Taxon	F20250829.S04	F20250829.S06	F20250829.S08	F20250829.S20	F20250829.S34	F20250829.S35	F20250829.S38	F20250829.S39	F20250829.S40	F20250829.S48	F20250829.S49	F20250829.S51	F20250829.S52
Roseburia faecis (SP1005)	0	21	971	4	0	0	105	0	53	65	216	21	0
Subdoligranulum variabile (SP1036)	0	8	1833	0	0	0	0	0	0	16	0	0	14
Faecalibaculum rodentium (SP105)	14	461	1953	3005	5806	1254	4482	3786	2434	27090	5215	163	883
Uruburuella testudinis (SP1148)	112	457	158	252	283	321	774	200	408	2106	378	314	138
Streptococcus entericus (SP1171)	27	91	53	68	49	54	304	42	127	615	53	117	23
Lachnospiraceae_[G-14] bacterium_MOT-184 (SP119)	0	0	46	0	0	11	404	41	0	0	412	0	0
Eubacteriales_[G-4] bacterium_MOT-164 (SP120)	0	0	434	0	0	0	0	0	0	16	0	0	0
Nitrincola lacisaponensis (SP1395)	17	63	24	30	34	54	102	28	43	287	24	23	13
Streptococcus pseudoporcinus (SP1532)	0	42	32	21	0	31	97	20	37	182	16	39	0
Austwickia chelonae (SP1660)	23	99	56	43	34	36	74	26	55	379	36	67	21
Mesonia hippocampi (SP1789)	10	88	29	58	39	103	106	35	50	237	52	55	11
Lachnoclostridium [Clostridium] scindens (SP18)	0	0	92	0	16	0	240	0	57	202	132	0	0
Eubacteriales_[G-1] bacterium_MOT-159 (SP215)	0	0	0	6	209	0	28	13	17	406	0	0	0
Cutibacterium acnes (SP216)	0	0	167	14	913	0	126	128	0	40	7380	8	15
Epilithonimonas hominis (SP233)	22	76	34	36	46	73	85	45	46	286	37	0	36
Rodentibacter heylii (SP238)	44	75	0	125	0	20	1341	19	0	0	112	0	78
Eubacteriales_[G-4] bacterium_MOT-165 (SP285)	0	0	151	0	49	0	27	10	9	151	25	0	0
Mollicutes_[G-1] bacterium_MOT-186 (SP366)	0	0	0	0	6	0	12	24	0	207	83	0	0
Oceanotoga teriensis (SP367)	11	76	17	35	49	48	122	24	40	163	62	54	27
Prevotella copri (SP385)	0	0	2998	0	0	0	9	0	0	9	0	0	0
Streptococcus danieliae (SP391)	0	0	23	0	0	0	126	0	0	408	0	0	0
Erysipelatoclostridium [Clostridium] saccharogumia (SP417)	0	8	0	0	16	4	74	13	0	23	180	0	0
Lachnoclostridium pacaense (SP425)	0	0	57	0	0	0	1011	0	19	14	11	0	0
Acutalibacter muris (SP479)	0	0	0	0	12	9	111	59	86	680	227	10	12
Pasteurella testudinis (SP496)	45	194	89	128	111	120	303	114	138	695	97	106	68
Faecalibacterium prausnitzii (SP52)	0	66	1629	0	0	0	7	0	0	0	26	9	23
Turicibacter sanguinis (SP572)	0	278	3218	1043	1012	199	981	634	608	4305	1386	43	58
Porphyromonas pogonae (SP577)	30	188	88	78	71	104	172	87	76	505	136	30	58
Dubosiella newyorkensis (SP583)	12	269	453	3579	2086	555	3011	3410	1725	18737	5880	109	549
Akkermansia muciniphila (SP657)	14	22	279	165	1350	26	2015	571	100	899	2846	30	72
Romboutsia timonensis (SP687)	0	33	317	192	184	33	360	61	50	562	157	0	17
Idiomarina loihiensis (SP694)	0	33	12	13	16	15	36	0	26	112	12	40	0
Eubacteriales_[G-2] bacterium_MOT-162 (SP706)	0	0	248	0	37	0	13	13	0	66	76	0	0
Corynebacterium falsenii (SP75)	329	1483	459	974	1214	1555	3390	734	1592	6995	1065	739	507
Acinetobacter albensis (SP765)	0	20	0	0	0	0	0	0	0	0	0	0	5
Lawsonibacter asaccharolyticus (SP77)	0	0	205	0	14	0	144	78	7	82	293	0	0
Lachnospiraceae_[G-3] bacterium_MOT-168 (SP818)	0	0	0	0	0	0	16	0	12	105	20	0	0
Lachnospiraceae_[G-11] bacterium_MOT-177 (SP877)	0	0	22	20	9	0	266	113	0	0	486	0	0
Clostridioides difficile (SP975)	0	0	6684	0	0	0	4	0	0	0	0	0	0
Rhodanobacter spathiphylli_umsongensis_xiangquanii (SPP102)	0	50	15	13	0	9	34	14	26	141	24	43	17
Pseudomonas alcaliphila_chengduensis_composti_indoloxydans_men ...(8 species) (SPP106)	24	65	31	44	38	59	196	26	60	257	46	55	37
Mammaliicoccus fleurettii_lentus (SPP111)	49	0	0	4915	8239	0	152	0	0	51	0	0	0
Clostridium disporicum_saudiense (SPP117)	0	19	78	103	326	22	391	191	32	166	109	0	13
Enterococcus caccae_crotali_haemoperoxidus_moraviensis_phoenicu ...(14 species) (SPP124)	0	330	0	358	316	363	0	273	0	0	328	0	0
Catenococcus_Vibrio alginolyticus_azureus_diabolicus_galatheae_harveyi ...(12 species) (SPP131)	45	70	24	41	47	45	98	31	73	294	24	31	36
Staphylococcus argenteus_aureus_capitis_caprae_croceilyticus_epid ...(17 species) (SPP141)	0	0	250	0	0	67	0	1619	0	0	879	0	371
Carnobacterium_Enterococcus_Vagococcus bulliens_diestrammenae_divergens_fessus_italicus_s ...(6 species) (SPP168)	25	65	63	0	0	0	345	0	120	892	0	94	0
Malaciobacter canalis_marinus (SPP219)	90	523	122	361	290	401	725	226	396	1826	346	278	99
Lactobacillus gasseri_hominis_johnsonii_taiwanensis (SPP222)	42	103	56182	557	107	42	3149	155	199	2356	17575	98	605
Lacticaseibacillus casei_rhamnosus (SPP226)	709	2109	1858	0	0	0	20	8	0	40	770	1987	477
Mesocricetibacter_Pasteurella_Rodentibacter caecimuris_heidelbergensis_heylii_intestinalis_pne ...(6 species) (SPP228)	0	0	0	0	0	0	608	0	41	0	0	0	0
Staphylococcus casei_cohnii_cohnii_subsp._cohnii_edaphicus_gallin ...(9 species) (SPP229)	0	461	59	332	4611	15255	958	13646	51	453	3390	203	1567
Streptococcus alactolyticus_macedonicus_pasteurianus (SPP235)	12	101	2794	38	20	29	258	19	81	346	31	71	37
Vibrio cincinnatiensis_injensis_metschnikovii (SPP237)	3494	12900	5074	256	279	347	739	225	410	2143	5574	5193	2893
Salinivibrio costicola_kushneri_proteolyticus_sharmensis (SPP239)	2237	7457	2686	5002	4435	6244	16976	3078	8973	39812	4854	5504	1847
Halomonas alkaliantarctica_boliviensis_glaciei_neptunia_prof ...(10 species) (SPP241)	546	1952	975	374	493	556	1505	321	710	3965	1236	863	612
Ligilactobacillus animalis_apodemi_faecis_murinus (SPP259)	14	71	119	30	59	74	5611	25	59	142	47	65	21
Aliarcobacter cryaerophilus_lanthieri (SPP264)	0	55	28	0	27	31	67	0	66	95	0	7	0
Paracoccus aestuarii_beibuensis_hibisci_marinus_pacificus_pue ...(8 species) (SPP268)	47	286	114	158	168	242	511	88	258	1177	120	116	76
Enterococcus casseliflavus_gallinarum_saccharolyticus (SPP279)	469	911	559	575	0	482	4948	0	2643	13659	611	1466	360
Pseudoalteromonas aestuariivivens_arabiensis_atlantica_carrageenovor ...(19 species) (SPP281)	0	97	0	0	46	0	75	0	57	169	75	0	50
Pseudoalteromonas agarivorans_antarctica_arctica_distincta_elyakovii ...(11 species) (SPP282)	172	770	262	0	0	34	71	36	0	80	415	466	226
Enterococcus canintestini_canis_dispar_durans_faecalis_faecium_ ...(15 species) (SPP288)	2808	137016	3744	192687	156104	158245	15129	132661	3481	18783	174331	2535	87464
Adlercreutzia caecimuris_mucosicola (SPP30)	0	0	51	0	0	0	0	0	9	68	0	0	0
Limosilactobacillus antri_caviae_frumenti_oris_panis_reuteri_reuteri_c ...(8 species) (SPP304)	0	0	1702	0	0	0	119	6	0	17	0	0	0
Muribacter muris_sp._MOT-142_sp._MOT-143 (SPP311)	0	23	0	0	0	0	72	0	0	0	0	0	0
Aeromonas [Haemophilus] piscium_allosaccharophila_aquatica_a ...(25 species) (SPP313)	14	67	25	20	18	17	95	15	25	124	25	11	7
Streptococcus acidominimus_cuniculi_sp._MOT-012 (SPP316)	27	79	0	46	23	0	1231	51	0	33	130	0	0
Bifidobacterium choerinum_pseudolongum (SPP320)	62	359	1538	18099	4686	8482	503	18733	153	2781	32032	58	18844
Sporosarcina sp._MOT-204_sp._MOT-205 (SPP321)	0	0	0	0	0	0	13	0	0	0	0	23	0
Corynebacterium freneyi_xerosis (SPP336)	0	93	22	0	0	0	0	0	0	0	38	58	14
Aliarcobacter_Arcobacter butzleri_lacus (SPP338)	0	34	0	35	0	28	0	20	0	96	21	0	0
Streptococcus cristatus_downii_gordonii_gwangjuense_infantis_inf ...(18 species) (SPP339)	30	56	0	22	34	0	92	0	82	27	58	36	0
Lactococcus allomyrinae_cremoris_lactis_taiwanensis (SPP35)	20	93	45	0	0	0	363	0	0	0	52	92	16
Escherichia_Pseudescherichia_Shigella boydii_coli_fergusonii_flexneri_marmotae_sonnei_vu ...(7 species) (SPP351)	2223	7285	7575	29	16	25	170	42	108	202	3863	3412	1883
Lactobacillus acidophilus_crispatus_gallinarum (SPP358)	0	0	3724	0	0	0	15	0	0	0	0	0	0
Corynebacterium lowii_mastitidis (SPP368)	0	0	0	0	0	0	39	0	0	83	0	0	0
Lactiplantibacillus fabifermentans_paraplantarum_pentosus_plantarum (SPP369)	673	1984	881	0	0	0	0	0	21	28	742	1599	413
Bacillus glycinifermentans_haynesii_licheniformis_paraliche ...(7 species) (SPP5)	0	43	0	20	0	0	95	0	37	232	0	14	0
Buttiauxella_Enterobacter_Erwinia_Klebsiella_Kluyv ...(10 species) adecarboxylata_aerogenes_agglomerans_agrestis_amni ...(30 species) (SPP54)	71	78	0	60	35	73	7485	41	148	348	64	86	69
Pseudomonas antarctica_azotoformans_canadensis_costantinii_ext ...(14 species) (SPP65)	26	41	32	42	21	27	58	12	148	115	26	88	13
Halomonas alkaliphila_andesensis_aquamarina_axialensis_hydro ...(10 species) (SPP81)	0	128	0	0	0	73	109	0	0	299	61	0	0