taxon lfc_(Intercept) lfc_GroupFemale Diseased 21 days se_(Intercept) se_GroupFemale Diseased 21 days W_(Intercept) W_GroupFemale Diseased 21 days p_(Intercept) p_GroupFemale Diseased 21 days q_(Intercept) q_GroupFemale Diseased 21 days diff_(Intercept) diff_GroupFemale Diseased 21 days passed_ss_(Intercept) passed_ss_GroupFemale Diseased 21 days Lachnospiraceae_[G-3] -0.245139648800998 0.912736175933416 0.457340075239239 0.626143483756833 -0.536011738470028 1.45771089153087 0.59851244773558 0.162146964494065 1 1 FALSE FALSE TRUE TRUE Fretibacterium 0.499561665033884 -0.954687215868033 0.347941585191595 0.625699642763663 1.43576303119617 -1.52579153098324 0.16732969866285 0.143536235112683 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] -0.0811314035657792 0.617755216813557 0.238302824691935 0.484467620199431 -0.340455064561915 1.27512178535122 0.738952571294664 0.224583832699096 1 1 FALSE FALSE TRUE TRUE Capnocytophaga 0.301559010653477 -0.325462302281587 0.35090180391188 0.680066744950461 0.859382902258334 -0.478574058646691 0.399397018688808 0.636963561207415 1 1 FALSE FALSE TRUE TRUE Dialister -0.121938886208214 0.579283583459732 0.408048928320156 0.582105877563926 -0.298833982263373 0.995151579441173 0.76831063118602 0.332168282338278 1 1 FALSE FALSE TRUE TRUE Haemophilus -0.251317947159519 0.60066458389934 0.492451215908387 0.857138973645008 -0.510340799333661 0.700778522933097 0.615399235273935 0.49151456698366 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum -0.472716864251044 1.53279979748926 0.409518662728651 0.579715770370687 -1.15432312925936 2.64405399306137 0.260753300471669 0.0148215418743191 1 1 FALSE FALSE TRUE FALSE Veillonellaceae_[G-1] 0.0272878904817104 0.331920723168958 0.304840220347236 0.6272142141009 0.0895153876041271 0.529198343575106 0.929520579592414 0.602217628096636 1 1 FALSE FALSE TRUE TRUE Prevotella -0.0860749976946175 0.26476523381801 0.316135462795832 0.544007284640224 -0.272272515501391 0.48669428019353 0.787741243081804 0.630890125487445 1 1 FALSE FALSE TRUE TRUE Neisseria 0.213283665606431 -0.0570226802295229 0.505649426256197 0.875719908932631 0.421801458741033 -0.0651152036717138 0.677456532200247 0.948698171949103 1 1 FALSE FALSE TRUE TRUE Granulicatella -0.0251462137200277 0.497604228246447 0.37187748487705 0.729688932573954 -0.0676196186718363 0.681940215937173 0.946794961375983 0.503505805388711 1 1 FALSE FALSE TRUE TRUE Mogibacterium 0.0419297396426529 0.297647948144389 0.410533605800334 0.708536405786245 0.102134731603546 0.420088432596624 0.919574947755644 0.678495356907791 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-5] 0.188799617717088 0.146338020183176 0.404011783749898 0.774483938424179 0.467312156008707 0.188949070371847 0.648648192310092 0.853290726975011 1 1 FALSE FALSE TRUE TRUE Slackia -0.0442660993424328 0.495335481182594 0.265093423986661 0.467614343654716 -0.166983015560055 1.05928205134004 0.869353551354394 0.3042908682717 1 1 FALSE FALSE TRUE TRUE Peptococcus 0.197513039337646 -0.0545590705561754 0.298107671574782 0.468648982158265 0.662556043238556 -0.116417772433677 0.516497798639907 0.908685686192579 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] 0.00555887863145364 0.249167362883218 0.345934364680363 0.576896432060603 0.0160691714932396 0.43191004318266 0.987338431853462 0.670427355824644 1 1 FALSE FALSE TRUE TRUE Eggerthia 0.00717754392535665 -0.0680362540478068 0.493134028667967 0.601364908952743 0.0145549556674163 -0.113136388630141 0.988950151088072 0.914324554215975 1 1 FALSE FALSE TRUE TRUE Riemerella 0.0682717224115759 0.0652764848472673 0.251175076886697 0.478993674720531 0.271809302331269 0.136278385900091 0.789042060916233 0.893202027002981 1 1 FALSE FALSE TRUE TRUE Rothia -0.193428422737066 0.785629019719758 0.455430316959093 0.813260440411808 -0.424715737038736 0.966023896750642 0.676077344826766 0.346833058014537 1 1 FALSE FALSE TRUE TRUE Solobacterium -0.232626807674266 0.952015727806806 0.27042946544142 0.485534074113244 -0.860212504190514 1.96075986952208 0.401640912902669 0.0665027266486276 1 1 FALSE FALSE TRUE TRUE Abiotrophia -0.163031921216421 0.67297308804568 0.380673907083396 0.693325718396167 -0.428271857310947 0.970644922277559 0.673830033601871 0.345333857122564 1 1 FALSE FALSE TRUE TRUE Peptostreptococcus 0.0786181437843607 0.141343124301309 0.38204341662221 0.681722121283132 0.205783270601686 0.207332459793551 0.83926968609381 0.83807776440657 1 1 FALSE FALSE TRUE TRUE Johnsonella 0.042040620357207 0.119763670642573 0.434187048397048 0.639303840879301 0.0968260580604939 0.18733450823297 0.924462882008612 0.85452850466249 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.147291034688839 -0.0108619228637971 0.275045303394413 0.442252887042473 0.535515541880111 -0.0245604340458582 0.605271765923793 0.980941517363063 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.347532890219672 1.11607481351756 0.462334313579332 0.585412406928901 -0.751691752076799 1.90647618722764 0.461447088793197 0.0718277340558809 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-6] 0.432901523926243 -0.468101564825104 0.234530800344674 0.402534037223316 1.84581949701292 -1.16288691523846 0.102129677593917 0.27838733694398 1 1 FALSE FALSE TRUE TRUE Megasphaera -0.0795069642401339 0.794336103678022 0.213762705984059 0.555150168518681 -0.371940296480262 1.43084907241867 0.717002921588649 0.18026288355192 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-7] 0.580976771524544 -0.92983369231345 0.44052003743211 0.628208171860185 1.31884300862042 -1.48013625731757 0.209982607116163 0.16266021627754 1 1 FALSE FALSE TRUE TRUE Leptotrichia -0.342263707263585 1.22018964701884 0.561495389211249 0.783387323264416 -0.609557467149239 1.55758155740158 0.548694133987231 0.134275952641084 1 1 FALSE FALSE TRUE TRUE Gemella 0.421382923859047 -0.623230392931847 0.279907072482294 0.580081594784671 1.50543864476916 -1.07438401517151 0.146434891327846 0.294293555601456 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.108401696406929 0.348961376602496 0.246033716301811 0.485161119493908 -0.440596915074648 0.719269048118515 0.668038118736216 0.486975035512976 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] 0.100630951791007 0.156765038988338 0.314070474467394 0.532095267404725 0.320408825317499 0.294618367408066 0.751681880280213 0.771047555092153 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.487193473541426 1.13657135065638 0.4726355441141 0.605776267727284 -1.0308015967242 1.87622297407012 0.317964994726961 0.078988118674403 1 1 FALSE FALSE TRUE TRUE Butyrivibrio 0.446077216221568 -2.19976704391247 0.305046625370086 0.43470446841434 1.46232470423294 -5.06037366474862 0.193971010893494 0.00230982860625679 1 0.228673032019422 FALSE FALSE TRUE FALSE Streptococcus -0.188871402852192 0.771257341835651 0.192234769288292 0.476728048879338 -0.982503860001228 1.61781406327711 0.336074659100142 0.119336374370006 1 1 FALSE FALSE TRUE TRUE Phocaeicola -0.271835368341617 0.689345178753066 0.237451575998364 0.448573761047325 -1.1448033865376 1.53674877715449 0.281821440390325 0.158731678000165 1 1 FALSE FALSE TRUE TRUE Parvimonas 0.160323218519308 -0.022366797645032 0.41210028440931 0.645408282338004 0.389039329951228 -0.0346552690089563 0.700825526318171 0.972653640008978 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.536022573455487 1.70298686175773 0.515953493224908 0.684726167709978 -1.03889707210846 2.48710644059837 0.310667238275972 0.0213646494183909 1 1 FALSE FALSE TRUE FALSE Lachnospiraceae_[G-2] -1.86661598064242 3.44234657288217 0.316858489358389 0.630729248391301 -5.89100826814567 5.45772466024369 0.000231640149392672 0.000401612300296433 0.0231640149392672 0.0405628423299398 TRUE TRUE FALSE TRUE Olsenella -0.333679496841485 1.11530318217012 0.404351582536639 0.659114804610655 -0.8252211967323 1.69212279009411 0.418522083563181 0.105409088467827 1 1 FALSE FALSE TRUE TRUE Filifactor 0.185479833854589 -0.155589073463988 0.560458101481215 0.72820820697305 0.330943264740738 -0.213660148257223 0.744731534620087 0.833353597938433 1 1 FALSE FALSE TRUE TRUE Anaerolineae_[G-1] 0.246894539880421 -0.632926947765392 0.230039332302316 0.465835343356526 1.07327098113793 -1.35869241523175 0.308365632057586 0.204100144488942 1 1 FALSE FALSE TRUE TRUE Lautropia 0.725696863788114 -0.97199897770307 0.363051549450463 0.713908114419035 1.99888105390701 -1.36151832157569 0.0629039853419909 0.192215905707257 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-3] 0.292721192534901 -0.147804735758652 0.291899561244315 0.521736111222621 1.00281477398281 -0.283294049576692 0.33001153718601 0.780372356519031 1 1 FALSE FALSE TRUE TRUE Cardiobacterium 0.538743699808083 -0.762045614389186 0.352395138997296 0.568206017604496 1.52880570753905 -1.34114316071818 0.14279066766025 0.195687286849796 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.263354247522734 1.04102363765572 0.31330940341034 0.493051192628829 -0.840556474386502 2.11139056799607 0.412263316106483 0.049847530405039 1 1 FALSE FALSE TRUE FALSE Weeksellaceae_[G-1] 0.221178210589995 -0.33584447103232 0.264346960308009 0.448725656222259 0.836696629052533 -0.748440536829864 0.420568459957055 0.469895087476694 1 1 FALSE FALSE TRUE TRUE Shuttleworthia -0.468902718400973 1.12625165501886 0.166601138056477 0.411639991722845 -2.81452290105016 2.73601126631341 0.0202270975435758 0.0229971865346397 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[G-1] -0.0161275161856864 0.499306941915478 0.354733583513338 0.639143388940346 -0.0454637421863385 0.78121271463559 0.964300276236149 0.446083392049954 1 1 FALSE FALSE TRUE TRUE Lancefieldella -0.33820249258926 1.1304782144816 0.398790486231457 0.585359702238911 -0.848070614184534 1.93125391132613 0.409727994605055 0.0725721498283605 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.154745130540819 0.413550521651446 0.201825828048366 0.412994390528204 -0.76672610258651 1.00134658275269 0.450721085870025 0.326648987403587 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] 0.131079251323656 -0.476761655681195 0.256144341126366 0.442493331929549 0.51173978994519 -1.0774437065576 0.63062543175959 0.330496909635928 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-4] 0.577789782513146 -2.20734867496599 0.147670822797097 0.325265029280808 3.91268750027243 -6.78630801425733 0.0595458549704057 0.0210310856447653 1 1 FALSE FALSE TRUE FALSE Ottowia 1.03352855889859 -2.10216961791109 0.294085748287916 0.509404094253853 3.51437825503446 -4.1267230507643 0.00559064243690331 0.00205491096825379 0.542292316379621 0.205491096825379 FALSE FALSE FALSE FALSE Pseudoramibacter -1.38230301242114 2.0257261290199 0.0852577766235766 0.418970051772077 -16.2132191005189 4.83501415065797 8.46719421922667e-05 0.00843052665080596 0.00855186616141894 0.79246950517576 TRUE FALSE FALSE FALSE Peptoanaerobacter 0.0965567521625034 -0.424649956061715 0.290882736008675 0.470060993451043 0.331943908007052 -0.903393308481237 0.745657582981699 0.384093777550579 1 1 FALSE FALSE TRUE TRUE Centipeda -0.345342066847503 1.09447012513301 0.257537505462276 0.573368215163844 -1.34093892937116 1.90884338578178 0.201292280535571 0.0769966795535974 1 1 FALSE FALSE TRUE TRUE Kingella -0.416492045900098 1.29268500052034 0.308150951063244 0.581746556743503 -1.35158448955953 2.22207589462415 0.196540223506133 0.0420820206213925 1 1 FALSE FALSE TRUE FALSE Arachnia 0.121291208686106 0.107180422440103 0.478707123597799 0.703246558573289 0.253372474958222 0.152408029777701 0.80233311718457 0.880254251958263 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] 0.196181749550964 -0.190744740164001 0.537981589821873 0.715138176403671 0.364662570732059 -0.266724314905448 0.719009793274715 0.792283042399769 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.364113998253036 -0.475594272520528 0.311330237739568 0.56826335293209 1.16954267242625 -0.836925819809753 0.254700548684568 0.411633666990183 1 1 FALSE FALSE TRUE TRUE Tannerella 0.0153237667782305 0.361502283019003 0.221428435695282 0.399989500659473 0.0692041504521048 0.903779430267506 0.945452297093976 0.375902827900941 1 1 FALSE FALSE TRUE TRUE Desulfobulbus 0.228508226448734 -0.249084884683799 0.350183896222889 0.558328397116609 0.65253779203853 -0.446126125717688 0.527455632111688 0.664160258713691 1 1 FALSE FALSE TRUE TRUE Catonella 0.129040459214129 0.0885822211728461 0.378593008737295 0.557607231519759 0.340842160938238 0.15886132059553 0.73645593022517 0.875227456260926 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-8] -0.202119005680616 1.48761304994838 0.09396559070077 0.297564813862873 -2.15098957153642 4.99929084570437 0.164420434868887 0.03775966273556 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[G-3] -0.0848835979811709 0.0919507279582635 0.251518721686896 0.437320997752365 -0.33748421354828 0.21025911957315 0.744436229661853 0.838721757049675 1 1 FALSE FALSE TRUE TRUE Bifidobacterium -0.150426323729847 1.1335849412068 0.192325469609856 0.353123205452169 -0.782144580408387 3.21016835966716 0.491184730221847 0.0489499556246007 1 1 FALSE FALSE TRUE FALSE Pseudoleptotrichia 0.198528114398709 0.0728870396534974 0.275379847688587 0.525890838847297 0.720924628526971 0.138597279643165 0.482041541727638 0.891611963507172 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 0.769471205812536 -0.680140419626561 0.253538143620722 0.431035969256642 3.03493271199311 -1.57792033179857 0.0229518666235622 0.165659876187532 1 1 FALSE FALSE FALSE TRUE Veillonella -0.828241684952332 1.87279305620972 0.507913330841924 0.762348514356168 -1.63067522480544 2.45661009491357 0.116014125095982 0.021639921566361 1 1 FALSE FALSE TRUE TRUE Peptidiphaga 0.047560736761671 0.300199056611668 0.397498270549194 0.749748605024101 0.11965017280694 0.400399620086012 0.906162902290156 0.693849091739443 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] 0.553253141341931 -1.29647091851097 0.178276981851636 0.344088770237596 3.10333468513818 -3.76783850753325 0.0172414973263829 0.00700269617681813 1 0.679261529151359 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[G-6] 0.566446257453937 -0.866081356543543 0.383421070305293 0.632196958219757 1.47734775504881 -1.3699549567312 0.160269643678765 0.190859357683583 1 1 FALSE FALSE TRUE TRUE Absconditabacteria_(SR1)_[G-1] 0.720069370994931 -1.41772508498671 0.221210793672998 0.45324109563103 3.25512765014245 -3.12797118057634 0.0062660863436854 0.00800398155960872 0.601544288993798 0.760378248162829 FALSE FALSE FALSE FALSE Scardovia -0.0618428907640348 0.0629917197731379 0.0852448392029902 0.320793077678763 -0.725473721837527 0.196362465889045 0.543565794694062 0.862470166283198 1 1 FALSE FALSE TRUE TRUE Odoribacter 1.48317016493627 -2.76371107465651 0.339146659907164 0.46816431316571 4.37324125598721 -5.90329291860883 0.0485135233446066 0.0275164538589989 1 1 FALSE FALSE FALSE FALSE Lachnospiraceae_[G-7] 0.155448591849339 0.0505309128399311 0.224756402521944 0.465514235226132 0.691631428983038 0.108548587811466 0.503505211236324 0.915515299565929 1 1 FALSE FALSE TRUE TRUE Selenomonas -0.0202578527793114 0.388044728033647 0.234580858510974 0.517756741383667 -0.0863576547033728 0.749473057553293 0.931929511488242 0.461169705517522 1 1 FALSE FALSE TRUE TRUE Mitsuokella -0.493476387238563 1.05913641262291 0.0852448392029902 0.329879367667897 -5.78892976809384 3.21067795209668 0.0102537693485151 0.0489309156390206 0.974108088108937 1 FALSE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-2] -0.282318448888922 1.29368750586541 0.251845383502085 0.396034102652097 -1.12099910255684 3.26660632809663 0.37881572106979 0.0823095648712031 1 1 FALSE FALSE TRUE TRUE Colibacter 0.635918936571127 -0.477095638149949 0.0852448392029902 0.295889576537879 7.45991126872605 -1.61241110191278 0.0174990795805256 0.248198788122292 1 1 FALSE FALSE FALSE TRUE Bacteroidetes_[G-5] 0.241935195613172 -0.515257336161771 0.338114271974912 0.512129191330663 0.715542689754083 -1.00610811663163 0.486927545779054 0.332724123498889 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] 0.0564463375080144 -0.0396704716754585 0.248689594173794 0.420350021817915 0.226975067837248 -0.0943748533755109 0.823723988238945 0.926148811716935 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-5] 0.151529719333286 -0.081995678329161 0.370354298413238 0.609340805437808 0.409147996884352 -0.134564561567886 0.68862164791628 0.894871583389302 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] 0.298380739421936 -0.420692700846578 0.455058030686828 0.614530157312136 0.655698217151743 -0.684576169030705 0.522648469060708 0.504787365515406 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.208486948787795 -0.131829820982502 0.187024169236501 0.354977904499418 1.11475938986342 -0.371374723078626 0.27646684272589 0.713757580060898 1 1 FALSE FALSE TRUE TRUE Alloprevotella -0.0995069979872387 0.576706434805351 0.465298133817085 0.704014449447645 -0.213856430437256 0.819168463456712 0.832721764453215 0.421890020299162 1 1 FALSE FALSE TRUE TRUE Treponema 0.197417585978843 -0.0755228830624669 0.367336382605864 0.504086035998457 0.537429983325837 -0.149821414737023 0.596365415035085 0.882270559898374 1 1 FALSE FALSE TRUE TRUE Corynebacterium -0.0837022989676904 0.546400695374742 0.436414155456799 0.774473874130219 -0.191795563734816 0.70551210780142 0.849836232402924 0.488628237411675 1 1 FALSE FALSE TRUE TRUE Aggregatibacter -0.0152977281552302 0.449018584585447 0.499106791554679 0.72052468667547 -0.0306502103639564 0.623182790109854 0.975852303853287 0.540206589243263 1 1 FALSE FALSE TRUE TRUE Schaalia -0.263595945589312 0.941085848056378 0.496882088060423 0.734171684071035 -0.530499995719825 1.28183348455771 0.600850477941183 0.212672521919339 1 1 FALSE FALSE TRUE TRUE Eikenella 0.46434807258097 -0.713332375057901 0.339886556236307 0.504620503436641 1.3661854641233 -1.41360164757448 0.185090830588494 0.170871575742476 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-3] 0.179615267817488 -0.270362300932314 0.387507833062053 0.580720192861624 0.463513902153109 -0.465563802078321 0.650660914404639 0.649231101781828 1 1 FALSE FALSE TRUE TRUE Campylobacter 0.144817453300526 0.0507174353654951 0.25078781696666 0.452065275293357 0.57745011321574 0.112190513488529 0.569498620146393 0.911689720772757 1 1 FALSE FALSE TRUE TRUE Desulfovibrio -0.306616442750745 1.4511799450453 0.282012340189393 0.418313103630559 -1.08724477285224 3.46912380331967 0.356476214232509 0.0403719948117235 1 1 FALSE FALSE TRUE FALSE Sneathia -0.149975773422778 0.561683276462675 0.197891243821601 0.419612315598597 -0.757869678953465 1.33857671851553 0.490725406799647 0.251724663972336 1 1 FALSE FALSE TRUE TRUE Lacrimispora 1.38040339604608 -2.37503217156743 0.198593284380812 0.444165264089571 6.95090672552195 -5.34718124893367 0.00225069190705628 0.0058967845874061 0.220567806891516 0.577884889565797 FALSE FALSE FALSE FALSE Propionivibrio -0.0551378286688907 0.251881325383909 0.173446953651388 0.356104438861374 -0.317894477291958 0.707324306850222 0.75870437607534 0.499447838939212 1 1 FALSE FALSE TRUE TRUE Schnuerera 1.17993831416972 -1.80824979087257 0.173656324791118 0.41134000057246 6.79467514695479 -4.39599792958633 0.00105101279478548 0.00704820113934353 0.104050266683762 0.679261529151359 FALSE FALSE FALSE FALSE Enterocloster 1.63872162447297 -2.63667896166515 0.166062107945465 0.356150432032958 9.86812491270515 -7.4032732365776 2.33493137837073e-05 0.000149007534776299 0.00238163000593815 0.0151987685471825 TRUE TRUE FALSE FALSE Brachymonas 0.319744269931171 -0.952252326203937 0.118956124711422 0.335075686284929 2.68791767306512 -2.84190218861239 0.0275854824446305 0.0217482326135119 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[G-4] -0.00768269563087416 0.153757926425763 0.4028612194005 0.567099722605032 -0.0190703280953844 0.271130314999027 0.985020793622258 0.789757650187873 1 1 FALSE FALSE TRUE TRUE