taxon lfc_(Intercept) lfc_GroupFemale Healthy Baseline se_(Intercept) se_GroupFemale Healthy Baseline W_(Intercept) W_GroupFemale Healthy Baseline p_(Intercept) p_GroupFemale Healthy Baseline q_(Intercept) q_GroupFemale Healthy Baseline diff_(Intercept) diff_GroupFemale Healthy Baseline passed_ss_(Intercept) passed_ss_GroupFemale Healthy Baseline Haemophilus -0.249351366541614 0.0812480823162904 0.610771195408848 0.818133920666318 -0.408256591692571 0.0993090254100686 0.687900835604216 0.921990564205853 1 1 FALSE FALSE TRUE TRUE Kingella -0.489436225016979 0.338710452113717 0.589608488622098 0.768313079589118 -0.830103762855892 0.44084951969691 0.415817671472225 0.663826985069674 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum 0.772158922724745 -1.60270978282082 0.303765689728505 0.516143523169348 2.54195568767122 -3.10516302322169 0.0182214727711587 0.00498619847734094 1 0.393909679709934 FALSE FALSE FALSE FALSE Peptostreptococcus 0.670548838686043 -1.58485536223956 0.41496433517553 0.596348304780966 1.61591920520688 -2.65760018018609 0.130109215427446 0.0197244506310225 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-4] -0.555337707822642 -0.0351647880958155 0.0846672402968687 0.285773244070693 -6.55906234661082 -0.123051366163295 0.0224640254591392 0.913317056291535 1 1 FALSE FALSE FALSE TRUE Oribacterium 0.344517752995119 -0.713430137293259 0.457212201795218 0.654015646212529 0.753518282413262 -1.09084567230892 0.460374881607207 0.288981861484152 1 1 FALSE FALSE TRUE FALSE Actinomyces -0.181320366732492 -0.201556348338814 0.522447452022616 0.650090046655471 -0.347059529203413 -0.310043738364806 0.731237236874283 0.75890820216485 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] -0.44850581492673 0.5655032092605 0.269838404170686 0.431788744362822 -1.66212743625266 1.30967566117314 0.120397035311776 0.212978922590185 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -0.377559378887941 0.526737158453451 0.244758107911535 0.412858151430102 -1.54258170284763 1.27583083107087 0.183575705005393 0.258069749761695 1 1 FALSE FALSE TRUE TRUE Desulfobulbus -1.62514949019018 2.85213500122324 0.226011952268883 0.407428732641132 -7.1905466674469 7.00032857951486 0.00198190349794536 0.00219174422630564 0.170443700823301 0.188490003462285 FALSE FALSE FALSE FALSE Dialister 0.358249589831425 -0.945999816115273 0.359558323148794 0.562304897051372 0.996360164031503 -1.68236097724905 0.331596038562593 0.108860925772587 1 1 FALSE FALSE TRUE FALSE Bergeyella -0.726028606263774 0.729135542761273 0.247674393324085 0.442145998555747 -2.93138340431405 1.64908321039423 0.00932089884515732 0.117485307714327 0.745671907612586 1 FALSE FALSE FALSE TRUE Leptotrichia 0.0282789275550021 -0.503754664110821 0.495819079322397 0.675146084943259 0.0570347708152922 -0.746141724502716 0.954970910828923 0.462540845590182 1 1 FALSE FALSE TRUE TRUE Butyrivibrio -0.280814330004112 0.561234903811258 0.0892235654950551 0.282110566092315 -3.14731123382057 1.98941468795467 0.195852146172925 0.296520727915794 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-6] -0.417061569637256 0.578646906412985 0.215690364110873 0.359138820318693 -1.93361243260209 1.61120679156741 0.110975346911506 0.168051233277204 1 1 FALSE FALSE TRUE TRUE Eikenella -0.0819723482444567 -0.190870376780056 0.316532238908389 0.540243875665392 -0.258969982100879 -0.353304100939545 0.798305102598157 0.727557201410574 1 1 FALSE FALSE TRUE TRUE Lancefieldella 0.596877752201162 -1.3017281440747 0.456689572911727 0.642546019501883 1.30696601719114 -2.02589091608385 0.207675660253878 0.0578605162129395 1 1 FALSE FALSE TRUE TRUE Eggerthia 0.459786305848084 -0.46686985689887 0.269995704620875 0.422341618526791 1.7029393356228 -1.10543180311569 0.187131046445373 0.349661392009487 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-7] 0.0408720657695165 -0.210911543331763 0.279268804409786 0.432252262702066 0.146353853792931 -0.487936238929848 0.886867794635872 0.637261478561966 1 1 FALSE FALSE TRUE TRUE Treponema 0.0541884602329572 -0.534989238751051 0.33218083336807 0.574430842744837 0.163129400584392 -0.931337941734953 0.871841423582612 0.361352437237755 1 1 FALSE FALSE TRUE FALSE Bacteroidetes_[G-3] -0.775978843269015 2.88747723489077 0.200327341929514 0.347083242140729 -3.87355433259853 8.31926432714376 0.0179392070290189 0.0011404983543759 1 0.102644851893831 FALSE FALSE FALSE FALSE Selenomonas 1.07794214903821 -2.20831864844835 0.258888330849385 0.564962499360806 4.16373401420449 -3.90878801857969 0.000374370196682828 0.00070537370854424 0.0333189475047717 0.0641890074775259 TRUE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-6] -0.597510780692022 1.52084477700047 0.376670644127807 0.517728796860015 -1.58629505645596 2.93753174678379 0.151333403051145 0.0187804279702847 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.487930186335026 0.435781855491811 0.380579811260788 0.492963822122334 -1.28207059832892 0.884003725903577 0.231856398067488 0.399692909444336 1 1 FALSE FALSE TRUE FALSE Lautropia -0.388943411095531 0.240092878827916 0.6033078662836 0.825287546849794 -0.644684799970267 0.290920273478468 0.527263067475306 0.774437848382885 1 1 FALSE FALSE TRUE TRUE Capnocytophaga -0.0653852492125082 -0.204530014573606 0.295278962568821 0.561345542086634 -0.221435515228312 -0.364356709440191 0.82662658838043 0.718782284194482 1 1 FALSE FALSE TRUE TRUE Gemella 0.0247545982633374 -0.500263366748479 0.371294050247962 0.601253867014666 0.0666711417724185 -0.832033512287209 0.947395810586293 0.413592644411167 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.169787583308545 -0.0713818607951908 0.304484070311904 0.540715327102903 -0.557623862340713 -0.132013755144777 0.588269229999853 0.897357163829482 1 1 FALSE FALSE TRUE TRUE Slackia -0.0935204239435742 0.397080371530253 0.358830539423848 0.504903885146253 -0.260625598071263 0.786447447151713 0.800246446421958 0.451815080248281 1 1 FALSE FALSE TRUE TRUE Mogibacterium 0.358313068979068 -1.22579248135132 0.451465886221945 0.610298335252924 0.793665878008152 -2.0085135589356 0.437728182619025 0.059833131967279 1 1 FALSE FALSE FALSE FALSE Parvimonas 0.154402549018803 -0.723743311926263 0.43650859178346 0.651364555420164 0.353721672207996 -1.11111865990223 0.727074015356475 0.279077430462575 1 1 FALSE FALSE FALSE FALSE Bacteroidaceae_[G-1] -0.523549220313937 1.62182210676421 0.0843000275785383 0.307043674976584 -6.21054625191162 5.28205672006725 0.024959711305846 0.034023476739437 1 1 FALSE FALSE FALSE FALSE Prevotella 0.941866175685726 -2.14821171074613 0.37371604078873 0.713294819549512 2.52027227329582 -3.01167434820689 0.0184810789160157 0.00587106324702592 1 0.457942933268022 FALSE FALSE TRUE TRUE Aggregatibacter -0.205095746297291 0.336380983039356 0.516198486879564 0.69537763664851 -0.397319541824118 0.483738569247928 0.696381972523427 0.635125339585135 1 1 FALSE FALSE TRUE TRUE Shuttleworthia 0.541650892385516 -1.2419875932831 0.318563749055084 0.468851855707556 1.70029042536117 -2.64899792581344 0.117140550052031 0.0226268310458665 1 1 FALSE FALSE TRUE FALSE Anaerolineae_[G-1] -0.120755399391062 -0.607851001213737 0.245338960370885 0.386501754070202 -0.492198219184238 -1.57269920462853 0.656346400227005 0.213840248884744 1 1 FALSE FALSE TRUE TRUE Veillonellaceae_[G-1] 0.0678471651148376 -0.301429171411381 0.472820992948751 0.602953704135666 0.143494400897279 -0.49992092152992 0.88758693400119 0.623539727421096 1 1 FALSE FALSE TRUE FALSE Streptococcus 0.0823061602176972 -0.651272188430312 0.282261907585193 0.512815637694002 0.291594997432856 -1.26999284062185 0.772824921752211 0.214923507234666 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] -0.517228366215345 1.16394982404958 0.219561081191022 0.430061029372578 -2.35573792682023 2.7064759291203 0.0566127666273248 0.0352709196687155 1 1 FALSE FALSE TRUE FALSE Catonella 0.160047661634169 -0.524829686186549 0.397500643900517 0.541162756054079 0.402634974534091 -0.969818562558474 0.691958386158631 0.344989123809619 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] 0.58611287210766 -1.30022969079458 0.193735770407975 0.514898550168519 3.02532088355912 -2.5252152882719 0.00602109315576773 0.0189104350415277 0.505771825084489 1 FALSE FALSE FALSE FALSE Johnsonella -0.411306585235504 0.479607233671156 0.22398198225169 0.439500850333932 -1.83633782101864 1.09125439303872 0.093457461763625 0.298486687016758 1 1 FALSE FALSE TRUE TRUE Granulicatella 0.142134482614834 -0.702473340762061 0.453513962650413 0.651414967460524 0.313407070830136 -1.07838071866936 0.756679005817283 0.291583518641092 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.222798468707843 -0.853889838185935 0.483862961127876 0.724519170887024 0.460457787858991 -1.17856072343886 0.649167879562379 0.249669444109265 1 1 FALSE FALSE TRUE TRUE Rothia -1.91263868261261 2.69320152141083 0.441677745769296 0.810107609751655 -4.3303940507151 3.32449848512897 0.000196675517515972 0.00264148985761738 0.0177007965764375 0.22188514803986 TRUE FALSE TRUE TRUE Neisseria 0.028130420987801 -0.161626274330239 0.654999802001214 0.893748139063277 0.0429472205974023 -0.180840963204283 0.966169490494403 0.858312405009839 1 1 FALSE FALSE TRUE TRUE Megasphaera -0.224639433672744 0.707476053619929 0.294962202050167 0.450584533723461 -0.761587186803472 1.57012946665882 0.468160773811722 0.155025524243757 1 1 FALSE FALSE TRUE TRUE Filifactor -0.533296693795463 2.37181746127978 0.337242532268277 0.450836904406022 -1.58134470823871 5.26092127352496 0.157812599920471 0.00117216475084107 1 0.104322662824855 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-3] -0.32644280170955 0.597584180559247 0.242745123481355 0.391922259723002 -1.344796538146 1.52475182446029 0.211597588260349 0.161659269033378 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.22336839956326 -0.891907773196272 0.187005873270746 0.540164149954081 1.1944459051287 -1.65117913373572 0.242691543961052 0.110287494969839 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 0.263577436699197 -0.662005605899844 0.359911945524157 0.514917870618661 0.7323386733256 -1.28565280731947 0.487752103395089 0.239459062486757 1 1 FALSE FALSE TRUE FALSE Stomatobaculum 0.243741957811863 -1.11134938586633 0.571291152395639 0.702406424385454 0.426651028621329 -1.58220276364737 0.674692724108575 0.131015028635088 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-5] -0.0625914446960836 1.48714381660233 0.273814826489515 0.428738879113903 -0.228590414546015 3.46864697616387 0.828242343105301 0.0178753278834192 1 1 FALSE FALSE TRUE FALSE Olsenella 0.427555364219335 -1.16742348627456 0.387889747427751 0.617731355683693 1.10226002892477 -1.88985628709502 0.286653415683896 0.0770345644516631 1 1 FALSE FALSE TRUE FALSE Corynebacterium -0.263864445630841 0.0967101489321094 0.458746388071306 0.758000717191274 -0.575185881550367 0.127585827742305 0.570306662562424 0.899497480895872 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] 0.203846902554909 -1.37161510758635 0.326533238098897 0.441850093905423 0.624276118846958 -3.10425442136479 0.55224067667563 0.0172192848102561 1 1 FALSE FALSE FALSE TRUE Solobacterium 0.525686329370871 -1.56133922546944 0.388352846534036 0.566331364333764 1.35363068421541 -2.75693582202747 0.194668624289789 0.0140325058022998 1 1 FALSE FALSE FALSE TRUE Abiotrophia -0.420080740960866 0.434274942043844 0.402428403198663 0.578789253501024 -1.04386454241772 0.750316180573445 0.313080099343207 0.464671880714224 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 0.151508936698081 -0.675778452877632 0.245179429726632 0.376582551245002 0.617951256624624 -1.79450282718483 0.599598439145745 0.214585535165469 1 1 FALSE FALSE TRUE TRUE Tannerella -0.214956107367108 0.158122391264154 0.330367036845438 0.544928981397779 -0.65065845981382 0.29017063995855 0.522672399548473 0.774672918522169 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] -1.87192880583764 2.43086126358493 0.11619152805091 0.310682058076104 -16.1107168245299 7.82427308045409 0.000520157803682156 0.00434682305331254 0.0457738867240297 0.347745844265003 TRUE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-8] -1.64598217263297 2.29255681351723 0.142858372199442 0.307740830489658 -11.5217760589841 7.44963484328504 0.00744881984487047 0.0175461271189449 0.618252047124249 1 FALSE FALSE FALSE FALSE Pseudoleptotrichia -0.499009306509138 0.321192836794569 0.176287376733635 0.387761920414051 -2.83065818866387 0.828324855755821 0.0473134544547184 0.454047826961736 1 1 FALSE FALSE FALSE TRUE Lachnospiraceae_[G-7] 0.0531800760233233 0.0880528484248382 0.306733283332957 0.458396472284096 0.173375629294186 0.19208884393479 0.865815386251609 0.851517238968835 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-9] -0.434875533042628 0.582679043628215 0.473388251945165 0.625920759416098 -0.918644540196576 0.930915031755422 0.370428239646421 0.364215799904361 1 1 FALSE FALSE TRUE TRUE Ottowia -1.90678210840206 2.92404435180578 0.335089581038041 0.493967480385883 -5.69036525246541 5.91950779739903 0.00014017378395251 0.00010024433280603 0.0127558143396784 0.00922247861815476 TRUE TRUE FALSE FALSE Absconditabacteria_(SR1)_[G-1] 0.0200177045911366 -0.706603478261516 0.18417156283386 0.372779787208819 0.108690528999825 -1.89549836795658 0.916497995703591 0.0998648633206732 1 1 FALSE FALSE TRUE TRUE Peptidiphaga -0.723143246616226 0.806087612071276 0.560355011597502 0.77895577032234 -1.29050910877844 1.03483104276602 0.209697035375892 0.311506462149556 1 1 FALSE FALSE TRUE TRUE Scardovia 0.932459512669048 -2.30481077373488 0.212275126940317 0.359326422316277 4.39269322840268 -6.4142535327007 0.0117579062646578 0.00303583696224648 0.917116688643309 0.251974467866458 FALSE FALSE FALSE FALSE Cardiobacterium -0.746790413505128 0.931875900154969 0.463342511862202 0.711239560716341 -1.61174594255065 1.31021381771341 0.123504646101672 0.205743047545503 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-2] -0.0292895844742702 1.23950365096362 0.249777934064087 0.377909512551974 -0.117262497922476 3.27989534477027 0.910478850900679 0.0168247797133785 1 1 FALSE FALSE FALSE TRUE Cutibacterium -0.246468691481734 -0.0661358411471484 0.311168968062189 0.467370043675787 -0.792073493114121 -0.141506376033434 0.458480062319996 0.892101597231105 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-4] -0.378219052550923 1.0909364918541 0.286669947971393 0.415821737910643 -1.31935368610269 2.62356772720845 0.21962765981053 0.0276487177152878 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter -0.491973892022038 1.51042600960727 0.198392542506663 0.417880860828701 -2.47980032820797 3.61448956195778 0.0478182763763737 0.0111706670035082 1 0.837800025263112 FALSE FALSE FALSE TRUE Erysipelotrichaceae_[G-1] 0.538150061267956 -0.643322726453909 0.28882477925392 0.435922882784883 1.86324062172948 -1.47577186667527 0.111720772397013 0.190459229837887 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-5] 0.27770630267386 -1.11299558934478 0.334344226384235 0.555982571888179 0.830599964824022 -2.00185337746276 0.421192630151517 0.0666188654111049 1 1 FALSE FALSE TRUE FALSE Peptoanaerobacter -1.37783962868263 1.3566432136628 0.217168945549519 0.36831079715919 -6.34455181976493 3.68341961225871 0.000718165053249076 0.0102887970542665 0.0624803596326696 0.792237373178522 FALSE FALSE FALSE FALSE Schaalia 0.78274612243026 -1.669445184671 0.278627713014204 0.471178005228776 2.80929026751318 -3.54313054969622 0.0095002739175733 0.00158425628610001 0.750521639488291 0.139414553176801 FALSE FALSE FALSE FALSE Mycoplasma -0.402219859011059 1.67572333681959 0.101728378881087 0.282611830083966 -3.95386089344078 5.9294168128833 0.0167636478588201 0.00405446446125277 1 0.332466085822727 FALSE FALSE FALSE FALSE Mitsuokella -0.484356909388621 2.5554065058854 0.335106677751329 0.450648371731157 -1.44538125184137 5.67051090425304 0.24411127681919 0.010864224947562 1 0.82568109601471 FALSE FALSE TRUE FALSE Peptococcus 0.0743683118211377 -0.689125769676592 0.26400793173999 0.448822855247113 0.281689687620369 -1.53540703558239 0.782615617797786 0.148657242190425 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-2] 0.152111586144361 -1.54365427576409 0.327820225338419 0.444370949031296 0.46400915619935 -3.47379656372491 0.674237557997272 0.0402355260862431 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.92632610223471 -1.91953107557496 0.293393859345267 0.584149410178968 3.15727842532862 -3.28602758494076 0.00545061760785791 0.00410597902330233 0.463302496667923 0.332584300887489 FALSE FALSE FALSE FALSE Campylobacter 0.0298079999909997 -0.369531646526353 0.285953634132412 0.513924176944884 0.104240675525729 -0.719039234003547 0.917844597879739 0.479059927388965 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-1] 0.28935730601961 -0.702585280774011 0.37948584814183 0.549283452345427 0.762498278753902 -1.27909420495737 0.457586399741463 0.220297868210216 1 1 FALSE FALSE TRUE TRUE Arachnia -0.845317275751954 1.07791179976149 0.529319892015179 0.737585709027636 -1.59698754666812 1.46140548355052 0.122833002757088 0.156360600755214 1 1 FALSE FALSE TRUE TRUE Fretibacterium -0.36693285288115 0.839661806129352 0.489228887129674 0.661332252929018 -0.750022867688702 1.26965198266154 0.464843306707826 0.223553406332539 1 1 FALSE FALSE FALSE FALSE Anaeroglobus -0.518093635475716 2.27112854373312 0.235970082130427 0.386908253755481 -2.19559035110795 5.86994079782136 0.079534430155714 0.00203591262422109 1 0.177124398307235 FALSE FALSE TRUE FALSE Propionivibrio -1.02356238072642 0.832738950862253 0.0858421605149624 0.329632949957459 -11.9237723583158 2.52626125807424 7.31226762905395e-05 0.052769999758129 0.00672728621872964 1 TRUE FALSE FALSE TRUE Enterocloster 0.541719324966168 -1.26644877576284 0.124410301438585 0.294663245224716 4.35429637821098 -4.29795298968157 0.048906059564114 0.0501013230598152 1 1 FALSE FALSE FALSE TRUE Brachymonas -1.10734002032587 1.82013764082703 0.100973820117141 0.285043752139744 -10.9666051956956 6.38546758932189 0.00821258318168019 0.0236584416091459 0.673431820897776 1 FALSE FALSE FALSE FALSE Veillonella 0.81255947517076 -1.79165714428876 0.282455878095454 0.526898341049324 2.87676603032549 -3.40038486498297 0.00830074557383957 0.00235536453549497 0.673431820897776 0.200205985517073 FALSE FALSE FALSE FALSE