#Species	F4401.S01	F4401.S02	F4401.S03	F4401.S04	F4401.S05	F4401.S06	F4401.S07	F4401.S08	F4401.S09	F4401.S10	F4401.S11	F4401.S12	F4401.S13	F4401.S14	F4401.S16	F4401.S17	F4401.S18	F4401.S19	F4401.S20	F4401.S21	F4401.S22	F4401.S23	F4401.S24	F4401.S25	F4401.S26	F4401.S27	F4401.S28	F4401.S29	F4401.S30	F4401.S31	F4401.S32	F4401.S33	F4401.S34	F4401.S35	F4401.S36	F4401.S37	F4401.S38	F4401.S39	F4401.S40	F4401.S41	F4401.S42	F4401.S43	F4401.S44	F4401.S45	F4401.S46	F4401.S47
Staphylococcus saprophyticus (SP1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1746	0	0	0	0	0	0	0	0	0	0
Ileibacterium valens (SP11)	118	0	0	0	0	0	0	0	0	0	0	0	0	0	0	312	1046	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	156	0	0	0	25	0	0	0
Bacteroides thetaiotaomicron (SP17)	382	86	3824	2683	3455	17042	250	3618	1063	773	882	222	631	137	140	727	460	194	738	1296	2097	0	0	0	0	71	0	92	0	124	0	0	0	0	0	0	0	0	0	0	898	2836	309	766	28	429
Akkermansia muciniphila (SP18)	25	29	0	0	0	0	0	2251	221	203	1365	1022	650	618	191	461	1839	79	86	412	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Staphylococcus ureilyticus (SP19)	315	0	0	0	0	142	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	124	87	0	0	36	0	0	81	0	0	0	0	0	222	197	0	58	0	0
Ligilactobacillus murinus (SP2)	200	338	0	20	0	0	231	0	529	360	0	1269	1789	226	812	684	478	0	301	666	286	0	0	0	0	0	0	360	257	0	0	52	0	0	27	0	0	0	73	90	620	87	2323	266	0	0
Bifidobacterium pseudolongum (SP20)	0	0	179	114	0	0	0	135	39	164	0	37	42	11	0	122	0	0	37	0	0	0	0	0	0	0	0	0	51	0	0	0	0	0	0	0	0	153	0	0	0	0	45	0	0	0
Sutterella sp._str._cont1.66 (SP26)	0	0	0	0	0	0	0	727	444	498	565	385	411	213	453	409	78	106	327	281	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Propionibacterium acnes (SP28)	34	0	0	0	27	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	99	219	481	160	297	533	269	135	175	68	12	508	291	0	0	158	0	245	317	0	0	44	0	0	0
Streptococcus species1_MOT12 (SP3)	0	27	3611	16156	0	0	16642	0	0	0	0	0	0	0	0	0	0	0	0	0	6029	0	109	0	0	0	0	375	0	0	0	15717	0	0	0	57	0	0	0	0	10443	9561	10159	20412	21989	3245
Acutalibacter muris (SP32)	0	0	0	0	0	0	0	0	87	92	102	0	131	288	448	62	0	264	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Acinetobacter johnsonii (SP33)	0	0	17	20	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	125	60	0	77	56	81	152	0	32	0	0	0	106	30	54	0	211	70	0	0	0	0	0	9	0
Escherichia coli (SP4)	568	4283	5143	0	4798	0	0	0	0	0	0	0	0	0	0	0	4766	899	4301	3937	0	294	120	0	144	0	0	179	0	43	0	0	0	135	0	96	0	0	0	71	0	0	0	0	927	7616
Corynebacterium mastitidis (SP5)	0	0	1193	777	169	129	1464	0	0	0	0	0	0	0	0	0	0	0	0	0	114	0	0	0	0	0	0	0	0	0	0	231	0	0	0	0	0	0	0	0	81	66	12851	346	30	0
Streptococcus thoraltensis (SP7)	37725	28917	16595	13243	29160	30004	8251	0	0	0	0	0	0	0	0	0	0	0	0	0	22323	0	0	0	0	0	283	171	0	0	0	10600	0	0	0	2575	0	0	0	0	17497	21501	2084	8749	4325	11847
Streptococcus danieliae (SP8)	83	71	273	785	352	210	87	0	0	0	0	0	0	0	0	0	0	0	0	0	459	0	0	0	0	0	0	248	0	0	0	62	0	0	0	0	0	0	0	0	539	344	215	214	174	406
Duncaniella freteri_nov_90.512% (SPN106)	0	9	0	0	0	0	0	655	696	571	888	803	708	505	488	593	252	514	621	751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	75	0	0	0	0	45	0	0	0
Dubosiella newyorkensis_nov_87.451% (SPN107)	0	0	67	0	0	0	0	0	0	0	0	0	101	35	0	402	31	79	130	76	0	0	0	0	101	0	0	0	0	0	117	0	0	0	0	0	0	0	155	0	0	0	0	0	0	0
Duncaniella freteri_nov_86.567% (SPN114)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	494	234	244	226	0	0	0	0	0	0	0	0	92	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
Duncaniella freteri_nov_91.255% (SPN121)	0	0	0	0	0	0	0	0	0	0	0	134	199	80	196	198	17	85	106	163	0	0	0	0	0	0	105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_83.146% (SPN131)	0	0	0	0	0	0	0	119	101	0	93	0	141	139	227	125	77	106	101	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Erysipelatoclostridium sp._str._HGF2_nov_88.787% (SPN137)	0	0	0	0	0	0	0	0	183	0	113	321	46	0	324	81	0	62	0	22	0	0	0	0	0	0	0	109	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
Duncaniella freteri_nov_84.815% (SPN153)	20	0	0	0	0	0	0	4687	7135	5663	4206	6827	7107	4372	3107	4398	542	3163	5378	4422	0	0	183	0	58	0	0	157	0	0	0	0	122	118	0	52	0	0	69	0	0	0	115	0	0	0
Duncaniella freteri_nov_87.500% (SPN154)	0	0	0	0	0	0	0	0	0	0	0	97	126	42	543	95	0	134	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	100	0	0	0	0	0	0	0
Duncaniella freteri_nov_87.617% (SPN155)	0	0	0	0	0	0	0	0	0	0	0	0	222	194	0	204	197	61	54	204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Lacnoclostridium hathewayi_nov_94.212% (SPN156)	0	0	0	0	0	0	0	0	0	0	0	0	44	292	148	0	0	482	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_87.194% (SPN157)	0	0	0	0	0	0	0	173	109	78	129	91	233	95	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Alistipes finegoldii_nov_92.789% (SPN159)	0	0	0	0	0	0	0	0	0	0	0	124	171	113	0	144	36	116	0	142	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Acetivibrio cellulolyticus_nov_83.851% (SPN160)	0	0	0	0	0	0	0	0	0	0	210	68	173	105	143	63	0	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Eubacterium siraeum_nov_91.252% (SPN161)	0	0	0	0	0	0	0	40	123	104	36	205	0	246	0	0	0	0	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_91.667% (SPN181)	12	0	0	0	0	0	0	0	0	0	0	1472	1754	1684	1902	3129	0	2657	2421	2876	0	0	0	0	0	0	0	0	0	87	0	0	0	48	0	0	0	28	61	0	0	0	37	0	0	0
Duncaniella freteri_nov_88.476% (SPN20)	0	0	0	0	0	0	0	0	317	205	28	328	224	151	182	400	150	391	323	177	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_86.989% (SPN212)	0	0	0	0	0	0	0	734	641	439	662	446	666	426	534	744	238	459	544	321	0	0	0	155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Gabonia massiliensis_nov_86.891% (SPN223)	0	0	0	0	0	0	0	650	615	542	887	591	537	359	691	439	167	431	439	416	0	0	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Alistipes senegalensis_nov_93.846% (SPN243)	0	0	0	0	0	0	0	0	0	0	0	453	65	871	2283	335	94	466	113	234	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0
Duncaniella freteri_nov_93.974% (SPN252)	0	0	0	0	0	0	0	736	585	638	500	157	102	103	107	352	0	215	550	376	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
Duncaniella freteri_nov_94.151% (SPN261)	0	0	0	0	0	0	0	924	785	825	1005	0	168	163	0	169	0	0	96	183	0	0	0	0	0	0	0	0	0	0	0	0	0	91	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_93.585% (SPN271)	0	0	0	0	0	0	0	865	582	373	438	175	214	160	94	384	0	78	213	283	0	0	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	234	0	0	0	0	0	0
Turicibacter sanguinis_nov_95.635% (SPN31)	0	0	0	0	0	0	0	0	585	187	189	544	96	46	0	424	0	109	192	437	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
Duncaniella freteri_nov_88.743% (SPN41)	0	0	0	0	0	0	0	339	0	0	230	261	256	206	316	265	0	341	289	239	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Alistipes finegoldii_nov_93.690% (SPN48)	11	0	0	0	0	0	0	0	0	0	0	332	231	300	396	173	247	214	114	216	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_87.079% (SPN56)	0	0	0	0	0	0	0	326	253	252	302	0	187	201	0	0	0	63	296	314	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_87.896% (SPN69)	0	0	0	0	0	0	0	298	164	100	164	228	225	115	168	124	0	135	154	173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_85.661% (SPN77)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1854	0	0	0	0	0	0	0	0	112	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Alistipes senegalensis_nov_94.073% (SPN84)	0	0	0	0	0	0	0	0	239	187	0	160	269	230	202	72	218	195	0	103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Hathewaya proteolytica_nov_83.768% (SPN99)	0	0	0	0	0	0	0	0	187	209	125	116	204	299	124	0	56	56	0	109	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
multigenus multispecies_spp2_3 (SPP2)	236	1829	2269	0	2150	0	0	0	0	0	0	0	0	0	0	0	2032	476	1807	1741	0	207	0	0	61	132	112	0	0	0	70	0	0	0	0	0	0	0	307	0	0	0	0	0	387	3269
Propionibacterium acnes (SPP4)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	162	149	165	153	30	179	0	102	0	151	0	0	0	0	0	0	0	0	0	0	0	0	0
multigenus multispecies_sppn9_2_nov_92.263% (SPPN9)	0	0	0	0	0	0	0	0	0	0	61	47	0	121	638	0	0	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0