#Species F19957.S1 F19957.S2 F19957.S3 F19957.S4 F19957.S5 F19957.S6 Ligilactobacillus murinus (SP1) 0 0 0 7 199 129 Pseudomonas aeruginosa (SP10) 0 0 0 3287 26996 5084 Parabacteroides goldsteinii (SP11) 0 14 74 7 33 0 Enterococcus faecalis (SP12) 52540 29417 74416 19343 15702 35704 Ralstonia pickettii (SP13) 3 3 18 8 0 0 Mogibacterium timidum (SP14) 0 0 0 2 0 0 Fretibacterium fastidiosum (SP15) 0 0 0 5 0 0 Shigella sonnei (SP16) 35806 85238 45729 56432 43414 54733 Mammaliicoccus sciuri (SP17) 0 0 0 0 0 45 Escherichia coli (SP18) 0 98637 0 0 0 0 Treponema denticola (SP19) 0 0 0 4 0 0 Faecalibaculum rodentium (SP2) 0 28 36 12 22 0 Stomatobaculum sp. HMT373 (SP20) 0 0 0 0 0 3 Blautia marasmi (SP21) 0 14 0 7 23 0 Herbaspirillum huttiense (SP22) 0 0 5 6 0 0 Dietzia kunjamensis (SP23) 0 0 0 2 0 0 Aerococcus urinaeequi (SP24) 0 0 0 0 0 4 Corynebacterium mastitidis (SP25) 13 0 0 0 0 0 Streptococcus thoraltensis (SP26) 0 0 80 10 21 0 Blautia hominis (SP27) 0 0 0 0 27 0 Streptococcus oralis (SP28) 0 0 0 6 4 0 Streptococcus acidominimus (SP29) 842 0 424 0 105 10 Shigella boydii (SP3) 73996 0 96103 122864 89317 116670 Cutibacterium acnes (SP30) 17 5 14 18 6 9 Paracoccus tibetensis (SP31) 0 0 0 35 0 17 Streptococcus cristatus_clade_578 (SP32) 0 2 0 0 0 0 Pseudomonas marginalis (SP33) 0 0 10 8 0 0 Dialister invisus (SP34) 0 0 0 0 4 0 Rothia nasimurium (SP35) 0 112 0 0 0 0 Roseomonas aestuarii (SP36) 0 0 0 0 0 14 Bifidobacterium pseudolongum (SP37) 0 38 0 0 0 0 Erysipelotrichaceae_[G-1] bacterium_MOT-189 (SP38) 0 0 0 0 7 0 Veillonella atypica (SP39) 0 0 0 3 0 0 Akkermansia muciniphila (SP4) 0 4 0 0 2 0 Neisseria mucosa (SP40) 0 0 0 3 0 0 Fusobacterium nucleatum (SP41) 0 0 0 5 0 0 Agrococcus lahaulensis (SP42) 0 0 0 2 0 0 Actinomyces israelii (SP43) 0 3 0 0 0 0 Porphyromonas gingivalis (SP44) 0 0 0 0 0 5 Xanthobacter flavus (SP45) 0 0 0 0 4 0 Phyllobacterium myrsinacearum (SP46) 0 0 10 3 0 17 Streptococcus danieliae (SP5) 5278 428 3542 81 67 1478 Escherichia fergusonii (SP6) 161776 128402 204386 254324 197031 245391 Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP7) 0 0 0 0 0 11 Pseudomonas fluorescens (SP8) 0 0 0 0 5 0 Streptococcus oralis_subsp._tigurinus_clade_071 (SP9) 0 0 1 0 0 0 Muribaculaceae_[G-2] bacterium_MOT-104_nov_88.934% (SPN1) 0 0 0 0 4 0 Oscillospiraceae_[G-4] bacterium_MOT-151_nov_96.458% (SPN10) 0 0 0 0 2 0 Parafannyhessea umbonata_nov_92.161% (SPN11) 0 15 20 5 8 0 Anaerostipes caccae_nov_96.328% (SPN12) 0 18 30 0 0 0 Klebsiella oxytoca_nov_91.313% (SPN13) 0 0 0 10 0 0 Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.000% (SPN14) 0 0 10 0 0 0 Bacteroides uniformis_nov_96.099% (SPN15) 0 3 0 6 0 0 Eggerthella timonensis_nov_90.929% (SPN16) 0 0 9 0 0 0 Parasutterella excrementihominis_nov_97.769% (SPN17) 0 0 6 0 0 0 Alistipes ihumii_nov_93.661% (SPN18) 0 0 0 0 6 0 Sphingomonas deserti_nov_96.520% (SPN19) 0 0 0 0 0 5 Prevotella shahii_nov_87.602% (SPN2) 0 0 0 0 4 0 Citrobacter farmeri_nov_93.911% (SPN20) 0 4 0 0 0 0 Anaeromassilibacillus senegalensis_nov_89.397% (SPN3) 0 0 0 0 3 0 Shigella flexneri_nov_87.276% (SPN4) 0 0 3 0 0 0 Akkermansia muciniphila_nov_92.560% (SPN5) 0 0 0 0 2 0 Shigella sonnei_nov_92.814% (SPN6) 0 0 0 2 0 0 Rickettsiella massiliensis_nov_91.089% (SPN7) 0 0 0 2 0 0 Actinidia eriantha_nov_86.005% (SPN8) 0 0 0 0 2 0 Dubosiella newyorkensis_nov_81.391% (SPN9) 0 0 2 0 0 0 Olsenella multispecies_sppn1_2_nov_91.966% (SPPN1) 0 0 13 0 5 0