taxon lfc_(Intercept) lfc_GroupFemale Diseased Baseline se_(Intercept) se_GroupFemale Diseased Baseline W_(Intercept) W_GroupFemale Diseased Baseline p_(Intercept) p_GroupFemale Diseased Baseline q_(Intercept) q_GroupFemale Diseased Baseline diff_(Intercept) diff_GroupFemale Diseased Baseline passed_ss_(Intercept) passed_ss_GroupFemale Diseased Baseline Haemophilus 0.484378497500756 -0.765406808884367 0.568728275745269 0.890822096622162 0.851687032557016 -0.859213990971544 0.40316886878509 0.399089367149141 1 1 FALSE FALSE TRUE TRUE Fretibacterium 0.712233670654763 -1.06561544286244 0.353222290020997 0.669772686493028 2.0163893694603 -1.59101059859886 0.0561295667025589 0.125875422672114 1 1 FALSE FALSE TRUE TRUE Kingella 0.390123335274144 -0.403487642380441 0.302685192947382 0.7260223810024 1.2888748586455 -0.555750969857645 0.209727189267287 0.583525368539921 1 1 FALSE FALSE TRUE TRUE Peptostreptococcus -0.755945669722725 1.95751973944584 0.141688782404339 0.526518813591488 -5.33525418805191 3.71785335854043 0.000105224830455038 0.00229477349211404 0.00999635889322857 0.204234840798149 TRUE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-4] 0.333872282663669 -0.438717752440106 0.11534602409394 0.323776737062746 2.89452788066415 -1.35500084539763 0.0627811013622916 0.268420586962806 1 1 FALSE FALSE TRUE TRUE Gemella 0.00484188636367868 0.449703153681573 0.35052479540236 0.578887711744719 0.0138132492399597 0.776840040922971 0.989073566031655 0.443543895141064 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.442392390744268 1.39401132388058 0.272376567381867 0.60516384029697 -1.62419401564762 2.30352712944069 0.11999081098034 0.0321117427519458 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] -0.0383019098840664 0.972001353032695 0.288881189337154 0.481294852608205 -0.132587067963654 2.01955484827083 0.895844852008642 0.0570322756926857 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] 0.136466981012028 0.0434826078445477 0.292220960815998 0.479655179958582 0.46699928927397 0.0906538898387427 0.651599477567234 0.929753146165776 1 1 FALSE FALSE TRUE TRUE Desulfobulbus 0.344337146987171 -0.498809898364408 0.29120500569393 0.47009245881192 1.1824561400194 -1.06108891775262 0.270974543044935 0.319629971383006 1 1 FALSE FALSE TRUE TRUE Dialister -0.875855213305368 2.44540052164108 0.263524976784619 0.523877000637409 -3.32361366270497 4.66789059009219 0.00295710318655598 0.000106505781596855 0.245439564484147 0.0102245550332981 FALSE TRUE FALSE TRUE Bergeyella 0.321911189915969 -0.139970108827602 0.349033281152652 0.510243118900325 0.922293681716785 -0.274320424211237 0.36638013579279 0.786397766786133 1 1 FALSE FALSE TRUE TRUE Butyrivibrio 1.20060893871139 -2.3459425578127 0.115388194402754 0.324379818407888 10.4049547263106 -7.23208542790049 0.00189449817369177 0.00545214318176598 0.161534147927347 0.457980027268343 FALSE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-6] -0.0979698413491273 0.615289703158652 0.137603344563352 0.381534983274004 -0.711972820573578 1.61266916569161 0.49951606213386 0.150851309867896 1 1 FALSE FALSE TRUE TRUE Eikenella 0.371928617395516 -0.393037877643554 0.250955092328517 0.484255666744825 1.48205248175891 -0.811632996027823 0.150822597326692 0.424662944795324 1 1 FALSE FALSE TRUE TRUE Lancefieldella -1.01325742131521 2.39954249145177 0.263384023237058 0.603292835831419 -3.84707245664338 3.97740922639148 0.00142408759397494 0.00108223605367994 0.125319708269795 0.0974012448311943 FALSE FALSE TRUE TRUE Eggerthia -1.39427265997754 2.74671121485954 NA 0.41110297131519 NA 6.6813217284038 1 0.0216757140165082 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-7] 0.04643136358105 0.645283407709695 0.256919598312504 0.469900542700202 0.180723323117504 1.37323401246078 0.858721749976404 0.187521843544551 1 1 FALSE FALSE TRUE TRUE Treponema -0.173473930267217 0.937185087635985 0.465775886582759 0.637755041550541 -0.372440770903656 1.46950635679407 0.712182968606778 0.152105368093908 1 1 FALSE FALSE TRUE TRUE Schaalia -0.265154168221264 1.23589509547528 0.34619381450435 0.519612093374288 -0.765912495001934 2.37849563402104 0.450137238430583 0.0244433386450823 1 1 FALSE FALSE TRUE FALSE Bacteroidetes_[G-3] 0.694553264518423 -1.94564921604008 0.160046597396829 0.379341432816039 4.33969403795762 -5.12901847181987 0.00187830404566682 0.000620396234659708 0.161534147927347 0.0570764535886931 FALSE FALSE FALSE FALSE Selenomonas -0.640429958605564 2.45794676931811 0.344685553383271 0.507297688481022 -1.85801218623585 4.84517636316819 0.0733466115482908 3.90039414126471e-05 1 0.00382238625843941 FALSE TRUE TRUE FALSE Peptostreptococcaceae_[XI][G-6] 0.309225225941402 -0.642451483074516 0.219767414862598 0.521794248696635 1.40705675650202 -1.23123527075905 0.179792551934556 0.23719093374249 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.655913736260526 1.62634154872288 0.199339772316024 0.516908131581457 -3.29043084899621 3.14628741425902 0.0053634380708132 0.00714416468920061 0.423711607594243 0.592965669203651 FALSE FALSE FALSE TRUE Lautropia 0.948744937366179 -1.59401099760214 0.314575055853863 0.744314494369593 3.01595730402388 -2.14158263699031 0.00682609542848469 0.0447226462606413 0.518783252564836 1 FALSE FALSE FALSE FALSE Lachnoanaerobaculum -0.175120907032277 0.89314815928894 0.338927726179687 0.531302711778316 -0.516691003731676 1.68105326678928 0.609912777857756 0.105205876945448 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] 0.103510859077557 -0.0680851543365411 0.284619479860891 0.504127472367659 0.363681569259239 -0.135055433533062 0.721170707017962 0.894363675497065 1 1 FALSE FALSE TRUE TRUE Slackia -0.170552563292438 0.909867171814492 0.202893856931786 0.502474152649636 -0.840599936693887 1.81077408064992 0.415765780954888 0.0933375720213678 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.802021546030661 1.92208171661207 0.275338632316269 0.601932400962902 -2.91285512419273 3.19318533698692 0.00860342082776607 0.00456667772524394 0.645256562082455 0.388167606645735 FALSE FALSE FALSE TRUE Parvimonas -0.386820198443373 1.50864284555072 0.465597833593917 0.700210888472334 -0.830803260954922 2.1545549639226 0.413113342079831 0.0399469374807099 1 1 FALSE FALSE TRUE TRUE Bacteroidaceae_[G-1] 0.78801069352906 -1.1867246509102 0.138500048992908 0.331874694341219 5.68960588287886 -3.5758214505203 0.00471288061535868 0.0232543518995187 0.377030449228695 1 FALSE FALSE FALSE FALSE Neisseria 0.705180842880335 -1.12842290780795 0.502178319813716 0.879943705252336 1.40424390113441 -1.28238079444453 0.171645546478289 0.210610291620268 1 1 FALSE FALSE TRUE TRUE Prevotella -0.668217130603153 2.25650028853182 0.349622736482949 0.579316354505891 -1.91125193208292 3.89510890031135 0.0655680209557069 0.000509007869594034 1 0.0478467397418392 FALSE TRUE TRUE TRUE Centipeda 0.619029364412856 -0.175203107968361 0.128507957838727 0.518588644501276 4.81705082567506 -0.337846016927063 0.000538418408731331 0.741838787640162 0.0500729120120138 1 FALSE FALSE FALSE FALSE Lachnospiraceae_[G-2] -1.00979556173187 2.15312372608931 0.240327642041859 0.543736744655129 -4.20174538872222 3.95986430428745 0.00567481650480034 0.0074529137707499 0.442635687374426 0.603686015430742 FALSE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-1] -0.275371618141392 1.48859541516898 0.307330035560307 0.450699448094986 -0.896012710372905 3.3028560861589 0.378467213357374 0.00278859645612826 1 0.245396488139287 FALSE FALSE TRUE FALSE Shuttleworthia -0.747090249874026 1.58759734735286 0.0911785618670477 0.443682049252025 -8.19370512734559 3.5782320921689 7.82117176758768e-05 0.00899738505046136 0.00750832489688417 0.701796033935986 TRUE FALSE TRUE TRUE Leptotrichia 0.0223145732029122 0.408511274255237 0.286693302052735 0.637714293973795 0.0778343025216808 0.640586667282738 0.93851341876567 0.526999524165148 1 1 FALSE FALSE TRUE TRUE Anaerolineae_[G-1] -0.183061573318512 -0.140722226548505 0.240308443440317 0.448347549936593 -0.761777533480541 -0.313868619485947 0.468053344185229 0.761649044351024 1 1 FALSE FALSE TRUE TRUE Veillonellaceae_[G-1] -0.30492414287003 1.1030945075406 0.185723081628906 0.585102961115032 -1.64182146987685 1.88529982045969 0.117075678371941 0.074776411332662 1 1 FALSE FALSE TRUE FALSE Bacteroidetes_[G-5] 0.849743722808782 -1.0349578906444 0.172383319170306 0.397464666782979 4.92938485520911 -2.60389910635628 0.00115032985424795 0.03142680740714 0.102379357028067 1 FALSE FALSE FALSE FALSE Catonella -0.209329379173354 1.58218179919833 0.246396904921833 0.542844235586327 -0.849561723349412 2.91461471906285 0.403964177185579 0.00759454817051277 1 0.607563853641022 FALSE FALSE TRUE FALSE Johnsonella 0.740393799750887 -1.05225182359918 0.321891025621768 0.485459966974757 2.30013806169568 -2.16753572937538 0.0373404980853371 0.0479240491968453 1 1 FALSE FALSE FALSE FALSE Granulicatella 0.481583856429892 -0.635875246428501 0.394600751534777 0.663732075596515 1.22043319622885 -0.958030009107246 0.232131971878247 0.345967046177919 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.158569042810201 0.0517371594295352 0.304773075447699 0.635323272193054 0.520285601269962 0.081434384185149 0.606683218178053 0.935637385484438 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.102368275224493 0.166535461058892 0.355747990195691 0.691051833312782 0.287755034591151 0.24098837891877 0.776004476840925 0.81161099928132 1 1 FALSE FALSE TRUE TRUE Megasphaera 1.06608947942475 -0.797653933567066 0.22688282594992 0.471530736179346 4.6988549043376 -1.69162659475856 0.00154374465534074 0.129178941692244 0.134305785014644 1 FALSE FALSE FALSE TRUE Streptococcus 0.0507791563189606 0.339176856739509 0.298502751214773 0.486822364824886 0.170112858633001 0.696715848010627 0.86606341083841 0.491344353097001 1 1 FALSE FALSE TRUE TRUE Filifactor 0.627230930972886 -1.09763184754725 0.279339366725233 0.522758304127242 2.24540829431267 -2.09969280044202 0.0402412880640191 0.0530859300526915 1 1 FALSE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-3] 0.0481354974868998 0.401862951046275 0.272349179647142 0.46555759808827 0.17674184864175 0.863186322587051 0.863624517407372 0.410447293141882 1 1 FALSE FALSE TRUE TRUE Fusobacterium -0.0287498281223939 0.482234296333157 0.210253402435257 0.375426556218231 -0.136738943529091 1.28449702970091 0.892182033265321 0.209134576752721 1 1 FALSE FALSE TRUE TRUE Cryptobacterium -0.439163906725436 1.3059946300808 0.0990208387517994 0.478238859517033 -4.43506551006119 2.7308417208081 0.00302567657955049 0.0293030469956238 0.24810547952314 1 FALSE FALSE FALSE TRUE Stomatobaculum -0.638537091802063 1.64282887705612 0.286340472198598 0.705154284127137 -2.22999245233901 2.32974387880188 0.0367915173246991 0.0298770489159416 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-5] 1.23238528782916 -1.34442216236425 0.260216301201241 0.474647088890664 4.7360034023237 -2.83246688714853 0.000796909316211924 0.0177765449172054 0.0717218384590731 1 FALSE FALSE FALSE FALSE Olsenella -0.384135467342665 1.91354350796172 0.32619164358212 0.580751754021879 -1.17763736410972 3.29494227905445 0.252115543712352 0.00345032929183569 1 0.300178648389705 FALSE FALSE TRUE FALSE Corynebacterium 0.465540713987115 -0.465033825090796 0.301606567845851 0.61659218736786 1.54353639349475 -0.754199995747524 0.134786013477306 0.457505974250726 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] -0.559051246047924 1.22972510207876 0.102996078522404 0.450465387808236 -5.42788865428814 2.72989920060685 0.000624906128003504 0.0258498284574927 0.0574913637763224 1 FALSE FALSE FALSE TRUE Solobacterium -1.08401201223808 2.32316525708242 0.175756558157419 0.512357752831749 -6.16769026204514 4.53426388932834 1.03239447555196e-05 0.000293455023246978 0.00101174658604093 0.0278782272084629 TRUE TRUE TRUE TRUE Abiotrophia 0.484433010736727 -0.565769554865175 0.38932902410259 0.631807883468941 1.24427664198259 -0.89547720069401 0.229357127017844 0.382351202005152 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 0.533180931018169 -0.219929788490093 NA 0.39395366919683 NA -0.558263079357716 1 0.632821581469886 1 1 FALSE FALSE TRUE FALSE Tannerella -0.0160834393908325 0.68660215045039 0.386129863696275 0.580261177061215 -0.0416529279472762 1.18326398110545 0.967106262541604 0.247834887629836 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] 0.432379149768647 -0.699115728203874 0.114899435756429 0.330571124556544 3.76310942627458 -2.11487234144158 0.0328201002340177 0.124788229805737 1 1 FALSE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-8] 0.508984683697021 -0.669786734980877 0.108995123053277 0.338387786286106 4.66979319293241 -1.97934666121364 0.0185419618340742 0.142147755845812 1 1 FALSE FALSE FALSE TRUE Peptostreptococcaceae_[XI][G-3] -0.0779701933179394 -1.6951513584917 0.156562529908321 0.340596382421202 -0.498013115677145 -4.97700928718429 0.644611305057456 0.00761348465963813 1 0.607563853641022 FALSE FALSE TRUE FALSE Peptoniphilaceae_[G-1] -0.249563117195488 1.20500725335802 0.124547118439258 0.327120135738382 -2.00376468217689 3.68368413224717 0.13881875555101 0.034668314958443 1 1 FALSE FALSE TRUE FALSE Pseudoleptotrichia 0.562115452125813 -0.0129268781426665 0.240316927300595 0.415634594009828 2.33905891873652 -0.031101545273108 0.0579184409001392 0.976197315559346 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-7] -0.649607838884273 1.48898491446852 0.181543071492264 0.458478512273014 -3.57825739944008 3.2476656475928 0.00594693371837505 0.010034780177818 0.457913896314879 0.772678073691985 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-9] 0.529348099751345 -0.886957352172707 0.242336805393607 0.602727814527868 2.18434875747236 -1.47157196132965 0.0389390893773974 0.154128565608232 1 1 FALSE FALSE FALSE TRUE Ottowia 0.597561471494584 -0.875462356940735 0.254204921427008 0.508393251129393 2.350707720921 -1.72201805392951 0.0339176474738145 0.107075345186973 1 1 FALSE FALSE FALSE TRUE Absconditabacteria_(SR1)_[G-1] 0.0181443212929876 0.0638200713779759 0.108399144666635 0.355137788767081 0.167384358509356 0.179705098687295 0.872566684028263 0.863299484859968 1 1 FALSE FALSE TRUE TRUE Peptidiphaga 0.88347167972686 -1.47850076427348 0.394466402362609 0.746249194930587 2.23966267959809 -1.98124269254455 0.0342468576199162 0.0586643574989747 1 1 FALSE FALSE FALSE TRUE Scardovia -1.75961271998634 4.50455346765509 0.155205663265795 0.387970585219883 -11.3372971253822 11.6105540967806 2.81971434846664e-05 2.45762016912191e-05 0.00273512291801264 0.00243304396743069 TRUE TRUE FALSE FALSE Cardiobacterium 0.58306020950444 -0.64736215910676 0.307199133636958 0.625068655906485 1.89798780550432 -1.0356656872643 0.0703187055560173 0.31112507426445 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-2] -0.117017943269302 0.563741539488716 0.147678164245683 0.403163950236847 -0.792384871974887 1.39829352092997 0.444889530729893 0.189578720069191 1 1 FALSE FALSE TRUE TRUE Cutibacterium -1.62682096935567 2.20068726659112 0.208033534236223 0.475344867852026 -7.81999390304263 4.62966451396755 0.000230801298003934 0.00357895329144436 0.0216953220123698 0.307789983064215 TRUE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-4] 0.307337431434906 -0.44887953123962 0.271290913751123 0.48330342438866 1.13287034639447 -0.928773744583782 0.272994238549343 0.366007174648687 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 0.265449055950456 -0.0380769977122972 0.137107787502506 0.369907422473565 1.93606111502313 -0.102936560336305 0.0888852140959981 0.920546886902897 1 1 FALSE FALSE TRUE FALSE Erysipelotrichaceae_[G-1] -1.35774090787657 2.73918985228237 0.0907005821641276 0.421670418440753 -14.9694839380376 6.4960446180012 5.59666934191501e-06 0.000633282041722656 0.000554070264849586 0.0576286657967617 TRUE FALSE FALSE TRUE Rothia 0.839355848030731 -1.81332615411383 0.468870218891647 0.705591571170374 1.79016669050738 -2.56993738049626 0.0838740604889705 0.0155749671804011 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-5] -0.560032512320737 1.51350771590614 0.370261191972642 0.578145299481825 -1.51253365046725 2.61786737220325 0.151179432432834 0.019396213354018 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter 0.181562988392174 0.0236792374104414 0.206532230574227 0.413290666587906 0.879102442690761 0.0572943918766306 0.404976374893239 0.955715884543738 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.0253005020792299 0.542055945801352 0.250858361045345 0.643927302675729 -0.100855725811972 0.841796804622094 0.920336025077039 0.406562355428568 1 1 FALSE FALSE TRUE TRUE Mycoplasma 0.186824442908642 -0.498323913949749 0.184593321275257 0.352328476431391 1.01208668665785 -1.41437308444975 0.337930978881367 0.190901730723912 1 1 FALSE FALSE TRUE TRUE Peptococcus -0.0203539373517917 0.662904761225612 0.256261678900863 0.459195879607778 -0.0794263794691902 1.44362088307898 0.937569858438112 0.166025281736121 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-2] 0.0208649843210441 0.3961941337384 0.161290220030183 0.470947486156051 0.129362985041124 0.841270301647005 0.903314541500827 0.447549476925043 1 1 FALSE FALSE TRUE TRUE Capnocytophaga 0.303104954360412 -0.112096116558102 0.336745512022933 0.522401544455245 0.900100947268958 -0.214578455496327 0.375743161579897 0.831651125727548 1 1 FALSE FALSE TRUE TRUE Propionibacteriaceae_[G-1] 0.851451984893292 -1.85134440157489 0.215778236735197 0.378354776632572 3.94595858125485 -4.89314399054825 0.0586321527113371 0.0393192560129957 1 1 FALSE FALSE TRUE FALSE Alloprevotella -0.932612741853259 2.67731408823614 0.378438988705679 0.5550981339792 -2.46436749300843 4.82313653091195 0.0216242257671676 7.23641727082824e-05 1 0.0070193247527034 FALSE TRUE FALSE FALSE Campylobacter 0.131069615307063 0.454017730027461 0.230961149927863 0.451460644465617 0.567496374814555 1.00566402762498 0.575244927751341 0.323845456626383 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-1] -1.13327841165455 2.40778281978989 0.261743303377853 0.544354061289371 -4.3297322110226 4.42319253407747 0.000692569965291973 0.000578427626207109 0.0630238668415695 0.0537937692372611 FALSE FALSE FALSE TRUE Arachnia 0.455194961428845 -0.661022863274169 0.403420051178293 0.725623844259635 1.12833995261101 -0.910971805162523 0.268751982280758 0.370086548656605 1 1 FALSE FALSE TRUE TRUE Anaeroglobus 0.882977422626776 -1.47182110552919 0.23574329692061 0.438227384777656 3.74550383472464 -3.3585785750837 0.00381188648950131 0.00725967770084973 0.308762805649606 0.595293571469678 FALSE FALSE FALSE FALSE Sneathia 0.13452269274768 0.359698231391678 0.188927674779792 0.368165600983444 0.712032754886098 0.977001193025236 0.527822661409365 0.400621919435265 1 1 FALSE FALSE TRUE TRUE Lacrimispora 0.496142184728184 -0.14333315509575 0.113223730292576 0.330573948975549 4.38196289281522 -0.433588779575466 0.0220035976664324 0.693873788246925 1 1 FALSE FALSE FALSE TRUE Propionivibrio 0.126731282706354 0.0690122886512984 0.162218419820599 0.33962197320223 0.781238547672386 0.203203249779733 0.460263024956119 0.844756765601605 1 1 FALSE FALSE TRUE TRUE Schnuerera 0.331444648083358 -0.939679864084492 0.158777515908961 0.341760516686939 2.08747848324696 -2.74952728066379 0.105129936621018 0.0513993944505269 1 1 FALSE FALSE TRUE TRUE Enterocloster 0.732573224928308 -1.0982180767477 0.102311290968992 0.327957363071289 7.16023830791397 -3.34866113833515 0.00201362241301067 0.0286044154083831 0.169144282692896 1 FALSE FALSE FALSE FALSE Brachymonas 0.348203628032064 -1.1828404884074 0.289145111029419 0.427320207494409 1.20425217217882 -2.76804248351133 0.267626455894309 0.0277722942291488 1 1 FALSE FALSE TRUE FALSE Veillonella -0.284273067027863 1.35570812342595 0.422803887051938 0.579964350553682 -0.672352066131651 2.33757147681866 0.50687044944358 0.026784675952878 1 1 FALSE FALSE TRUE FALSE