taxon lfc_(Intercept) lfc_GroupFemale Healthy Baseline se_(Intercept) se_GroupFemale Healthy Baseline W_(Intercept) W_GroupFemale Healthy Baseline p_(Intercept) p_GroupFemale Healthy Baseline q_(Intercept) q_GroupFemale Healthy Baseline diff_(Intercept) diff_GroupFemale Healthy Baseline passed_ss_(Intercept) passed_ss_GroupFemale Healthy Baseline Lachnospiraceae_[G-3] -0.0115710578515917 0.0758205072384881 0.273321593480943 0.426402988688135 -0.0423349567965932 0.177814202174699 0.966875001908631 0.861609710280331 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.627259403014217 -0.882702806886503 0.441466978702546 0.686695367478849 1.42085237010865 -1.28543579684727 0.168222797053699 0.210906080144732 1 1 FALSE FALSE TRUE TRUE Gemella 0.151864499313714 -0.0595597860969047 0.252279607326684 0.513393280166189 0.601968985614679 -0.116012009502004 0.552839751529726 0.908608298195825 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-2] 0.0824645913068915 -0.454201692832947 0.329049575328813 0.439685892244418 0.250614489395666 -1.03301402397614 0.810473407452384 0.341426437790954 1 1 FALSE FALSE TRUE FALSE Actinomyces -0.0714069082597886 0.250030038515557 0.243660286315909 0.418081132653969 -0.293059280769327 0.598041908584519 0.771717452739826 0.554795757244149 1 1 FALSE FALSE TRUE TRUE Prevotella 0.36838765573982 -0.464106057206559 0.344823316818615 0.679657677281309 1.06833742897265 -0.682852666452654 0.295576124341152 0.500979354618254 1 1 FALSE FALSE TRUE TRUE Dialister -0.165092855872571 0.649687909095682 0.298414592411444 0.507196891817945 -0.553233186549225 1.28093826988373 0.587306336667688 0.217415014552709 1 1 FALSE FALSE TRUE TRUE Haemophilus 0.712691453752826 -1.16285882989247 0.455249545176891 0.690536830271066 1.56549624552816 -1.68399248080077 0.131122776676305 0.105708162450612 1 1 FALSE FALSE FALSE FALSE Granulicatella 0.626814931547635 -0.948474885248488 0.332742168884613 0.555162214968319 1.88378567600489 -1.708464408556 0.0717657113005874 0.100453853627242 1 1 FALSE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-5] -3.70252387498576 4.84405713981838 0.0162156950018487 0.414650281612656 -228.329644493414 11.6822714336016 4.76210289975693e-13 2.3717237640762e-05 3.7144402618104e-11 0.0018736617736202 TRUE TRUE FALSE FALSE Slackia -0.712357828419999 1.75345092052592 0.0663677919483907 0.316774462907742 -10.7334869446003 5.53532915636762 3.8631722026262e-05 0.00146590157683233 0.00262695709778582 0.107713309682611 TRUE FALSE FALSE FALSE Streptococcus 0.319623388943547 -0.417021644948956 0.224884038629653 0.464123451129726 1.42128090055299 -0.89851448775941 0.166683062252167 0.37685463890091 1 1 FALSE FALSE FALSE TRUE Veillonellaceae_[G-1] -0.360461867075262 0.845433552023408 0.310779060651019 0.463744486145119 -1.15986536004121 1.82305898459534 0.266962978118869 0.0913649560385379 1 1 FALSE FALSE TRUE TRUE Tannerella -0.570481145404983 1.45324868477705 0.312043011601225 0.521522663673057 -1.82821317637463 2.78654943687758 0.083263042393318 0.0117631246027949 1 0.799892472990054 FALSE FALSE TRUE FALSE Peptococcus -0.457676047429822 0.894385860179636 0.259184652825327 0.439247769477557 -1.76583004603388 2.03617621381077 0.107879550279283 0.0690876984334438 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.310322433655687 0.594861230251279 0.318589028999223 0.53736134401942 -0.974052479554917 1.10700413580509 0.350964048753853 0.291912694942142 1 1 FALSE FALSE TRUE TRUE Riemerella 0.212561068636556 -0.301002496259921 0.321763064814084 0.48762570111088 0.660613637427199 -0.617281852810865 0.516790405017998 0.544376316797355 1 1 FALSE FALSE TRUE TRUE Rothia 0.249192596522962 -0.296874999055018 0.52875638969135 0.850330283611803 0.471280539358442 -0.349129044062775 0.641226280905999 0.729700628834143 1 1 FALSE FALSE TRUE TRUE Solobacterium -0.0624232035424431 0.513529190288618 0.259986440515532 0.463583033956212 -0.240101766148507 1.10773939655679 0.813501718595301 0.285421686731687 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.217269764633387 -0.395982119210064 0.389488083591971 0.560934859537455 0.55783417718371 -0.705932449155664 0.584229623807386 0.48979213224399 1 1 FALSE FALSE TRUE TRUE Peptostreptococcus -0.317550788180261 0.729833759181195 0.397265071764987 0.574426890731518 -0.799342330221562 1.27054246755713 0.439627964735677 0.227971903199423 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 1.3999220932142 -1.04600725053101 1.58280089147451e-06 0.285413619924894 884458.746993792 -3.6648820431424 1.27833546383109e-12 0.0670510202757161 9.71534952511626e-11 1 TRUE FALSE FALSE TRUE Oribacterium -0.318130059380208 1.19366673342922 0.550318521004947 0.722278320175736 -0.57808350480239 1.6526409558282 0.57036998565994 0.115739599071931 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-6] -0.595497955162249 -0.0495292411451425 1.58280089147451e-06 0.249748061333664 -376230.490120267 -0.198316819280416 1.69210042536047e-06 0.87536474915049 0.000121831230625954 1 TRUE FALSE FALSE TRUE Megasphaera -0.494345492797864 1.20067601872506 0.272376906790351 0.426375898864544 -1.8149317378744 2.81600348875841 0.107079577964026 0.0226327645695179 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[G-7] -0.422176649741721 0.729031326233041 0.319874461724291 0.458658228668314 -1.31981980513845 1.58948707483073 0.228418369846289 0.155974977388238 1 1 FALSE FALSE TRUE TRUE Fretibacterium -1.63448540494877 3.32487375481157 0.381225983051656 0.572402943504741 -4.28744492142158 5.80862448829115 0.00202766337404185 0.000256687115642282 0.133825782686762 0.0195082207888135 FALSE TRUE FALSE FALSE Campylobacter -0.0652242578705431 0.317602205313746 0.251377934925186 0.477580475987506 -0.259466917372659 0.665023428055831 0.797487750444314 0.512375942411105 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.933130654277231 2.60637677606794 0.140258493986692 0.314572238067385 -6.65293507547407 8.28546343466464 0.0069213234609472 0.00368300180826793 0.436043378039674 0.265176130195291 FALSE FALSE FALSE FALSE Schaalia 0.151631385660477 -0.0807996129432733 0.278425593709205 0.459462722106177 0.544602899612903 -0.175856732343568 0.590851956767457 0.861823206994845 1 1 FALSE FALSE TRUE TRUE Neisseria 1.24254638427784 -2.15306594864268 0.399580965949452 0.701149480638081 3.10962355608057 -3.07076594663278 0.00510883421453158 0.00559422536611252 0.326965389730021 0.397190000993989 FALSE FALSE TRUE TRUE Capnocytophaga 0.471229773634713 -0.612251449295366 0.308271316228478 0.552933574850032 1.52862024076693 -1.10727848179851 0.139432594862973 0.27914831899053 1 1 FALSE FALSE TRUE TRUE Parvimonas -0.481186842629182 1.17862463189791 0.393686974405311 0.610293204494332 -1.22225746319406 1.93124325032338 0.2373747959625 0.0693553766217194 1 1 FALSE FALSE TRUE TRUE Olsenella -0.76612831112249 1.39243804507188 0.417914555488267 0.630040813065066 -1.83321758254481 2.21007594460088 0.0916811236672756 0.0472739740730096 1 1 FALSE FALSE TRUE FALSE Mogibacterium -0.412779655415128 1.1120270348858 0.504384249227393 0.648168326932264 -0.818383317971201 1.71564544066654 0.424461910600347 0.104393887483676 1 1 FALSE FALSE TRUE TRUE Filifactor -1.85234586701804 4.01052734433206 1.58280089147451e-06 0.23884440384833 -1170296.19896943 16.7913808308391 5.43981748319818e-07 0.0378687576997348 3.97106676273467e-05 1 TRUE FALSE FALSE FALSE Lautropia 0.509680702606606 -0.903717207507408 0.363858251853173 0.644162765142843 1.40076719439711 -1.40293301073838 0.175231415878337 0.17459269610019 1 1 FALSE FALSE FALSE FALSE Johnsonella 0.20293993751316 -0.438251463296255 0.17378254690604 0.399887902391536 1.16778089127031 -1.09593578769272 0.281126987383845 0.309373636545289 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-3] -0.187997540319561 0.508434587492568 0.311238507063385 0.438205772140771 -0.604030465553142 1.16026446892451 0.55927637681756 0.272891772282732 1 1 FALSE FALSE TRUE TRUE Cardiobacterium 0.523142980762069 -0.799838756362379 0.230872335525366 0.555652089832272 2.26594052324035 -1.43945963850117 0.0347066199986075 0.165489291489162 1 1 FALSE FALSE FALSE TRUE Ruminococcaceae_[G-1] -0.50753833358117 1.01609232628494 0.26965572271076 0.393478353467023 -1.8821715648348 2.58233348119898 0.0965823681090216 0.0324981815391422 1 1 FALSE FALSE TRUE FALSE Weeksellaceae_[G-1] -0.168036364573736 0.580226454256524 0.393095650038331 0.497439794004277 -0.427469407400847 1.16642548756671 0.67809602608925 0.270506341628404 1 1 FALSE FALSE FALSE FALSE Shuttleworthia 1.44923816213089 -2.06635041358413 0.0649218869444249 0.307889101424156 22.322797908993 -6.71134640370874 9.15554145476396e-08 0.000274561624914621 6.77510067652533e-06 0.0205921218685966 TRUE TRUE FALSE FALSE Peptostreptococcaceae_[G-1] -1.18726164140795 2.42180122649135 0.185277243796709 0.410059396384798 -6.40802732747175 5.90597666543592 3.36230316271381e-05 7.18599408868632e-05 0.00231998918227253 0.00560507538917533 TRUE TRUE FALSE FALSE Lancefieldella 0.245066095934778 -0.174995591803993 0.359159594575225 0.574344008313819 0.682332031877404 -0.304687764250822 0.503716002377876 0.764098702217366 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-4] -0.240398130989969 -0.115730883689318 0.252391197428949 0.377912909220446 -0.952482231705578 -0.306236915611182 0.411121043238195 0.779446952151954 1 1 FALSE FALSE TRUE TRUE Ottowia -1.31943697459223 2.08240654083754 0.32696172101177 0.47929682346279 -4.03544785153836 4.34471175041952 0.00237857206426746 0.00145558526598123 0.154607184177385 0.107713309682611 FALSE FALSE FALSE FALSE Peptoanaerobacter -0.536890601206514 0.402383540711303 0.263948717405076 0.394803024514501 -2.03407164272202 1.01920075512624 0.0814221031197397 0.342033466526738 1 1 FALSE FALSE TRUE TRUE Stomatobaculum 0.198097183961616 -0.189885345342205 0.258911801320833 0.444789727915805 0.765114540747186 -0.426910365560755 0.457869051985308 0.676429897188564 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] 0.160735987899748 0.00831013133382911 0.282190093537909 0.538820425824878 0.569601809491427 0.0154228216591959 0.574718506571697 0.987833870652307 1 1 FALSE FALSE TRUE TRUE Kingella 0.285893795908226 -0.390169562077031 0.424904494560815 0.630236660442517 0.672842484765261 -0.619084205293732 0.507752004862307 0.541944966689118 1 1 FALSE FALSE TRUE TRUE Arachnia 0.106757347315695 -0.0542353708497564 0.532167755885333 0.732696166120753 0.200608447496203 -0.0740216386512633 0.842695062897259 0.941606672414754 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] 0.136864078478729 0.0886869428024088 0.202201667242283 0.419725159562898 0.676869188792272 0.211297657006712 0.510354282982575 0.835931364093122 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.166722176786751 0.0227330227108183 0.508252845219198 0.680201580879109 0.328029992069888 0.0334210083449638 0.746476289742196 0.973687461826825 1 1 FALSE FALSE FALSE FALSE Catonella -0.375994139515103 0.897722256455268 0.269398026177266 0.435256026506292 -1.39568260707187 2.06251539734233 0.181878555324011 0.0557832306175309 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-8] -0.277536597280012 0.371030135141664 1.58280089147451e-06 0.241723155343549 -175345.236899294 1.53493832485488 3.63066475952413e-06 0.367599118691291 0.000257777197926214 1 TRUE FALSE FALSE TRUE Pseudoleptotrichia -0.259682437987576 0.653781812855983 0.383008271176881 0.553008586190012 -0.67800738921288 1.18222723694085 0.50553621959188 0.25098103405129 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 0.0499979485087837 0.29592672199028 0.238591007431832 0.413632026606998 0.209555041688101 0.715434741399866 0.839983248081213 0.497503378241069 1 1 FALSE FALSE TRUE TRUE Peptidiphaga 0.495947454885946 -0.776722213888874 0.478641248760459 0.706125891451742 1.03615694671177 -1.09997696344485 0.311384552033021 0.283233331787356 1 1 FALSE FALSE TRUE TRUE Gracilibacteria_(GN02)_[G-1] 0.125989333815942 0.10847756643815 0.19448532471378 0.341374699270992 0.647808949088359 0.317766860490261 0.545675041574031 0.763503987762114 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -1.78068072185812 2.89774067984047 1.58280089147451e-06 0.308293795874803 -1125018.77617675 9.3992831468371 7.90097083231348e-13 0.011130437818764 6.08374754088138e-11 0.768000209494719 TRUE FALSE FALSE FALSE Propionibacterium 1.2986462740486 -3.24616680162369 0.396467049197324 0.501540424030072 3.2755465471287 -6.47239314338708 0.188633784655252 0.0975876336720759 1 1 FALSE FALSE TRUE TRUE Absconditabacteria_(SR1)_[G-1] -0.042275215867286 -0.122914628528208 0.191023470230134 0.360615126326371 -0.221309014103635 -0.340847123581182 0.829305435024483 0.740271310538986 1 1 FALSE FALSE TRUE TRUE Scardovia 0.128407522034376 -0.623998817830342 0.398758810848662 0.507582047544535 0.322018018262949 -1.2293555708855 0.758362972331954 0.264957712447502 1 1 FALSE FALSE FALSE FALSE Cutibacterium -1.92416932475475 2.83571933771378 0.0121312408589388 0.30432823545447 -158.612737734652 9.31796332824342 4.23646428292827e-12 8.65237633048352e-05 3.1773482121962e-10 0.00666232977447231 TRUE TRUE FALSE FALSE Lachnospiraceae_[G-7] -0.162451434403121 0.718294615150417 0.122490499297531 0.330439179081766 -1.32623701703203 2.17375741322937 0.242111035888806 0.0817543863794152 1 1 FALSE FALSE TRUE TRUE Selenomonas 0.24411776748403 -0.221620119502241 0.426395387843118 0.653899806838167 0.572515028173446 -0.338920607078707 0.57305219643893 0.738035121403178 1 1 FALSE FALSE TRUE TRUE Leptotrichia 0.789513572468355 -1.09300436503862 0.279898939550585 0.547761297057047 2.82070940938906 -1.99540268892855 0.00969691597400009 0.0579764964029673 0.601208790388005 1 FALSE FALSE FALSE TRUE Bacteroidetes_[G-5] -0.468595790597409 0.919719928148387 1.58280089147451e-06 0.339843101801763 -296054.793196935 2.70630747916395 8.49873828552764e-17 0.0733932294100497 6.71400324556684e-15 1 TRUE FALSE FALSE TRUE Peptostreptococcaceae_[G-2] -0.742722434132832 2.0198320429901 0.0873011698479869 0.262059391500005 -8.50758856297226 7.7075354232823 0.0744878477168737 0.0821382262044986 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.0147726731912498 0.103017811334374 0.186584002323531 0.516264995407078 0.0791743826227635 0.199544443746654 0.93747781946593 0.843332095480362 1 1 FALSE FALSE TRUE TRUE Alloprevotella -0.174809007429507 0.461978672030375 0.292493648118632 0.569801953953424 -0.597650610718925 0.810770599898886 0.560340306924529 0.432090556704102 1 1 FALSE FALSE TRUE TRUE Treponema -0.773637047880522 1.63264579424273 0.548328686909875 0.725809558664861 -1.41090018879074 2.24941346493977 0.172917159853079 0.0353401355529586 1 1 FALSE FALSE TRUE FALSE Corynebacterium 0.523180118417331 -0.745694764883755 0.436761506718653 0.731211590149211 1.19786224374014 -1.01980709131209 0.241776938149062 0.317216046915293 1 1 FALSE FALSE TRUE TRUE Eikenella 0.741428758384246 -1.12712550145401 0.179166808799189 0.445122051315365 4.13820374071206 -2.53217179001417 0.000466919187754648 0.019380055855376 0.0312835855795614 1 TRUE FALSE FALSE FALSE Lachnoanaerobaculum 0.448161298777763 -0.505128029693854 0.325726577654942 0.519787660953445 1.37588188843626 -0.971796884841973 0.182109435551633 0.34126154021195 1 1 FALSE FALSE TRUE TRUE Propionivibrio 0.0576548974884245 -0.18490521088033 0.17720638519672 0.349175727181632 0.325354514874962 -0.529547721924404 0.758086458985267 0.619085926804364 1 1 FALSE FALSE TRUE TRUE Veillonella 0.370463148642912 -0.536533524350468 0.401612798795976 0.594011415940888 0.922438601940851 -0.903237732393783 0.365117143442541 0.375021035151243 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-4] -0.721897672217241 1.67642482660814 0.0155684642722105 0.256816141380917 -46.3692281778762 6.52772375441006 2.20828166978539e-05 0.00730565434071477 0.00154579716884978 0.511395803850034 TRUE FALSE FALSE FALSE