taxon lfc_(Intercept) lfc_GroupFemale Healthy Baseline se_(Intercept) se_GroupFemale Healthy Baseline W_(Intercept) W_GroupFemale Healthy Baseline p_(Intercept) p_GroupFemale Healthy Baseline q_(Intercept) q_GroupFemale Healthy Baseline diff_(Intercept) diff_GroupFemale Healthy Baseline passed_ss_(Intercept) passed_ss_GroupFemale Healthy Baseline Haemophilus 0.705203240166477 -1.06421853081619 0.45488542880307 0.688018985432399 1.55028760103849 -1.54678657616891 0.134724449729865 0.135564998675476 1 1 FALSE FALSE FALSE FALSE Kingella 0.27844335165842 -0.292271932290739 0.426484343838985 0.630112856448864 0.652880593815054 -0.463840610931032 0.520306470597477 0.647121944575481 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum 0.440710854527957 -0.408025091785019 0.328851237420135 0.522598381180451 1.34015264161805 -0.780762257363614 0.193285711400482 0.442904566443283 1 1 FALSE FALSE TRUE TRUE Fretibacterium -1.63313624896642 3.41859283114786 0.373440949204105 0.566045456911562 -4.37321148751103 6.03943162056324 0.00178870569321765 0.000192959427191576 0.11447716436593 0.0144719570393682 FALSE TRUE FALSE FALSE Peptostreptococcus -0.338449930821939 0.840547838488861 0.395721005677688 0.572532455004725 -0.855274109703451 1.46812260360319 0.409151462250248 0.167789077478844 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-4] -0.240063494089734 -0.0251439297000707 0.247325063833731 0.372990504178142 -0.970639571940518 -0.0674117153611552 0.403321734946292 0.950495272757324 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.333607000728575 1.29858212380447 0.546087587652742 0.717214100568399 -0.610903833508694 1.81059201537635 0.548900637964445 0.0869291552332675 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.0788951218461381 0.344897235601301 0.242202258935616 0.415980094761948 -0.325740652431779 0.829119565922198 0.747131715212161 0.414306927794832 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] -0.00945813692145522 0.176967378943275 0.273430042495761 0.425085516056518 -0.0345907012818529 0.416310065289889 0.972931603328117 0.683974325233648 1 1 FALSE FALSE TRUE TRUE Dialister -0.191459962829395 0.763305499683031 0.294457965666781 0.505584642161449 -0.650211524744613 1.50974819254752 0.524246078142826 0.149470057323864 1 1 FALSE FALSE TRUE TRUE Bergeyella 0.320490462849803 -0.349699127459381 0.305226719443195 0.468717735052412 1.05000788736468 -0.746076159077441 0.306237411651964 0.464301191264045 1 1 FALSE FALSE TRUE TRUE Leptotrichia 0.679239664006838 -0.826323515508932 0.251438988684434 0.493252117762913 2.70140946541632 -1.6752558899425 0.012738147881309 0.107428425739478 0.764288872878541 1 FALSE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-6] -0.522683428426435 -0.0314221769914748 1.93405419370046e-06 0.249007750815216 -270252.731349981 -0.126189553893816 2.35564602505439e-06 0.920087618311343 0.000164895221753807 1 TRUE FALSE FALSE TRUE Eikenella 0.734867562568714 -1.03831751187546 0.183672116675032 0.446689134960946 4.00097508468802 -2.32447451842822 0.000648203352782699 0.0302100976473655 0.0421332179308754 1 TRUE FALSE FALSE FALSE Lancefieldella 0.262302720183682 -0.139292805640546 0.355662300717084 0.556669123208299 0.737504986204128 -0.250225492726717 0.470320942453455 0.805246645610957 1 1 FALSE FALSE TRUE TRUE Treponema -0.780198243696054 1.727747516563 0.544725535648207 0.721748115668682 -1.43227771168767 2.39383723913472 0.166782340441309 0.0260883475924163 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-7] -0.411266077583647 0.82060979579304 0.326110069274214 0.462446638089655 -1.26112658372971 1.77449618659342 0.247665925700409 0.11925037516641 1 1 FALSE FALSE TRUE TRUE Selenomonas 0.241894375866595 -0.131973238454389 0.421340273250107 0.649949232125877 0.574106942117557 -0.203051610696925 0.571994164823274 0.841049222270313 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-6] -1.81759461385613 3.03059519378348 1.93405419370046e-06 0.307811650043938 -939784.738078354 9.84561563329679 1.13225233302486e-12 0.0101591332268551 8.49189249768647e-11 0.680661926199294 TRUE FALSE FALSE FALSE Ruminococcaceae_[G-1] -0.517163078747108 1.11184038741119 0.273699103293011 0.395653992014049 -1.88953150567488 2.8101331209915 0.0954947497785581 0.0228383759862613 1 1 FALSE FALSE TRUE FALSE Lautropia 0.502192489020256 -0.816088461935386 0.363214391674223 0.64271489700744 1.3826337847061 -1.2697519004697 0.180652502952464 0.217440166441077 1 1 FALSE FALSE FALSE FALSE Capnocytophaga 0.463779329384907 -0.517535872408045 0.313321392116807 0.555808377061439 1.4802032068465 -0.931140827967112 0.151827777422562 0.361053345973847 1 1 FALSE FALSE TRUE TRUE Gemella 0.144414055063908 0.0353248496703744 0.259877538442266 0.516581928009535 0.55570041154592 0.0683818921162926 0.583559393655783 0.946048174179919 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.315603218327726 0.688098703906375 0.320340442900996 0.535828994977702 -0.985211906026071 1.2841759411228 0.345694611095656 0.225468219385031 1 1 FALSE FALSE TRUE TRUE Slackia -0.753063272232987 1.88945188503686 0.0674998512936558 0.31531146634567 -11.1565175004136 5.99233483937273 3.09334662691055e-05 0.000971025569653343 0.00204160877376096 0.070884866584694 TRUE FALSE FALSE FALSE Mogibacterium -0.428256596763496 1.2172154778281 0.498221651346438 0.642897724292794 -0.859570425344095 1.89332677941436 0.401985050737955 0.0754641003950116 1 1 FALSE FALSE TRUE TRUE Parvimonas -0.497647565660633 1.28551412867007 0.387595719354948 0.604853651964184 -1.28393462778391 2.1253308539934 0.215446506368141 0.0476600371479677 1 1 FALSE FALSE TRUE FALSE Prevotella 0.360899442153471 -0.369352710982696 0.337365216985548 0.675719088999148 1.06975889624368 -0.546606891822116 0.294948117844476 0.589494692913539 1 1 FALSE FALSE TRUE TRUE Shuttleworthia 1.41279295416875 -1.93223031616706 0.0671163971199259 0.308952072272313 21.0498926461192 -6.25414259873932 1.37354976504639e-07 0.000422454792878993 1.00269132848386e-05 0.0312616546730455 TRUE TRUE FALSE FALSE Veillonellaceae_[G-1] -0.38136100971694 0.960527874166221 0.308392619594947 0.461735637794971 -1.23660874315939 2.080255010753 0.238107929831563 0.0578464336713824 1 1 FALSE FALSE TRUE TRUE Streptococcus 0.312135175357197 -0.322154447863212 0.228646024145487 0.465785412811862 1.36514586913869 -0.691637047880963 0.183475108019341 0.49507014822437 1 1 FALSE FALSE FALSE TRUE Bacteroidetes_[G-5] -0.524674593893284 1.02895629795885 1.93405419370046e-06 0.33788686172671 -271282.260653418 3.04526874084583 1.10460386481165e-16 0.0556353140377587 8.61591014553086e-15 1 TRUE FALSE FALSE TRUE Catonella -0.387621383811339 0.99470599749041 0.269507513844801 0.433218948880243 -1.43825817054791 2.29608146195235 0.169633609938531 0.0355180081942974 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-1] 0.154174792084216 0.105572536042103 0.285865878171214 0.540127243493262 0.539325620359194 0.195458639263065 0.595078972960531 0.846827907406206 1 1 FALSE FALSE TRUE TRUE Johnsonella 0.206261100631486 -0.358116493108669 0.176953475890288 0.398732464662677 1.1656233345728 -0.898137284636785 0.281943123027517 0.398949897212543 1 1 FALSE FALSE TRUE TRUE Granulicatella 0.619326717961285 -0.846755886317792 0.331782151434793 0.552384058016527 1.86666677301056 -1.53291152057914 0.0742127231369782 0.138375096882111 1 1 FALSE FALSE FALSE FALSE Rothia 0.241704382936613 -0.202007801969274 0.530466690889294 0.850634021524966 0.455644788047692 -0.237479100127134 0.652288854708629 0.814077935438067 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.159233963200402 0.111741229841991 0.511408302844263 0.683326467323324 0.311363664443463 0.163525394061926 0.75891468389881 0.871831662062814 1 1 FALSE FALSE FALSE FALSE Neisseria 1.23505817069149 -2.05925832753651 0.403247456097274 0.70347883932305 3.0627798192323 -2.92724985092389 0.00569935077815311 0.00780118937235671 0.353359748245493 0.530480877320257 FALSE FALSE TRUE TRUE Megasphaera -0.530611358095949 1.35037732803369 0.270637704705892 0.423838551369097 -1.9605965793738 3.18606536302953 0.0855790881137132 0.0128793912221565 1 0.850039820662328 FALSE FALSE TRUE FALSE Filifactor -1.89794730061645 4.14728231725203 1.93405419370046e-06 0.238156365534154 -981330.981726563 17.4141149154263 6.48730942181491e-07 0.0365175827513166 4.60598968948859e-05 1 TRUE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-3] -0.204440961358229 0.616768697241005 0.31200285419056 0.438119746855129 -0.655253497243215 1.40776283577318 0.527089942050343 0.189519257332678 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.00728445960490034 0.197885008420118 0.188253420303139 0.51592473956959 0.038694965505383 0.383554021048116 0.969418286226697 0.704312682586329 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 0.0158630414999824 0.444710965707173 0.237888361259626 0.412509030711667 0.0666827137569365 1.07806358794122 0.948698896384776 0.316747710959478 1 1 FALSE FALSE TRUE TRUE Olsenella -0.791112938670707 1.51965917717813 0.414282670553249 0.626731238375479 -1.90959698510735 2.42473820375888 0.0803774907081872 0.0320390114987702 1 1 FALSE FALSE TRUE FALSE Corynebacterium 0.515691904830981 -0.65092148815372 0.443772024658219 0.734875698055711 1.16206492562967 -0.885757264631131 0.25576568950492 0.383867583991073 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] 0.0483296842980901 -0.322751279202463 0.330852314059424 0.440475913147859 0.146076307295858 -0.732733095201331 0.888645341409377 0.491343287315465 1 1 FALSE FALSE TRUE FALSE Solobacterium -0.088790310499267 0.634091476746577 0.257743624405313 0.461255361264267 -0.344490812155417 1.37470809013163 0.735259495980724 0.189411385585382 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.213634419318442 -0.304585072938754 0.394464088094007 0.563311030538361 0.541581415815803 -0.54070496835054 0.595134334086685 0.595725252092462 1 1 FALSE FALSE TRUE TRUE Stomatobaculum 0.160497666049198 -0.0593209546302514 0.258566057739122 0.444279611099906 0.620722098842265 -0.133521667769966 0.545511776566103 0.895825645461891 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] 0.138499340958224 0.176321092746763 0.197316822826018 0.34303026023924 0.701913496145964 0.514010316826835 0.514052302592865 0.629147377984567 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.619808958764411 -0.787987229999183 0.446578753903641 0.688952332224812 1.38790516419898 -1.1437470970663 0.177917188258245 0.264008797400024 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-8] -0.226192099373347 0.376636563058871 1.93405419370046e-06 0.241477992857693 -116952.306770975 1.5597138215441 5.44341355830411e-06 0.362952097154304 0.000375595535522984 1 TRUE FALSE FALSE TRUE Pseudoleptotrichia -0.893737653652301 1.28956815421467 0.0132040979263824 0.314336448311945 -67.6863848356178 4.10250914629829 2.85439635498977e-07 0.0148225943232475 2.05516537559263e-05 0.963468631011088 TRUE FALSE FALSE FALSE Lachnospiraceae_[G-7] -0.201728188539678 0.869937068616015 0.124825393826028 0.331139317771618 -1.61608293277914 2.6271029199136 0.166998665302439 0.0466960348683774 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-9] 0.116664096949164 0.197694180460331 0.2011786196837 0.417540916739295 0.57990305894626 0.473472592827992 0.571894166532992 0.643728272465901 1 1 FALSE FALSE TRUE TRUE Ottowia -1.32991742214707 2.16645915272438 0.329388486469949 0.481057855835314 -4.03753463395084 4.50353138701481 0.00237060252076143 0.00113688491734533 0.14934795880797 0.0818557140488636 FALSE FALSE FALSE FALSE Absconditabacteria_(SR1)_[G-1] -0.0490490045489249 -0.0313519381697216 0.19241708702624 0.362049591392707 -0.254909817558126 -0.0865957010174192 0.803958512127863 0.932702285070237 1 1 FALSE FALSE TRUE TRUE Peptidiphaga 0.493359846540748 -0.688106934348814 0.478537667978637 0.707237483190182 1.03097390143752 -0.972950318250844 0.313754737941662 0.341154985948459 1 1 FALSE FALSE TRUE TRUE Scardovia 0.0921416567362913 -0.469519915015662 0.399052638645833 0.506830903623489 0.230901008571125 -0.926383753750848 0.825063815221926 0.389988205111022 1 1 FALSE FALSE FALSE FALSE Cardiobacterium 0.516581784946537 -0.710899287881766 0.236595297185855 0.559165227822492 2.1833983645953 -1.2713581827149 0.0410934855576793 0.218188565634868 1 1 FALSE FALSE FALSE TRUE Peptostreptococcaceae_[XI][G-2] -0.789218781779772 2.17385032572812 0.0884307214532764 0.26181158427274 -8.92471268818911 8.30310977937297 0.0710359497055291 0.0763049317127712 1 1 FALSE FALSE TRUE TRUE Cutibacterium -1.89511232490929 2.88839855320567 0.00582909971820724 0.303821434280617 -325.112352940179 9.50689525919979 5.71528949282662e-14 7.72213480072649e-05 4.4007729094765e-12 0.00586882244855213 TRUE TRUE FALSE FALSE Erysipelotrichaceae_[G-1] 1.34384328991832 -0.899177066949574 1.93405419370046e-06 0.285411269658896 694832.282515892 -3.15046097522431 2.07128578231222e-12 0.0877002674357241 1.53275147891104e-10 1 TRUE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-5] -3.64044436266452 4.87240780817046 0.0149508098179183 0.412749331785051 -243.494794395786 11.8047624380114 3.23780227973256e-13 2.2329397317391e-05 2.46072973259675e-11 0.0017416929907565 TRUE TRUE FALSE FALSE Peptoanaerobacter -0.545868096530839 0.502362657840323 0.260721558169582 0.391465573207264 -2.09368224232454 1.28328694072504 0.0745635286543562 0.240240378438547 1 1 FALSE FALSE TRUE TRUE Propionibacterium 0.981130505751249 -1.3662578807893 0.398180004590274 0.528466583601911 2.46403760721443 -2.58532501994201 0.0905422215946703 0.081403063988426 1 1 FALSE FALSE TRUE TRUE Tannerella -0.577042341220515 1.55222040052777 0.309593892159294 0.518989405160195 -1.86386862220012 2.99085180755984 0.0778687665319439 0.00751230909988543 1 0.518349327892094 FALSE FALSE TRUE FALSE Schaalia 0.143586787370635 0.0149385293927814 0.276750956356581 0.456575008279647 0.518830320447492 0.0327186751834469 0.608441634081537 0.974158756750427 1 1 FALSE FALSE TRUE TRUE Peptococcus -0.457696950027327 0.97778002216966 0.253968384662628 0.432241501655663 -1.80218081331396 2.26211508710838 0.101690311110049 0.04719863624349 1 1 FALSE FALSE TRUE FALSE Alloprevotella -0.192810457132735 0.564811146145682 0.285949774666938 0.564903632666888 -0.674280850045473 0.999836279117609 0.511945459513039 0.335637563588485 1 1 FALSE FALSE TRUE TRUE Campylobacter -0.0726747021203488 0.412317782201067 0.250204188676499 0.476158277547389 -0.290461572625043 0.865925894063726 0.773958229520326 0.395105005908831 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-1] -1.21227841946903 2.53182236399618 0.180566044924697 0.404995348264788 -6.71376736403902 6.25148504752913 2.1530189881586e-05 4.24495005217471e-05 0.00144252272206626 0.00326861154017453 TRUE TRUE FALSE FALSE Arachnia 0.103965927231171 0.0358411123784537 0.539057217910798 0.736422146827785 0.192866218606825 0.0486692483826608 0.848686547349799 0.961585645032131 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.930733931215326 2.70882711634234 0.132079541593033 0.309172873812956 -7.0467683336086 8.76152905309903 0.0058732524425791 0.00313133861897663 0.358268398997325 0.222325041947341 FALSE FALSE FALSE FALSE Propionivibrio 0.0641119024697477 -0.112719242912776 0.171916591799222 0.346403533621478 0.372924461791465 -0.325398652070181 0.724491445076386 0.758054990969538 1 1 FALSE FALSE TRUE TRUE Veillonella 0.362974935056563 -0.437507105886974 0.393756414630295 0.587565376299314 0.921826087321948 -0.744610086868192 0.365430382620954 0.463450043845696 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-4] -0.752564892934654 1.80303266927056 0.0148325353982276 0.255921615156799 -50.7374412215852 7.04525355611667 1.68607954178263e-05 0.00587686825291063 0.00114653408841219 0.411380777703744 TRUE FALSE FALSE FALSE