taxon lfc_(Intercept) lfc_GroupMale Diseased Baseline se_(Intercept) se_GroupMale Diseased Baseline W_(Intercept) W_GroupMale Diseased Baseline p_(Intercept) p_GroupMale Diseased Baseline q_(Intercept) q_GroupMale Diseased Baseline diff_(Intercept) diff_GroupMale Diseased Baseline passed_ss_(Intercept) passed_ss_GroupMale Diseased Baseline Haemophilus -1.29629629034698 2.62496999593302 0.480820438182513 0.817536527114982 -2.69600912816216 3.21082900747728 0.0117391628405286 0.00331303249034487 1 0.318051119073108 FALSE FALSE FALSE FALSE Fretibacterium 0.328281457633883 -0.306117071886088 0.333749919892325 0.573337511702091 0.983615090423974 -0.533921234243519 0.335539449150732 0.598519085466934 1 1 FALSE FALSE TRUE TRUE Kingella -1.42861217949805 2.63666476060525 0.30070253522603 0.51841480162247 -4.75091498122621 5.08601365615593 7.82322529379312e-05 3.34326821991031e-05 0.00782322529379312 0.00337670090210941 TRUE TRUE FALSE FALSE Peptostreptococcus 0.282833728412785 -0.637066051294228 0.37436386330655 0.506848231243907 0.755504887450061 -1.25691678893846 0.460924355140762 0.226823680902499 1 1 FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-4] 0.253587946354727 -0.561677113775968 0.127153023809259 0.317600177602618 1.99435246412332 -1.76850377734593 0.116867937213489 0.151704102143578 1 1 FALSE FALSE TRUE TRUE Gemella 0.101587487164621 0.183479280054234 0.27012286039252 0.530116281676245 0.376078822121915 0.346111384230771 0.709419867398498 0.731597121434598 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.0808472080259607 0.36943196532789 0.458173134857343 0.622879047869869 -0.176455583872532 0.593103856344629 0.861710608923579 0.55975950780308 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] 0.618536231209055 -0.691208584500523 0.450939073365321 0.624878004044949 1.37166253213094 -1.1061496484533 0.183402078392312 0.28009792292977 1 1 FALSE FALSE TRUE TRUE Prevotella 0.703347211757161 -0.82894880463937 0.31438667307173 0.555447987320035 2.23720428377282 -1.49239681043574 0.0323657976339989 0.145389457743967 1 1 FALSE FALSE FALSE TRUE Lachnospiraceae_[G-8] 0.277300918294902 -0.265271824404377 0.443481806135114 0.621435192296131 0.625281385749606 -0.426869652206577 0.541845116741557 0.675965839945497 1 1 FALSE FALSE TRUE TRUE Desulfobulbus 0.623585843565118 -0.903619441832308 0.33526137813091 0.538845023065004 1.85999904624154 -1.67695608784216 0.0875627077097968 0.119385424509095 1 1 FALSE FALSE TRUE TRUE Dialister 0.430986992542355 -0.610507007965253 0.401232210087831 0.571697803153046 1.07415850897915 -1.06788412444156 0.293433083542735 0.296197053406845 1 1 FALSE FALSE TRUE TRUE Bergeyella -0.259168655624741 0.939670045568376 0.27854280086356 0.534906622693471 -0.930444638386796 1.75669921758822 0.36009414086912 0.0899017494126367 1 1 FALSE FALSE TRUE TRUE Butyrivibrio -0.213520024565581 0.778990783988186 0.296260001854098 0.437213586366917 -0.720718366398765 1.78171678163369 0.494441819591499 0.11799842021198 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-6] 0.219732458963093 -0.454056990646587 0.22451703946549 0.387659089695236 0.978689454868157 -1.17127910248035 0.356397911525215 0.275188384596684 1 1 FALSE FALSE TRUE TRUE Eikenella -0.357271550480012 0.989369063826833 0.33203210039054 0.511326235270587 -1.07601509028731 1.93490768824579 0.290498099837199 0.0624794952062058 1 1 FALSE FALSE TRUE TRUE Lancefieldella 0.186689146186127 -0.171817576763797 0.390067414230387 0.56530061633753 0.47860738778826 -0.303940190047852 0.63911941743092 0.765348979309728 1 1 FALSE FALSE TRUE TRUE Eggerthia 0.3200169477941 -1.99886471634516 0.488443646470582 0.602449131117278 0.65517680515755 -3.31789791552715 0.55910997511652 0.0451248876205529 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-7] -0.120660030346827 0.496576355051349 0.433802101061834 0.596681770450683 -0.278145334131584 0.832229807651535 0.783905117505857 0.41561749437347 1 1 FALSE FALSE TRUE TRUE Schaalia -0.136360563609518 0.49683314512502 0.387864103523604 0.604431306470443 -0.351567887749167 0.821984466731648 0.727619725630343 0.417571036556523 1 1 FALSE FALSE TRUE TRUE Selenomonas 0.919480719237886 -1.1963757673566 0.227317409774553 0.50079396421547 4.04491992122293 -2.38895804032066 0.000308652595574348 0.022962589463439 0.0296306491751374 1 TRUE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-6] 0.49239519514731 -0.731340115004103 0.373579702424495 0.532096802237747 1.3180459001164 -1.37444937073185 0.204973525999225 0.187151381601998 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] 0.400660656573081 -0.721165037887615 0.305443687957666 0.469851662936178 1.31173329935897 -1.53487812170535 0.208120868200215 0.14434995487483 1 1 FALSE FALSE TRUE FALSE Lautropia -0.980994564761741 2.18637448384408 0.356733270293689 0.566501986388512 -2.74993852957453 3.85942951018118 0.012000523633192 0.00090874219760674 1 0.0881479931678538 FALSE FALSE FALSE FALSE Veillonellaceae_[G-1] 0.0981283124883862 -0.043147426069415 0.296974163578944 0.456067167149972 0.3304271028355 -0.0946076130387753 0.744351165601876 0.925523421441485 1 1 FALSE FALSE FALSE FALSE Lachnoanaerobaculum -0.150402921159152 0.508051051666389 0.409286207460218 0.616708789648546 -0.367476153404878 0.823810297816447 0.71602696654153 0.41700956714073 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] 0.117862092816853 -0.145683210013915 0.334268588900852 0.532742059372083 0.352596973602604 -0.273459186206594 0.72774622302096 0.787051091171951 1 1 FALSE FALSE FALSE FALSE Slackia -0.144483260143168 0.599487879334776 0.257449793215978 0.435234813534249 -0.561209462778471 1.377389539377 0.581574969550854 0.185279343921619 1 1 FALSE FALSE TRUE FALSE Parvimonas 0.443083326981109 -0.38210487725965 0.405641615108869 0.69468920585884 1.09230244254449 -0.550037159116725 0.283394702156327 0.58636613464726 1 1 FALSE FALSE TRUE TRUE Bacteroidaceae_[G-1] 0.0777049051274992 -0.051593895245215 0.224520718846768 0.386963341168992 0.34609235854323 -0.133330188563478 0.736444375447163 0.896577207150619 1 1 FALSE FALSE TRUE FALSE Neisseria -0.542155994729549 1.38262967759065 0.501615398722155 0.785689170804758 -1.08082007871104 1.75976674869334 0.288389528365958 0.0886424384631075 1 1 FALSE FALSE TRUE TRUE Centipeda 0.0448415715771008 0.045344718553988 0.248784897198405 0.402221619134294 0.1802423381888 0.112735657152353 0.86056256276962 0.912471136980885 1 1 FALSE FALSE TRUE FALSE Lachnospiraceae_[G-2] -0.373938055534306 1.17533099445796 0.307030376373904 0.493422896173237 -1.21791876084248 2.38199524905165 0.27758773506473 0.0630090418019447 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] 0.250368964317608 -0.010324353043595 0.310395055421905 0.527777779375753 0.806613893952962 -0.0195619320233726 0.426454821754001 0.984526805771307 1 1 FALSE FALSE TRUE TRUE Johnsonella -0.23625094998809 0.682710278594067 0.422305289530095 0.620045088938652 -0.55943166198787 1.10106553664135 0.584124444012517 0.288223705409609 1 1 FALSE FALSE TRUE TRUE Shuttleworthia -0.392827351420907 1.48551234104885 0.145685140470469 0.321562755907185 -2.69641330716589 4.6196654113688 0.0429678607053168 0.00573714881191603 1 0.527817690696275 FALSE FALSE FALSE FALSE Anaerolineae_[G-1] 0.163960199071525 -0.387071637206052 0.212032711700351 0.426794283568601 0.773277848293699 -0.906927885653923 0.453190003619494 0.38094863086519 1 1 FALSE FALSE TRUE TRUE Leptotrichia 0.129198339862158 0.152609865285245 0.511320824886732 0.672630812448283 0.252675685350344 0.226885034793107 0.802301284458772 0.822104924278789 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] -0.240800891281238 0.908849579047731 0.324674458221096 0.475345027446573 -0.741668724421982 1.91197872402248 0.471475377929216 0.0781708307309685 1 1 FALSE FALSE TRUE TRUE Catonella 0.56718910015933 -0.526991621916007 0.368114946721606 0.536927556175563 1.54079345381289 -0.981494832691532 0.134593785781867 0.334753993848419 1 1 FALSE FALSE TRUE FALSE Granulicatella -1.28544794218609 2.5087324189846 0.366919565228949 0.621795900995326 -3.50335077221625 4.03465576882833 0.0015627929473315 0.00038289364430422 0.146902537049161 0.0379064707861178 FALSE TRUE FALSE FALSE Porphyromonas 0.714573938592934 -0.848034240260183 0.294355737917538 0.513377804018661 2.42758623850274 -1.65187165012174 0.0210039351184962 0.108341591399884 1 1 FALSE FALSE FALSE TRUE Aggregatibacter -0.0881494908734564 0.367058320614678 0.493390613947779 0.691177754183242 -0.178660656245857 0.53106211592187 0.859490617078133 0.599563465088828 1 1 FALSE FALSE TRUE TRUE Megasphaera -0.560659555787702 2.1505988631211 0.200562996227069 0.414080706760623 -2.79542869988313 5.193670769994 0.0233619114696801 0.000828783949048477 1 0.0812208270067508 FALSE FALSE FALSE FALSE Streptococcus -0.555645275893009 1.31133842436592 0.176494742545393 0.441867848724128 -3.14822565182133 2.9677163164334 0.00354476818261362 0.0056399239186284 0.32257390461784 0.524512924432441 FALSE FALSE FALSE FALSE Filifactor -0.137824536338338 0.52405093169484 0.550660183845958 0.704717258950686 -0.250289634844731 0.743632889699827 0.805049790089235 0.466195751900376 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-3] 0.181192063232722 -0.408598209555728 0.282677385669341 0.491591693870103 0.640985350857425 -0.831173949134493 0.532669840682712 0.4208798833232 1 1 FALSE FALSE FALSE FALSE Fusobacterium 0.0527225766069175 0.22899806769007 0.165798201013576 0.37572684727998 0.317992452780596 0.609480183138013 0.752622961354562 0.546647707990229 1 1 FALSE FALSE TRUE TRUE Cryptobacterium -0.0937807341842115 0.648670183476877 0.24247572943126 0.39255306354243 -0.386763386192008 1.65243948836681 0.72473421634528 0.197014223806577 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.0918652060607257 0.486484220111027 0.512054392243223 0.673620248165591 -0.179405171505863 0.722193582268088 0.859190695382348 0.477454670200511 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-5] 0.0107276283430888 0.607053776646373 0.35415890868472 0.535590338215432 0.0302904376539029 1.133429289761 0.976263003990644 0.276071184773615 1 1 FALSE FALSE TRUE TRUE Olsenella 0.0657186144156122 0.400490723287213 0.39745289791337 0.601609560790685 0.165349440803263 0.665698734509563 0.870053859759419 0.511951622927545 1 1 FALSE FALSE TRUE TRUE Corynebacterium -0.402372109690481 1.09508065048227 0.43261067598824 0.614698902015684 -0.930102126516682 1.78149114451212 0.360560139861189 0.086085418366484 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] -0.0905353955884355 0.00779906686698663 0.227157417874067 0.379362002113733 -0.398557953492089 0.0205583764940392 0.699509157671641 0.984046513139811 1 1 FALSE FALSE TRUE FALSE Solobacterium 0.170561009083978 -0.182326357197525 0.259365672939141 0.424693943155893 0.657608260766256 -0.42931235572295 0.519595583996891 0.673087439313202 1 1 FALSE FALSE TRUE TRUE Abiotrophia -0.696453307200559 1.63358201805446 0.375264711455384 0.626198955250672 -1.85589874544695 2.60872683411061 0.07826478696115 0.0168065293516006 1 1 FALSE FALSE TRUE FALSE Bifidobacterium -0.0641285045850565 0.882791156307818 0.176557534244855 0.342164919422184 -0.363215904998544 2.58001655400149 0.751240992308915 0.123096725933708 1 1 FALSE FALSE TRUE TRUE Tannerella 0.912740817998636 -1.28907403335715 0.20436254247654 0.522542118308606 4.46628235750892 -2.46692847942994 0.000119101394150615 0.0200096606900481 0.0117910380209109 1 TRUE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] 0.0429247480710143 0.186765518639183 0.161054439760216 0.336769091238761 0.266523221184851 0.554580344509023 0.797516702320808 0.596447411307552 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-8] -0.0547998757191096 0.595472355999411 0.0541684814413363 0.282765089893878 -1.01165611922234 2.10589063955134 0.368925821583756 0.102966553606298 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-3] 0.0517233485565883 -0.378650618840663 0.239799327344302 0.405149938225882 0.21569430210421 -0.934593796308455 0.834035049552881 0.374393339762 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] -0.593164039281307 1.15162638924783 0.243835804842502 0.398139355283816 -2.43263715787943 2.89252085724327 0.0452451042007224 0.0232325125472779 1 1 FALSE FALSE FALSE FALSE Pseudoleptotrichia -0.265782344506802 1.27678985451065 0.0531561262584984 0.362384710434984 -5.00003222985629 3.523299459787 0.00156522113033114 0.00968460689644702 0.146902537049161 0.842560799990891 FALSE FALSE FALSE FALSE Lachnospiraceae_[G-7] 0.00900003560738291 0.0291785787106442 0.209945074942377 0.396006931284551 0.0428685245884102 0.0736819898984997 0.967003518632755 0.943324728052443 1 1 FALSE FALSE TRUE TRUE Mogibacterium 0.111008054946745 -0.151694353377678 0.407698621687324 0.583088632333513 0.27227969152145 -0.260156595354292 0.787836404502088 0.797057825530618 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-9] 0.0582160268070872 0.142595541046067 0.52724866632293 0.668560566787638 0.110414744551352 0.213287394037048 0.912868085740836 0.832648195077669 1 1 FALSE FALSE TRUE TRUE Ottowia 0.882404633183979 -1.0692457427238 0.283920673730028 0.482087722911225 3.10792666695005 -2.21794850171013 0.00719969486964785 0.0424156966427085 0.647972538268307 1 FALSE FALSE FALSE FALSE Absconditabacteria_(SR1)_[G-1] 0.0594846141972108 -0.578982947038644 0.21066930991299 0.367543538512744 0.282360132198558 -1.57527717500213 0.782909449819025 0.143495740351368 1 1 FALSE FALSE FALSE FALSE Peptidiphaga -0.997588547766292 1.9599895457833 0.391878880045437 0.639329158787959 -2.54565529954211 3.06569709646756 0.0180724052222218 0.00547431982332269 1 0.520060383215655 FALSE FALSE FALSE FALSE Scardovia 1.20923232941241 -1.06150553019005 0.0383029618923964 0.303114376770795 31.5702042262287 -3.50199664396891 6.98348367137391e-05 0.0394242890361033 0.00705331850808765 1 TRUE FALSE FALSE FALSE Cardiobacterium -0.364619688049642 1.16497017257525 0.351061407516421 0.556835941197566 -1.03862082314641 2.09212460328942 0.308544198031629 0.0463375296815804 1 1 FALSE FALSE TRUE FALSE Bacteroidetes_[G-6] 0.0410258910199671 -0.00785011519383638 0.329557336805731 0.465131635717764 0.124487870358508 -0.0168771904360419 0.912312854092199 0.988066873921631 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 0.163570955989666 -0.0333112324808705 0.0383341988599591 0.292248626621849 4.26697207334935 -0.113982511623479 0.0129813600961022 0.91474371463308 1 1 FALSE FALSE FALSE TRUE Erysipelotrichaceae_[G-1] 0.603535072595583 -1.5628244152495 0.264858879255442 0.407787877797072 2.27870432092823 -3.83244451427074 0.0629115038901943 0.00863453652037323 1 0.768473750313218 FALSE FALSE TRUE FALSE Rothia -1.75561264312193 3.1568660079926 0.450265848332329 0.727683937006028 -3.89905796680845 4.33823786324206 0.000503544640146357 0.000149626385236874 0.0478367408139039 0.0149626385236874 TRUE TRUE FALSE TRUE Saccharibacteria_(TM7)_[G-5] -0.489614895208761 1.01377253812088 0.395625765521777 0.628761749222268 -1.23757080018038 1.61233176059906 0.241641144097115 0.135186445638265 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter -0.157613655589447 0.371153928050893 0.278608385756754 0.454013589787348 -0.565717557859352 0.81749519485691 0.580540365888929 0.427339585539659 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.315990644156132 0.903925550413227 0.185882246246037 0.413096922542505 -1.69995064368805 2.18816820239134 0.0988419819619143 0.036072822364345 1 1 FALSE FALSE TRUE FALSE Mycoplasma -0.297872563711609 0.371464175871252 0.225243504387219 0.406094140149041 -1.32244685378155 0.914724294556233 0.210670599488048 0.378350365603429 1 1 FALSE FALSE TRUE TRUE Peptococcus 0.478430911420103 -0.646188625575103 0.287254277713107 0.483360430185975 1.66553102439063 -1.33686703590213 0.11139421388515 0.196275026110901 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-2] -1.00542644856257 2.16256171496128 0.241957423206494 0.410788250187477 -4.15538583292196 5.26441959811247 0.0253377044758051 0.0133566402005521 1 1 FALSE FALSE FALSE FALSE Capnocytophaga -0.39246881291878 1.08270763961362 0.345966112581297 0.568864663090047 -1.13441403260718 1.90327807273597 0.265317072210651 0.0663257895454722 1 1 FALSE FALSE TRUE TRUE Propionibacteriaceae_[G-1] -2.31941688205945 3.8309735399117 0.0383029618923964 0.344735765992487 -60.5545045987652 11.1127823621155 0.000272602275238129 0.00800051691881621 0.0264424206980985 0.720046522693459 TRUE FALSE FALSE FALSE Bacteroidetes_[G-3] -0.33820696360293 0.477523218725339 0.378869726131956 0.516296394677124 -0.892673497710758 0.92490132344226 0.388257857863779 0.371867917597803 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.253788162960636 -0.418058953586105 0.457927373162722 0.676604791945064 0.554210509862781 -0.617877612696614 0.584170710475743 0.542030815013577 1 1 FALSE FALSE TRUE TRUE Campylobacter 0.0265755082578181 0.397769596241905 0.242635260907802 0.436406956067602 0.109528632229247 0.911464839667423 0.913537632524355 0.369565240944622 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-1] 0.00522363152843927 0.0548294830191581 0.345492108957389 0.530501469282763 0.0151193946055756 0.103354064397385 0.988166505676598 0.919259365743679 1 1 FALSE FALSE TRUE TRUE Arachnia -0.988015773090266 2.03659625400623 0.471557762884657 0.700757554530866 -2.09521685539919 2.90627798564322 0.0444154146617064 0.00669662888379058 1 0.609393228424943 FALSE FALSE FALSE FALSE Treponema 0.769717216175694 -0.941777812150876 0.353061097145466 0.661613652923141 2.18012469342823 -1.42345583104265 0.0367158506884123 0.164281707369432 1 1 FALSE FALSE FALSE TRUE Anaeroglobus -0.396012232776909 1.32926399397514 0.471001515904916 0.61974549620401 -0.840787597076131 2.14485462519209 0.412137367098134 0.046706785576833 1 1 FALSE FALSE TRUE FALSE Desulfovibrio -0.726868206009165 1.91075140422707 0.265870438527409 0.483730982069268 -2.73391885925757 3.95002899349842 0.029173138189348 0.00553180584054053 1 0.520060383215655 FALSE FALSE FALSE FALSE Sneathia -0.34616402419829 1.24918469455575 0.183591852754888 0.384464936329261 -1.88550863779588 3.24915116182645 0.155844241659225 0.0475200822125363 1 1 FALSE FALSE TRUE FALSE Lacrimispora 0.88460088336571 -1.78142474616173 0.183345103109512 0.352547280712168 4.82478598207958 -5.05300946461177 0.0169684702294186 0.0149534468940818 1 1 FALSE FALSE FALSE FALSE Micavibrio -0.680775959899663 1.07701626567395 0.0383029618923964 0.280129881573049 -17.7734547477595 3.84470324845764 0.00315064919122944 0.061478360116475 0.289859725593108 1 FALSE FALSE FALSE TRUE Propionivibrio 0.0594782030945005 0.0655904687643788 0.154154689623686 0.350732040073313 0.385834535684224 0.187010199440771 0.706976908385412 0.855057225464364 1 1 FALSE FALSE TRUE TRUE Schnuerera 1.19086504192506 -1.33794829056489 0.154050143092232 0.350698542795281 7.73037283848597 -3.81509509535063 0.000245977503187068 0.00881099803083053 0.0241057953123327 0.775367826713086 TRUE FALSE FALSE FALSE Enterocloster 0.0390431123375411 -0.619746471945255 0.146123556663932 0.324363295205799 0.267192458416106 -1.91065537039894 0.79999156513352 0.114290146963889 1 1 FALSE FALSE TRUE TRUE Brachymonas 0.0670243409352389 -0.0428086742884622 0.0876523925048571 0.406995858120413 0.764660712843917 -0.105182088304685 0.459247297263842 0.917969029611476 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-2] 0.0919937001899106 -0.491394619537332 0.233920957701759 0.396184195165873 0.393268312056073 -1.24031858295507 0.700494923238917 0.236777773837748 1 1 FALSE FALSE TRUE FALSE Veillonella -0.901038945602678 1.88553123784358 0.507913021709777 0.739176545191722 -1.77400245138337 2.55085371702984 0.0858865602746839 0.0159022126136241 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-4] 0.135821258010313 -0.0739173268037535 0.389297135771623 0.56703299652835 0.348888408184928 -0.130358069559111 0.730819266503545 0.897585391714648 1 1 FALSE FALSE TRUE TRUE