taxon lfc_(Intercept) lfc_GroupFemale Healthy Baseline se_(Intercept) se_GroupFemale Healthy Baseline W_(Intercept) W_GroupFemale Healthy Baseline p_(Intercept) p_GroupFemale Healthy Baseline q_(Intercept) q_GroupFemale Healthy Baseline diff_(Intercept) diff_GroupFemale Healthy Baseline passed_ss_(Intercept) passed_ss_GroupFemale Healthy Baseline Haemophilus -0.131891341047993 0.563514797330952 0.329822491204943 0.579828745811031 -0.399885831212279 0.971864195078394 0.692274968677231 0.339439501434262 1 1 FALSE FALSE TRUE TRUE Fretibacterium 0.0254042196110203 0.787134241907074 0.294289241834823 0.484048559947134 0.0863239833458779 1.62614726504515 0.932350642532966 0.12473832340698 1 1 FALSE FALSE TRUE TRUE Peptostreptococcus 0.21436670201879 -0.132130695007626 0.321558098439756 0.490810606759614 0.666649986608725 -0.269209127080539 0.514494791871122 0.791209514813237 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-4] 0.240947460661713 -0.780778977616607 0.18787146204266 0.300800791623017 1.28251229879183 -2.59566796152295 0.246979778779611 0.0408994199748263 1 1 FALSE FALSE TRUE FALSE Gemella 0.206137499192356 -0.190179660936922 0.359801378586555 0.552863985071794 0.572920259511364 -0.343989961495186 0.570702897482069 0.733104048208845 1 1 FALSE FALSE TRUE TRUE Oribacterium 0.103184999226239 0.403607516150083 0.262179937647358 0.484836297617195 0.393565580006455 0.832461426946943 0.697376487516911 0.413355876956616 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.121388162603971 0.444012230173221 0.178234998165696 0.351385114328504 -0.681056828643288 1.26360569092896 0.500448065936934 0.214967331648084 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] 0.446894969635952 -1.22456313018565 0.283050038359373 0.402488830494101 1.57885500467078 -3.04247729976098 0.1286410233973 0.00597524023458152 1 0.47204397853194 FALSE FALSE FALSE TRUE Lachnospiraceae_[G-8] 0.321112749315971 -0.0491312727617563 0.29068137885828 0.410657550961935 1.10468978294109 -0.119640495217171 0.305812718790952 0.908129259616084 1 1 FALSE FALSE TRUE TRUE Desulfobulbus -0.685972089123583 1.62988783916696 0.123520652006004 0.320295846558427 -5.55350119986609 5.0886948946734 0.00514504393644698 0.00703786285238763 0.4270386467251 0.541915439633847 FALSE FALSE FALSE FALSE Dialister 0.104502195897673 0.205738758262308 0.33707615488973 0.506977784029884 0.310025477571558 0.405814149541078 0.759012974848629 0.688199616268034 1 1 FALSE FALSE FALSE FALSE Bergeyella 0.191370059765215 -0.197393299445238 0.258600981953039 0.408756587302072 0.740020622968738 -0.482911604551986 0.466180721109578 0.633360539013285 1 1 FALSE FALSE TRUE TRUE Butyrivibrio 0.610461754927286 -1.41050968942027 0.250320542535608 0.345950597321678 2.43872016552715 -4.07719975146833 0.0926059340613528 0.0266384539103411 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-6] -0.162730203678819 0.484217219184099 0.211701640309955 0.319532245000391 -0.768677103496053 1.51539391332323 0.461778549840907 0.163975927108145 1 1 FALSE FALSE TRUE FALSE Eikenella 0.571830302126994 -1.14512074201883 0.256383449790272 0.461255556267562 2.23037135429282 -2.48261668929269 0.0336235414152117 0.0190751634146477 1 1 FALSE FALSE TRUE TRUE Lancefieldella 0.192132000714719 -0.0641456136068142 0.363866393519043 0.535559859511884 0.52802898024344 -0.119773004767903 0.602537060466511 0.905703045317238 1 1 FALSE FALSE TRUE TRUE Treponema 0.421016716418677 -0.693707524448475 0.237970608466537 0.480133031913232 1.76919628491802 -1.44482357667456 0.0870275703710556 0.158872257622806 1 1 FALSE FALSE FALSE FALSE Eggerthia 0.422639012932916 0.173512312521336 0.250271840294222 0.37375593875493 1.68871980337883 0.464239613420853 0.233332083668459 0.688107800219535 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-7] 0.0959910386064236 -0.0318405087725786 0.263209887554796 0.382172659648234 0.364693893144267 -0.0833144600188977 0.719837027934461 0.93457469242993 1 1 FALSE FALSE FALSE FALSE Prevotella 0.937005276840911 -1.84616962486558 0.172959413364066 0.585840487435935 5.41748644156528 -3.15131791752011 5.89566970473586e-06 0.00351634533960367 0.000507027594607284 0.284823972507897 TRUE FALSE TRUE TRUE Schaalia 0.658728293777776 -1.1464970471452 0.306382205918728 0.450060057938068 2.15002138196143 -2.54743123039585 0.0392140713422746 0.0158581394280403 1 1 FALSE FALSE FALSE FALSE Selenomonas 0.966156132812032 -1.95496853362826 0.1974811217371 0.495551053722292 4.89239743178207 -3.94503960579575 2.92304650868139e-05 0.000425501023175903 0.00248458953237918 0.0365930879931276 TRUE TRUE TRUE TRUE Peptostreptococcaceae_[XI][G-6] 0.0136538751062132 0.879366898495775 0.248942452235212 0.388009985757569 0.0548475158962136 2.26635120428372 0.958890123211228 0.0860739384458996 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.098484338650095 0.730909113175643 0.401327640412928 0.474517879590318 -0.24539635134217 1.54031943708145 0.809269419699261 0.143025250575527 1 1 FALSE FALSE FALSE FALSE Lautropia 0.33225483540269 -0.636778074213204 0.404072295529724 0.643367702507305 0.822265815000052 -0.989757601650781 0.418128366428266 0.331080158890399 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum 0.786459644082871 -1.47185189559143 0.341333380386134 0.503066615738456 2.30408067090652 -2.92575943134466 0.0280840297035988 0.00637764302894961 1 0.497456156258069 FALSE FALSE TRUE TRUE Capnocytophaga 0.454793901284511 -0.753157173604403 0.239607441447393 0.489196106321314 1.89807920212012 -1.53958129239425 0.0667373861902511 0.133493703787886 1 1 FALSE FALSE FALSE FALSE Bacteroidales_[G-2] 0.496643165650305 -1.02195012999202 0.27921297568404 0.483127273053403 1.77872523450454 -2.11528139062243 0.0912902334654955 0.0478422066781418 1 1 FALSE FALSE TRUE TRUE Slackia -0.108460252924894 1.38102596386015 0.162281001492455 0.332990505340162 -0.668348432209649 4.14734336779178 0.515603305310558 0.00114690270905647 1 0.0963398275607438 FALSE FALSE TRUE FALSE Mogibacterium 0.0863355836920236 0.113567589803792 0.266953693713947 0.437094011184754 0.323410335668688 0.259824172598393 0.749438635600988 0.797415499690995 1 1 FALSE FALSE TRUE TRUE Parvimonas 0.24486906295412 -0.193275975832003 0.466198117752717 0.634659206981596 0.525246785925473 -0.304535053940544 0.603862483132511 0.763144564832717 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] 0.539792020474213 -0.895674874559808 0.257425969524376 0.500170126516962 2.09688253858591 -1.79074044425049 0.0445377081302843 0.0834313999303401 1 1 FALSE FALSE FALSE TRUE Shuttleworthia -0.157956726079757 0.928013887777128 0.175610197881485 0.33419650790199 -0.899473538469321 2.77685094198916 0.383611034629857 0.0148409933600627 1 1 FALSE FALSE TRUE FALSE Veillonellaceae_[G-1] 0.159093453709624 0.156312857650584 0.222315124573543 0.371556738822497 0.715621368608211 0.420697140754213 0.481752067905057 0.678057376016498 1 1 FALSE FALSE TRUE FALSE Leptotrichia 0.666018097249615 -1.23193201779197 0.283533607842346 0.486309323358155 2.34899172030408 -2.53322722518459 0.0251626240325614 0.0164008257355728 1 1 FALSE FALSE TRUE TRUE Streptococcus -0.0267355425084521 0.243571387618003 0.254820226244096 0.456055870971129 -0.104919232285909 0.534082341927405 0.917056423361915 0.596759643765744 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.716276692491341 -0.949830460840971 0.184194874355267 0.37309361570491 3.88868960115481 -2.54582340961904 0.0080889769740785 0.0437361328476108 0.663296111874437 1 FALSE FALSE FALSE FALSE Catonella 0.33949266875739 -0.544879187621213 0.210165774495611 0.366382668788198 1.61535658968335 -1.48718603263465 0.119869522375374 0.15054752988918 1 1 FALSE FALSE TRUE TRUE Peptidiphaga 0.0743252366326163 -0.0988886132326132 0.454119573619588 0.66245770990528 0.163668868179811 -0.14927536015356 0.871210821686467 0.882445785299377 1 1 FALSE FALSE TRUE TRUE Johnsonella 0.545587666213964 -1.18653438950699 0.247914970788015 0.414934608445157 2.20070480003598 -2.85956959327439 0.0450407511678456 0.0126096127347957 1 0.95833056784447 FALSE FALSE FALSE FALSE Granulicatella 0.149940232137795 -0.0406048533990357 0.285664459065258 0.497185159548178 0.524882348432231 -0.0816694799095286 0.60339884005582 0.935434579087855 1 1 FALSE FALSE TRUE TRUE Rothia -0.741900096354731 1.75803750164542 0.372181008946661 0.731263531215545 -1.99338515002268 2.40410936222009 0.0542924656949766 0.0218082365693391 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.400665957820993 -0.593702970745923 0.344600300992016 0.529023240033867 1.16269764323356 -1.12226255071122 0.256874559610414 0.273330457398662 1 1 FALSE FALSE TRUE FALSE Neisseria 0.760248761730051 -1.37834480206518 0.298717355764378 0.621203181552324 2.54504382507228 -2.21883088013303 0.0172039195969303 0.0354354458911896 1 1 FALSE FALSE FALSE FALSE Megasphaera -0.0884971148497353 0.673669746995982 0.279936196452452 0.403188913482957 -0.316133161667669 1.67085384659134 0.757819123139589 0.122925750553609 1 1 FALSE FALSE TRUE TRUE Filifactor 0.310339094742491 0.0621020036111077 0.166030056687544 0.284341591204082 1.86917417806179 0.21840633073807 0.134959969380509 0.837802980673939 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-3] 0.273497756344486 -0.290047290624858 0.281579609791558 0.384425481949161 0.971298158083767 -0.75449548545592 0.349125946822446 0.464000885870635 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.504739378225287 -0.881904915112267 0.209026437016434 0.504144615707792 2.41471550407571 -1.7493093997922 0.0212758417622573 0.0892605459745822 1 1 FALSE FALSE TRUE FALSE Cryptobacterium -0.0364347586403909 1.06259872999937 0.253010935457573 0.398906630937098 -0.144004679380748 2.6637780562914 0.889554898363038 0.0322896973146192 1 1 FALSE FALSE TRUE FALSE Stomatobaculum 0.0113832114574605 0.459643452191607 0.461301216554894 0.571460642866449 0.0246763092074048 0.804330898250549 0.980535613507787 0.429812418781318 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-5] -0.34219541626091 1.54337019270667 0.163162750173415 0.322352187255388 -2.09726433206852 4.78783843797501 0.170887459836727 0.040961879438982 1 1 FALSE FALSE TRUE FALSE Olsenella 0.171495390668858 -0.0658847066016844 0.342759482144606 0.549204645257129 0.50033740743168 -0.119963855314513 0.621805839769527 0.905600589254073 1 1 FALSE FALSE TRUE FALSE Corynebacterium 0.281630727134688 -0.388920922462636 0.420482358588381 0.693914575313269 0.669780126044199 -0.560473776310373 0.507802568751043 0.57905961721659 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] 0.231759318444695 -0.626443560720307 0.376804475122343 0.449334955669712 0.615065196265109 -1.39415719346078 0.549127358492358 0.186641812516153 1 1 FALSE FALSE FALSE FALSE Solobacterium 0.385530185126164 -0.575298136483364 0.276195409458761 0.447852003636919 1.39586022042024 -1.28457198318078 0.177340732708235 0.21293197661102 1 1 FALSE FALSE TRUE FALSE Abiotrophia 0.312202954875573 -0.560159683095216 0.266493707614344 0.443795601874953 1.17152092509208 -1.26220197029589 0.25338315902926 0.219525419422444 1 1 FALSE FALSE TRUE FALSE Kingella -0.212497748787263 0.648869459195596 0.497277144576472 0.655613904016197 -0.427322572744111 0.989712779458633 0.672300653482197 0.330500963609837 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] -0.257390671262833 1.26663856300569 0.157491241474113 0.293079590792088 -1.63431736808767 4.32182452412476 0.146208629980413 0.00347242063751606 1 0.284738492276317 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-8] 0.161479419701709 -0.207899802177273 0.192206458157245 0.302759958314046 0.840135244413078 -0.686681961957543 0.433028432459493 0.517927551022371 1 1 FALSE FALSE TRUE TRUE Pseudoleptotrichia -0.408885154461764 0.862295713856341 0.205586425313759 0.365581110832402 -1.98887233842282 2.35869876289001 0.0938626107758758 0.0563842170492229 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-7] -0.054065650895298 0.93600810539724 0.15972330914064 0.327106695032122 -0.338495684732477 2.86147645282933 0.742752633673322 0.0187352349173479 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-9] 0.683477307708674 -1.38917561189311 0.216383566877011 0.400186357199224 3.15863777260476 -3.47132176522834 0.00424443086412613 0.00197768529156838 0.356532192586595 0.164147879200176 FALSE FALSE FALSE TRUE Ottowia 0.187579327847731 -0.45981836364383 0.393881960392373 0.502062549431969 0.476232340422167 -0.915858719524224 0.639070092765788 0.370652552565039 1 1 FALSE FALSE TRUE FALSE Absconditabacteria_(SR1)_[G-1] 0.473327098817884 -1.49972569034957 0.218082830890244 0.352038394709374 2.17040056241795 -4.26011967128663 0.0444324032835285 0.000528469574390471 1 0.0449199138231901 FALSE TRUE TRUE TRUE Scardovia 0.222433141322143 0.0148089275501814 0.257243068787384 0.357446178437683 0.864680795368632 0.0414298108176955 0.415859428561446 0.968110179647828 1 1 FALSE FALSE TRUE TRUE Cardiobacterium 0.0846817548871819 -0.00756536507610026 0.331346027833898 0.585511832567321 0.255568945373423 -0.0129209431053307 0.800151813540054 0.989782492769923 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-2] 0.128723533762418 1.48189851575433 0.220455777289648 0.321729851984824 0.583897302874007 4.60603362296711 0.584637528100592 0.00580843987803513 1 0.464675190242811 FALSE FALSE TRUE FALSE Cutibacterium -2.03620119145024 2.95968683718387 0.12243564512021 0.31930135795305 -16.6307874594123 9.26925853418718 3.01546217959728e-06 8.91279537352963e-05 0.000262345209624963 0.00775413197497078 TRUE TRUE FALSE FALSE Peptostreptococcaceae_[XI][G-4] 0.28179760913744 0.311547878695071 0.213394041688665 0.326150252537388 1.3205505032262 0.955228077462109 0.223177216634816 0.367431975583623 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.45275401882482 0.0790735596907025 0.173923737130525 0.322906368944156 2.603175542882 0.244880768221631 0.0352617927905963 0.813572358268063 1 1 FALSE FALSE FALSE TRUE Saccharibacteria_(TM7)_[G-5] -0.318267822479236 0.73158162413826 0.231383835888816 0.459555867609508 -1.37549721767155 1.59193185356061 0.19900364884631 0.142484302583972 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter -0.134050569417808 0.0358063943479225 0.181716097876963 0.30564674383401 -0.737692317763566 0.117149601853335 0.474880216091911 0.908679403949485 1 1 FALSE FALSE TRUE TRUE Propionibacterium -0.559170861056729 0.816452756975404 NA 0.31533974821333 NA 2.58912097698216 1 0.122384685537641 1 1 FALSE FALSE TRUE TRUE Tannerella 0.331437222077511 -0.432323993999267 0.336389664185661 0.510128900850611 0.985277662676887 -0.847479908074981 0.333568398840262 0.404461833342565 1 1 FALSE FALSE TRUE FALSE Mycoplasma 0.197245516238609 0.638078353605077 0.205920851277686 0.312233807225056 0.957870536250948 2.04359149726908 0.408792060327882 0.133584327775559 1 1 FALSE FALSE TRUE TRUE Peptococcus 0.131897293233418 -0.301852717404794 0.30817405498736 0.442759174889372 0.427996098629483 -0.681753726459119 0.674359291807832 0.505144390261563 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-2] 0.0206049912955635 0.0880558143816055 0.144449977766408 0.272518366392267 0.142644475369074 0.323118825154179 0.899644327735517 0.777260357332532 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-3] 0.131047921105468 0.620521974535822 0.190387477216635 0.306475505178224 0.6883221681453 2.02470332555605 0.529090799020854 0.112891345354118 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.488116495908665 -0.772186005566681 0.450015998824698 0.644822785337173 1.08466476121621 -1.1975166249172 0.289309287130565 0.243301645976818 1 1 FALSE FALSE TRUE TRUE Campylobacter 0.413366506383006 -0.659255078494327 0.21194774117928 0.43089380707974 1.95032277335456 -1.52997111506949 0.059943192413371 0.135850432211698 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-1] -0.0951091845892591 0.746657789632749 0.315849071855898 0.464267357797912 -0.301122254469221 1.60824959388542 0.766591869757991 0.124271004616589 1 1 FALSE FALSE TRUE TRUE Arachnia -0.0872920102233792 0.395039894423256 0.326598192951511 0.557252736177604 -0.267276464191396 0.708906154742238 0.790971404774019 0.483515761274558 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.0511719540008615 1.22818578327802 0.280696927622979 0.38615087494391 -0.182303220894508 3.1805852659441 0.862505651975127 0.0245221351167236 1 1 FALSE FALSE TRUE FALSE Porphyromonas 0.789109492526737 -1.43192968335031 0.361726042230537 0.605655264795499 2.18151142135301 -2.36426522905535 0.0371148650946704 0.024735380384279 1 1 FALSE FALSE FALSE FALSE Propionivibrio 0.0352309759089879 0.132814178636036 0.312805813116752 0.419798126591814 0.112628904040982 0.316376301424462 0.912353886843089 0.757639503670809 1 1 FALSE FALSE TRUE TRUE Brachymonas 0.0777513391570076 -0.0556564934285488 0.153055471596968 0.276406634323604 0.507994509087175 -0.201357299417744 0.638189465592452 0.850244217315328 1 1 FALSE FALSE TRUE TRUE Veillonella 0.204352406808817 -0.207877888667431 0.441676884502229 0.596286611658638 0.462673990827306 -0.348620754856788 0.646936609931465 0.729808873908399 1 1 FALSE FALSE TRUE TRUE