taxon lfc: Smoker 12 Weeks P1 vs. Baseline B P1 se: Smoker 12 Weeks P1 vs. Baseline B P1 W: Smoker 12 Weeks P1 vs. Baseline B P1 p: Smoker 12 Weeks P1 vs. Baseline B P1 q: Smoker 12 Weeks P1 vs. Baseline B P1 diff: Smoker 12 Weeks P1 vs. Baseline B P1 Streptococcus mitis (SP1) -0.664814179765788 0.667314640900676 -0.996252950285171 0.319127257884871 1 FALSE Corynebacterium durum (SP10) -0.0122273338714992 0.475662547273274 -0.0257058999948432 0.979491917897965 1 FALSE Actinomyces sp._HMT_175 (SP100) 0.0678106283967659 0.647924019590769 0.104658303051638 0.916646949534749 1 FALSE Lachnoanaerobaculum saburreum (SP101) 0.483956031163479 0.531578076092427 0.910413828051351 0.362604307860762 1 FALSE Prevotella intermedia (SP104) -0.0432494193105607 0.537270183063522 -0.0804984543604335 0.935840825488962 1 FALSE Neisseria elongata (SP105) 0.364096171264934 0.442354489070945 0.823086868700319 0.410458595611027 1 FALSE Solobacterium moorei (SP106) -0.604505921830958 0.43891206210294 -1.37728254478725 0.168424909749307 1 FALSE Prevotella maculosa (SP107) 0.0771890075716104 0.439467365387921 0.175642183358655 0.860575059964353 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP109) 0.107091374650407 0.521562454110619 0.20532799822223 0.837315870625848 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) -0.477079762067448 0.582623483541557 -0.818847464176097 0.412873446824827 1 FALSE Streptococcus salivarius (SP115) -0.863694604846993 0.603654955915797 -1.43077530695775 0.15249462224999 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) -0.071610259495129 0.422901668640868 -0.169330756545066 0.865536485055554 1 FALSE Leptotrichia hongkongensis (SP119) 0.103244732834009 0.564748448545259 0.182815434198993 0.854942837963151 1 FALSE Selenomonas sputigena (SP12) 0.163727525562083 0.575099257570172 0.284694378243229 0.775878298012034 1 FALSE Peptidiphaga gingivicola (SP121) -0.292104383380393 0.544795639609615 -0.536172395927593 0.591839409387726 1 FALSE Olsenella sp._HMT_807 (SP124) -0.97529986028364 0.635869352529377 -1.53380542151319 0.12507752883762 1 FALSE Selenomonas noxia (SP128) -0.139142313735331 0.495594746226089 -0.280758250152747 0.778895827635053 1 FALSE Capnocytophaga leadbetteri (SP129) 0.651925919773147 0.530218382423698 1.22954228179172 0.218868555223848 1 FALSE Parvimonas micra (SP13) 0.0400321663881229 0.620492561725443 0.0645167546840576 0.948558766595564 1 FALSE Capnocytophaga sp._HMT_864 (SP130) 0.0866683040962944 0.408583694120235 0.212118851886415 0.832014312661476 1 FALSE Gemella haemolysans (SP131) -0.543581503115171 0.456921624968761 -1.18966026865621 0.234179947385045 1 FALSE Dialister invisus (SP134) 0.37495577864038 0.576382612542702 0.6505327719486 0.515348139982676 1 FALSE Actinomyces sp._HMT_170 (SP136) -0.254185247009997 0.518028103946682 -0.490678488432279 0.623653863470995 1 FALSE Leptotrichia wadei (SP137) -0.343013687990665 0.632437685794963 -0.542367565524662 0.587565318814555 1 FALSE Treponema sp._HMT_237 (SP140) 0.334075540238716 0.467904185453621 0.713982799523023 0.475237815554898 1 FALSE Bergeyella sp._HMT_322 (SP141) -0.00637015901359102 0.510866942417197 -0.0124693114482026 0.990051186725401 1 FALSE Gemella morbillorum (SP142) 0.00631065786982263 0.534284620218229 0.0118114159214335 0.990576072716879 1 FALSE Leptotrichia sp._HMT_417 (SP143) -0.0294286422212355 0.442212139493729 -0.0665486982219149 0.946940988034211 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP144) -0.128965423927413 0.432284960503736 -0.298334283425293 0.765448040559343 1 FALSE Stomatobaculum longum (SP145) 0.388221067009124 0.534350063039218 0.726529467969073 0.467514249283135 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) -0.409954853147931 0.429788933239498 -0.953851580258083 0.340158775825159 1 FALSE Prevotella salivae (SP147) 0.38833804710356 0.467506166487752 0.830658662795914 0.406166484782511 1 FALSE Alloprevotella sp._HMT_473 (SP15) 0.254602190961299 0.435563830499142 0.584534741256025 0.558860598691809 1 FALSE Campylobacter showae (SP151) 0.572584369723098 0.459416536186704 1.24632947363132 0.212643461575571 1 FALSE Porphyromonas endodontalis (SP156) 0.328666332306022 0.567120040485519 0.579535739954889 0.562227738292955 1 FALSE Scardovia wiggsiae (SP158) -0.153655682642279 0.628528623927983 -0.244468870299031 0.806867708548292 1 FALSE Capnocytophaga endodontalis (SP159) -0.10135540152293 0.462651436942766 -0.219075082080569 0.826591560922082 1 FALSE Streptococcus intermedius (SP167) 0.571661376433098 0.591844182949612 0.965898445743054 0.334095000167529 1 FALSE Mycoplasma faucium (SP169) 0.149381316773211 0.435249988625305 0.343208088861799 0.731441919827549 1 FALSE Fusobacterium nucleatum (SP17) 1.19452789927626 0.494515987609577 2.41554960649594 0.0157114821806103 1 FALSE Treponema sp._HMT_257 (SP170) -0.21818017804048 0.428551577346169 -0.509110663858883 0.610674657486119 1 FALSE Lachnoanaerobaculum orale (SP174) -0.370288898841656 0.438152270524047 -0.845114641078492 0.398046834510807 1 FALSE Actinomyces sp._HMT_897 (SP175) 0.057513838353356 0.532166468992719 0.10807490081481 0.913936277766026 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) -0.299634141715873 0.53216528473925 -0.563047140255846 0.573402784512708 1 FALSE Capnocytophaga sp._HMT_336 (SP179) -0.186915355349363 0.404747312612401 -0.461807526634177 0.644219352910375 1 FALSE Catonella morbi (SP18) 0.57245358265689 0.504432455766583 1.13484684839903 0.25643949322455 1 FALSE Leptotrichia sp._HMT_215 (SP184) 0.230030823634873 0.452487200483084 0.508369791210199 0.611194033993161 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) -0.106438934282798 0.414873394374622 -0.256557628727297 0.797520287686681 1 FALSE Prevotella veroralis (SP19) 0.540265524897584 0.467229987822729 1.1563160306024 0.24755191364155 1 FALSE Prevotella pleuritidis (SP193) 0.123689079866812 0.52816779541559 0.234185198227558 0.814841205654767 1 FALSE Lautropia mirabilis (SP194) 1.05032684079018 0.567660303974854 1.85027354112242 0.0642741341524465 1 FALSE Granulicatella adiacens (SP20) -0.296747766638362 0.637203080096043 -0.465703597342364 0.641427677070944 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) -0.245838575451632 0.424199948630533 -0.57953466577562 0.562228462871596 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) -0.595952946687328 0.550479649304796 -1.08260668208164 0.278983040100707 1 FALSE Bulleidia extructa (SP212) -0.14911263765997 0.397727711658714 -0.374911360936103 0.707726389524939 1 FALSE Streptococcus cristatus (SP214) -0.268346858013713 0.639803448458223 -0.419420774708805 0.674908643902293 1 FALSE Neisseria sicca (SP215) 0.103977051788401 0.491846120014434 0.211401589963442 0.832573916168168 1 FALSE Peptococcus sp._HMT_167 (SP218) 0.351245533566748 0.504628455191061 0.696047814889392 0.486398885984025 1 FALSE Tannerella sp._HMT_808 (SP22) -0.383634346284049 0.449273645817767 -0.85389906542539 0.393160917447992 1 FALSE Oribacterium sp._HMT_078 (SP220) 0.628019730863784 0.553246842784876 1.13515285094538 0.256311280634956 1 FALSE Fretibacterium sp._HMT_360 (SP223) -0.368612590269416 0.47437385728507 -0.777050810470575 0.437128793437472 1 FALSE Peptostreptococcus stomatis (SP226) 0.159629986951118 0.475279010642986 0.335865845906306 0.736972033438088 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) -0.488536553810539 0.638791325345818 -0.764782698866587 0.444400951739176 1 FALSE Treponema sp._HMT_231 (SP231) -0.131668343811425 0.407379886927351 -0.323207767581579 0.74653789866919 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP232) -0.0276997613000936 0.524455319064798 -0.0528162462905085 0.957878316899803 1 FALSE Capnocytophaga sputigena (SP24) 0.213690420997075 0.461842528206398 0.462691086130501 0.643585808536893 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP244) 0.628824308533169 0.416209412407464 1.5108363477315 0.130830151477925 1 FALSE Filifactor alocis (SP245) 0.12625291935876 0.487190461346794 0.259144891732374 0.795523448920934 1 FALSE Kingella oralis (SP253) 0.166553262556055 0.590230885792103 0.282183238060368 0.77780301037138 1 FALSE Actinomyces israelii (SP256) -0.275478126187207 0.625441332009604 -0.440453983592783 0.659608333580329 1 FALSE Arachnia propionica (SP258) -0.318342175347195 0.469524953659969 -0.678009066111828 0.497765944899414 1 FALSE Shuttleworthia satelles (SP260) -0.144435277243871 0.465127114551636 -0.310528611910963 0.756159004949441 1 FALSE Actinomyces sp._HMT_448 (SP264) -1.22591503103865 0.741841380560981 -1.65252985767876 0.0984265836550199 1 FALSE Rothia aeria (SP269) 0.0153217268586082 0.536841906432469 0.028540482169932 0.977231081065802 1 FALSE Aggregatibacter sp._HMT_458 (SP27) -0.245883141378715 0.47069519490653 -0.522382943440803 0.601403729365598 1 FALSE Schaalia sp._HMT_180 (SP275) -0.334877289941693 0.563117680752498 -0.594684381946939 0.55205446353327 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) -0.473888289685564 0.540375175615244 -0.876961620500088 0.38050748453932 1 FALSE Tannerella sp._HMT_286 (SP28) 0.309160675625858 0.40808552014573 0.757587957336626 0.448697691777127 1 FALSE Alloprevotella sp._HMT_912 (SP299) 0.214631933253078 0.403454058174406 0.531986056167755 0.594735653031301 1 FALSE Actinomyces naeslundii (SP3) 0.162016246144951 0.525353912514739 0.308394479008293 0.757782182503619 1 FALSE Prevotella melaninogenica (SP30) 0.357457650282527 0.495426753413004 0.72151462919593 0.47059294321005 1 FALSE Fusobacterium canifelinum (SP301) 0.21668912366249 0.392381941885582 0.552240306017131 0.580783722782189 1 FALSE Actinomyces oris (SP31) -0.293958683991188 0.650954484144355 -0.451581010886776 0.651570852376292 1 FALSE Mogibacterium timidum (SP319) 0.263539385883051 0.505114824276714 0.521741539184519 0.601850298429232 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) 0.337359196095798 0.447409128849486 0.75402841458179 0.450832159938666 1 FALSE Lancefieldella parvula (SP338) -0.330653641232793 0.544812191429958 -0.606913072860819 0.543908601965494 1 FALSE Streptococcus gordonii (SP34) -0.373652383535429 0.644111015356227 -0.580105563524293 0.561843432170137 1 FALSE Lancefieldella rimae (SP341) 0.15573230387192 0.610028450802769 0.255286952054421 0.798501476906872 1 FALSE Fretibacterium fastidiosum (SP345) 0.105660159706331 0.509597732824406 0.207340325320362 0.835744083285305 1 FALSE Corynebacterium matruchotii (SP35) -1.16913308154054 0.641674852624841 -1.82200233772302 0.0684546309417509 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) 0.209691817319543 0.44148276227257 0.47497169819301 0.63480714594858 1 FALSE Prevotella sp._HMT_300 (SP36) 0.139384284548728 0.514262493348544 0.271037235558728 0.786362393893124 1 FALSE Actinomyces massiliensis (SP360) -0.120752181526695 0.495898925707303 -0.243501599352058 0.807616846286572 1 FALSE Cryptobacterium curtum (SP364) -0.159053964912652 0.441152291859482 -0.3605420800201 0.718441794198951 1 FALSE Actinomyces viscosus (SP366) -0.0966891827263836 0.461257450307606 -0.209620858507332 0.83396359858455 1 FALSE Aggregatibacter aphrophilus (SP37) 0.489380485578572 0.46294720110621 1.05709783839108 0.290466937648136 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) -0.389340775161035 0.426129593426561 -0.91366753486961 0.360891567947441 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP391) 0.0987401471954821 0.423185735346895 0.233325792785861 0.815508431512384 1 FALSE Streptococcus parasanguinis_clade_411 (SP4) -0.551176728053686 0.658128198862268 -0.837491432530207 0.402316390723289 1 FALSE Streptococcus sanguinis (SP40) 0.665453715100048 0.686180492957916 0.969793985590407 0.332149191362751 1 FALSE Actinomyces sp._HMT_414 (SP407) -0.463679723770028 0.428812650724985 -1.0813107378854 0.279558912525694 1 FALSE Streptococcus mutans (SP41) -0.784061559896971 0.701899186737711 -1.1170572280346 0.263969856944991 1 FALSE Prevotella oralis (SP417) -0.13206275874361 0.435939887644709 -0.30293800243221 0.761937109520708 1 FALSE Prevotella oris (SP42) -0.145152503445554 0.616729777626002 -0.235358350952818 0.813930609280825 1 FALSE Peptidiphaga sp._HMT_183 (SP428) -0.647735701803439 0.542302831745503 -1.19441696389189 0.232314904286869 1 FALSE Schaalia meyeri (SP43) -0.769124401137119 0.523973953927586 -1.46786762084631 0.142140184948888 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 0.488099923324708 0.588188726350666 0.829835563753585 0.406631760439429 1 FALSE Bifidobacterium dentium (SP46) -0.512048839605107 0.514864488043218 -0.994531282495687 0.319964283487501 1 FALSE Actinomyces dentalis (SP47) -0.313592450460243 0.621549073178433 -0.504533694912642 0.613886390319121 1 FALSE Eikenella corrodens (SP48) 0.205662023869688 0.453523072021411 0.453476430544153 0.650205711436532 1 FALSE Prevotella denticola (SP49) 0.78734085941169 0.631055339581901 1.24765739235062 0.212156550991806 1 FALSE Streptococcus sp._HMT_064 (SP5) -0.0876484979327244 0.488002430797763 -0.179606683084428 0.857461357665211 1 FALSE Treponema socranskii (SP51) -0.310310486917773 0.588947878971021 -0.526889556780359 0.598270286410968 1 FALSE Schaalia odontolytica (SP52) -0.23705966646857 0.469002596432344 -0.505454912769907 0.613239358449963 1 FALSE Actinomyces sp._HMT_169 (SP53) -0.33475963737706 0.704441721064619 -0.475212678873051 0.634635390935974 1 FALSE Treponema denticola (SP54) 0.208551253816317 0.471341439474334 0.442463225913056 0.658154035510494 1 FALSE Prevotella oulorum (SP57) 0.434273623374587 0.51837625634848 0.837757551693582 0.40216688339016 1 FALSE Rothia mucilaginosa (SP59) -0.202052456517268 0.528752715292934 -0.382130343113849 0.702364686035876 1 FALSE Capnocytophaga gingivalis (SP6) 0.418039130018524 0.542074487349348 0.771183923564942 0.44059792182433 1 FALSE Selenomonas flueggei (SP60) -0.408099905173442 0.408873677897004 -0.998107550655884 0.318227209125587 1 FALSE Alloprevotella tannerae (SP63) -0.207078174471236 0.575263886600383 -0.359970753066038 0.718869005156722 1 FALSE Tannerella forsythia (SP64) -0.407855892402571 0.50857787665191 -0.801953665557739 0.42257976116524 1 FALSE Veillonella atypica (SP65) 0.149519683658918 0.447034405168333 0.334470192741912 0.738024779764586 1 FALSE Porphyromonas gingivalis (SP67) -0.283471356212489 0.497782042572501 -0.569468827657041 0.569038019531895 1 FALSE Streptococcus constellatus (SP68) 0.248262907330743 0.445666408295844 0.557059950468467 0.577486469593119 1 FALSE Streptococcus anginosus (SP69) -0.575443157258391 0.612643662271641 -0.939278723825668 0.347587659362507 1 FALSE Actinomyces sp._HMT_171 (SP74) -0.0536680449294547 0.593483959895685 -0.0904288044092849 0.927946467847819 1 FALSE Campylobacter gracilis (SP78) 0.271384927931697 0.587324481864345 0.462069837562772 0.644031239406892 1 FALSE Veillonella parvula (SP8) -0.827423438590795 0.612088920882878 -1.35180267173815 0.176438449234794 1 FALSE Parvimonas sp._HMT_110 (SP80) 0.633180982994939 0.483517547425471 1.30953051521369 0.190354708096714 1 FALSE Selenomonas artemidis (SP81) 0.0378351993612567 0.449077440853994 0.0842509463163121 0.932856912836812 1 FALSE Haemophilus parainfluenzae (SP83) 1.03148245403965 0.658430566075103 1.56657741481885 0.117213500375243 1 FALSE Anaeroglobus geminatus (SP84) 0.470389174435737 0.489562674339475 0.960835453949575 0.336634909037979 1 FALSE Cardiobacterium hominis (SP86) 0.0139235954382655 0.454127656621412 0.0306600913537249 0.975540618673785 1 FALSE Campylobacter concisus (SP88) -0.572990696219603 0.509977748074574 -1.12356019136704 0.261199652111361 1 FALSE Streptococcus oralis (SP89) 0.206273399052486 0.648415338987323 0.318119246491976 0.750394484812225 1 FALSE Porphyromonas pasteri (SP9) 0.41792680710855 0.46113101388304 0.906308173873015 0.364772760322897 1 FALSE Prevotella loescheii (SP91) 0.441221128201799 0.479069795110079 0.920995505676614 0.357052773477199 1 FALSE Mogibacterium neglectum (SP92) -0.0669726147709083 0.436377338141023 -0.153474089777927 0.878024421587972 1 FALSE Rothia dentocariosa (SP93) -0.562213024404264 0.654846557773668 -0.858541619758471 0.390593458977206 1 FALSE Megasphaera micronuciformis (SP95) 0.315371417927052 0.470648363741864 0.67007864516878 0.502807657239389 1 FALSE Alloprevotella rava (SP96) 0.107288610946764 0.467102701612161 0.2296895534461 0.81833301304553 1 FALSE Prevotella sp._HMT_317 (SP97) 0.183698814560441 0.532604114857103 0.344906863158066 0.730164390810506 1 FALSE Actinomyces sp._HMT_525 (SP98) -0.894565818632379 0.583911356848547 -1.53202332535623 0.125516678887762 1 FALSE Schaalia sp._HMT_178 (SP99) 0.0451040946138579 0.509374291981036 0.0885480388859852 0.929441104745519 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) 0.0172089007829028 0.546619500993345 0.031482412814819 0.974884817733406 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.254416746746482 0.51148688160268 -0.4974062012095 0.618902633462867 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) -0.0808462204543281 0.489874882182569 -0.165034426942098 0.868916884792078 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.181535845174358 0.557823991739194 0.325435707073771 0.744851334655332 1 FALSE Actinomyces viscosus_nov_95.841% (SPN469) -0.0101882628720623 0.476345965049165 -0.0213883681601264 0.982935852308207 1 FALSE Actinomyces israelii_nov_97.037% (SPN579) -0.921501117600237 0.429696329235817 -2.14454035304201 0.0319896157225327 1 FALSE Prevotella veroralis_nov_96.402% (SPN611) 0.186504644704831 0.41663610377524 0.447643982398229 0.654410155609192 1 FALSE Veillonella dispar_parvula (SPP45) -0.10240677521409 0.60913620901818 -0.168118023026659 0.86649043082533 1 FALSE