 1.69994698169558 2.00144916872885 -2.77457555171291 0.0453440064632386 0.00552737938625194 1 0.270841589926345 FALSE FALSE Duncaniella freteri_nov_89.775% (SPN149) 1.65118704647159 -3.38083626177942 1.01082377113386 1.49219844907826 1.63350634761925 -2.26567469217502 0.102362546803078 0.0234713081649758 1 0.865235645763813 FALSE FALSE Fusicatenibacter saccharivorans_nov_90.526% (SPN15) 0.207567907287955 -0.493597983412146 0.951801760907378 1.40935877120812 0.218078927580545 -0.350228766085606 0.827367615632275 0.726167019992654 1 1 FALSE FALSE Alistipes senegalensis_nov_93.443% (SPN173) 1.03281420712341 -2.14409058308306 1.01094080818286 1.49236276206305 1.02163667621636 -1.43670871291311 0.306952892190823 0.150800778205516 1 1 FALSE FALSE Peptococcus sp._HMT_168_nov_84.866% (SPN178) 0.624589313145552 -1.32764079512734 1.05015101587432 1.54742157979361 0.594761423551583 -0.857969678375828 0.552002957107214 0.390909206770496 1 1 FALSE FALSE Duncaniella freteri_nov_89.718% (SPN181) 1.17612084323672 -2.43070385530968 1.02200000967537 1.50789003133472 1.1508031625267 -1.61199013508838 0.249813223444786 0.106964086419381 1 1 FALSE FALSE Oscillospiraceae_[G-6] bacterium_MOT-153_nov_91.631% (SPN188) 1.29966319429462 -2.67778855742547 0.804925936113196 1.20342996931899 1.61463699451703 -2.22513035714142 0.106389329110069 0.0260724883627575 1 0.912537092696514 FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.000% (SPN193) 1.07993679383964 -2.23833575651551 0.978166553613109 1.44635686396675 1.10404183198721 -1.5475681087285 0.269574991894817 0.121726314597509 1 1 FALSE FALSE Lachnospiraceae_[G-14] bacterium_MOT-185_nov_92.719% (SPN208) -1.27810096993125 2.47773977102627 1.0874107081439 1.59975941326252 -1.17536176566887 1.54882024789791 0.239850013245384 0.121424936734918 1 1 FALSE FALSE Actinidia eriantha_nov_97.011% (SPN219) -0.711792197509233 1.34512222618223 0.498920070896407 0.774597633316018 -1.42666579083571 1.73654316554496 0.153676250625398 0.0824678388711781 1 1 FALSE FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.423% (SPN29) 0.523491413183108 -1.12544499520245 0.941612892864055 1.39506320847379 0.555951832382872 -0.806734052167926 0.578243783352929 0.419819721051494 1 1 FALSE FALSE Duncaniella freteri_nov_88.934% (SPN33) 1.72818036866653 -3.53482290616929 1.05356111591566 1.55221095728579 1.6403228465437 -2.27728253661494 0.100938057756426 0.0227693590990477 1 0.865235645763813 FALSE FALSE Yaniella halotolerans_nov_97.040% (SPN35) 1.35528921599294 -2.78904060082212 0.723823036628195 1.08984766934149 1.872404092451 -2.55911048789719 0.0611507192886903 0.0104940382727701 1 0.472231722274653 FALSE FALSE Oscillospiraceae_[G-1] bacterium_MOT-147_nov_96.674% (SPN40) 0.42087461982303 -0.920211408482294 0.897925905057775 1.33378483520126 0.468718652009432 -0.6899249295659 0.639270752935489 0.490241397613252 1 1 FALSE FALSE Lachnoclostridium [Clostridium] aminophilum_nov_89.792% (SPN43) -0.837410960446906 1.59635975205758 1.12745229062347 1.65602331485041 -0.742746249585269 0.963971785748545 0.457635323099628 0.335060071441678 1 1 FALSE FALSE Duncaniella freteri_nov_93.699% (SPN51) 2.53754379422003 -5.1535497572763 0.90583656700336 1.34487881192398 2.80132629511149 -3.83198077892508 0.00508930315578295 0.000127115672688236 0.25955446094493 0.00661001497978827 FALSE TRUE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_92.917% (SPN52) 0.178126296824643 -0.434714762485521 0.909274501481757 1.34970048529149 0.195899364311182 -0.322082393259004 0.844688934834788 0.747390276307936 1 1 FALSE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_88.105% (SPN55) 1.83757454420631 -3.75361125724886 1.06752181246405 1.57181982272113 1.72134613340109 -2.38806713275229 0.0851880327153145 0.0169372475855177 1 0.691870741528716 FALSE FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_85.887% (SPN59) 1.21678937968806 -2.51204092821236 0.69403751874125 1.04815071294263 1.75320403700208 -2.39664095744393 0.0795669903257723 0.0165461279929784 1 0.691870741528716 FALSE FALSE Parafannyhessea umbonata_nov_92.161% (SPN67) 0.162560965853464 -0.403584100543162 0.886734890425969 1.31809203767774 0.18332532937254 -0.30618810295995 0.854542761207804 0.759461430156382 1 1 FALSE FALSE Turicibacter sanguinis_nov_95.923% (SPN82) -2.06286567600932 4.04726918318241 1.00693105276646 1.48673340994343 -2.04866626204621 2.72225615978888 0.0404947603967984 0.00648378626078061 1 0.302657011508608 FALSE FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.198% (SPN83) 0.147028870355918 -0.372519909548072 0.864198699593439 1.28649587997145 0.17013317704029 -0.289561680956444 0.864905402346727 0.772151585746049 1 1 FALSE FALSE Staphylococcus saprophyticus_xylosus (SPP1) -1.30520712465608 2.53195208047592 0.440637645552638 0.691957291167091 -2.96208718848594 3.65911612291187 0.0030556124451586 0.000253086647079548 0.158891847148247 0.012907419001057 FALSE TRUE Sphingomonas aquatilis_melonis (SPP2) -1.0000601670929 1.92165816534957 0.426849655863658 0.672182876051742 -2.34288619741171 2.85883237109071 0.0191352187290177 0.00425203409328687 0.956760936450883 0.212601704664344 FALSE FALSE Lacticaseibacillus_Lactobacillus casei_rhamnosus (SPP3) -0.938569516192565 1.79867686354889 0.900437359340011 1.33730681957321 -1.04234848371963 1.34499939521951 0.297250141564917 0.178625429873611 1 1 FALSE FALSE Faecalicatena multispecies_sppn3_2_nov_92.067% (SPPN3) 0.473378648746918 -1.02521946633007 0.874647964915629 1.30114500996775 0.541221917543227 -0.787936362569979 0.588354632264021 0.430733930249625 1 1 FALSE FALSE