taxon lfc: Smoker 12 Weeks P2 vs. Baseline B P2 se: Smoker 12 Weeks P2 vs. Baseline B P2 W: Smoker 12 Weeks P2 vs. Baseline B P2 p: Smoker 12 Weeks P2 vs. Baseline B P2 q: Smoker 12 Weeks P2 vs. Baseline B P2 diff: Smoker 12 Weeks P2 vs. Baseline B P2 Streptococcus mitis (SP1) 0.158316474021779 0.655961488090086 0.241350257440779 0.80928366207478 1 FALSE Corynebacterium durum (SP10) 0.190421353426774 0.48692469847026 0.391069407703098 0.695745932693678 1 FALSE Actinomyces sp._HMT_175 (SP100) 0.532854395093592 0.634803839600373 0.839400082124643 0.401244837794453 1 FALSE Lachnoanaerobaculum saburreum (SP101) 0.00898595022637618 0.616324419786449 0.0145799029502834 0.988367332672362 1 FALSE Treponema sp._HMT_268 (SP102) 0.209488314924608 0.399287804804307 0.524654929111294 0.599823094394514 1 FALSE Prevotella intermedia (SP104) -0.478027834199307 0.618262320853597 -0.773179632780021 0.439416078079663 1 FALSE Solobacterium moorei (SP106) 0.0310089331616723 0.517602250895767 0.0599088066329078 0.95222826581664 1 FALSE Prevotella maculosa (SP107) -0.713066638805205 0.501221836001175 -1.42265677108995 0.154835677968129 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP109) -0.194898514213242 0.612369080808535 -0.31826968460901 0.750280377812224 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) -0.207481568212066 0.648135859967992 -0.32012048866161 0.748876994552774 1 FALSE Treponema sp._HMT_238 (SP112) -0.160064534000763 0.396669882115534 -0.403520764286668 0.686565162557 1 FALSE Streptococcus salivarius (SP115) 0.062767917512196 0.579974741812453 0.108225260493315 0.9138170076615 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) -0.608346858192411 0.518202588409207 -1.17395565325123 0.240412788953416 1 FALSE Leptotrichia hongkongensis (SP119) -0.55685474400284 0.557849235056622 -0.998217276297455 0.31817401076243 1 FALSE Selenomonas sputigena (SP12) -0.93184801674254 0.638810200204398 -1.45872438549726 0.144640981560778 1 FALSE Peptidiphaga gingivicola (SP121) 0.291733069287933 0.557869589720071 0.522941337301285 0.601015076978387 1 FALSE Olsenella sp._HMT_807 (SP124) 0.0363987821100811 0.6817396762746 0.0533910279492372 0.957420353677507 1 FALSE Prevotella multiformis (SP125) -0.0255910193575362 0.436554889052152 -0.0586203934472008 0.953254466991733 1 FALSE Selenomonas noxia (SP128) -0.113335249993492 0.603846658552494 -0.187688792159871 0.851120616692053 1 FALSE Capnocytophaga leadbetteri (SP129) 0.807046445085859 0.583588201758871 1.38290397690274 0.166694310750874 1 FALSE Parvimonas micra (SP13) -0.0439467344433367 0.628687604574239 -0.0699023396096673 0.94427139094764 1 FALSE Capnocytophaga sp._HMT_864 (SP130) 0.37119418427773 0.41062513739034 0.903973357882552 0.366009528645767 1 FALSE Gemella haemolysans (SP131) 0.0251784148678352 0.475837932791763 0.0529138455190243 0.957800552722493 1 FALSE Dialister invisus (SP134) -0.396234543367088 0.655982716333418 -0.604031986668522 0.545822376157924 1 FALSE Actinomyces sp._HMT_170 (SP136) 0.24322142600682 0.559091696898078 0.43502957986364 0.663540956859433 1 FALSE Leptotrichia wadei (SP137) 0.552398205659955 0.697506493082545 0.791961381203347 0.428383194594912 1 FALSE Treponema sp._HMT_237 (SP140) -0.148977933985946 0.532046951065239 -0.280008998618768 0.779470601043543 1 FALSE Bergeyella sp._HMT_322 (SP141) 0.295171833437473 0.528228050893646 0.558796211102585 0.576300808588337 1 FALSE Gemella morbillorum (SP142) -0.559802882482974 0.596373268517092 -0.938678696774837 0.347895734244045 1 FALSE Leptotrichia sp._HMT_417 (SP143) -0.0639055557423565 0.480234659073348 -0.133071519381103 0.894136819037972 1 FALSE Stomatobaculum longum (SP145) 0.255788088082616 0.527568581376502 0.4848432926298 0.627787510374093 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) 0.188888864742191 0.479030266455809 0.394315094408791 0.693348420481485 1 FALSE Prevotella salivae (SP147) -0.602066097343614 0.530669738428024 -1.13454009856881 0.256568063614905 1 FALSE Campylobacter showae (SP151) 1.06689556954095 0.48964065954797 2.17893581494212 0.0293364367003834 1 FALSE Porphyromonas endodontalis (SP156) -0.357862535977736 0.633461513393754 -0.564931773140402 0.572120171339313 1 FALSE Scardovia wiggsiae (SP158) -0.133841057364719 0.625442027025594 -0.213994345728932 0.830551466508787 1 FALSE Capnocytophaga endodontalis (SP159) 0.343443766178165 0.514053518336763 0.66810896906102 0.50406403704287 1 FALSE Streptococcus intermedius (SP167) 0.392962239595579 0.686848000198481 0.572124020863456 0.567237956659932 1 FALSE Selenomonas infelix (SP168) 0.131326031012352 0.450643904906228 0.291418633609789 0.77073116513063 1 FALSE Mycoplasma faucium (SP169) -0.258559222059902 0.452572504113783 -0.571310054653467 0.567789487246153 1 FALSE Fusobacterium nucleatum (SP17) -0.0437037589999427 0.460828861600674 -0.0948372869879267 0.924444069599258 1 FALSE Treponema sp._HMT_257 (SP170) -0.195620616854105 0.444159300035248 -0.440428956094312 0.659626456718292 1 FALSE Lachnoanaerobaculum orale (SP174) -0.261955419020763 0.527470465372473 -0.496625756734614 0.619452986403991 1 FALSE Actinomyces sp._HMT_897 (SP175) -0.0585249778239775 0.537008597387959 -0.108983316298187 0.913215723172402 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) 0.118149248209201 0.528226810887268 0.223671433887925 0.82301297526668 1 FALSE Capnocytophaga granulosa (SP177) 0.00893710989038699 0.492895091381805 0.0181318703445236 0.985533653268712 1 FALSE Catonella morbi (SP18) 0.098370721974879 0.562058215026048 0.175018742445247 0.861064906544674 1 FALSE Selenomonas sp._HMT_137 (SP181) -0.227186686963362 0.42604429080165 -0.533246640944031 0.593862859072392 1 FALSE Leptotrichia sp._HMT_215 (SP184) 0.434736781276657 0.456652911327939 0.952007028735346 0.341093417251467 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) -0.184385968964369 0.40861015275336 -0.45125156025104 0.651808252461088 1 FALSE Prevotella veroralis (SP19) 0.123454367401611 0.522240835007551 0.23639355470896 0.813127297085347 1 FALSE Alloprevotella sp._HMT_913 (SP192) 0.351926115777609 0.386316714657287 0.910978226996502 0.362306845895539 1 FALSE Prevotella pleuritidis (SP193) 0.616561551895222 0.592885254187048 1.03993403030514 0.298370550838401 1 FALSE Lautropia mirabilis (SP194) 0.588310357111474 0.580300932022441 1.01380219235754 0.310677148981394 1 FALSE Granulicatella adiacens (SP20) -0.615071395492125 0.668536673817054 -0.920026409292305 0.357558958623789 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) 0.148122379225194 0.438420082206336 0.33785491412659 0.735472525007483 1 FALSE Haemophilus haemolyticus (SP201) 0.732801399425333 0.423991912256604 1.72833815514348 0.0839276162337919 1 FALSE Schaalia georgiae (SP205) 0.118354014311054 0.420155938442803 0.281690685486207 0.778180697298504 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) -0.338400129477788 0.610289536829842 -0.554491121108863 0.57924278048894 1 FALSE Selenomonas sp._HMT_134 (SP208) -0.0097290053903514 0.446636070513115 -0.02178284745156 0.982621176692332 1 FALSE Bulleidia extructa (SP212) 0.428590591000315 0.450390192367382 0.951598410141922 0.341300688149718 1 FALSE Streptococcus chosunense (SP213) 0.0798137201541242 0.426502343648414 0.187135478486182 0.851554411679521 1 FALSE Streptococcus cristatus (SP214) 0.257479129661009 0.626333895250286 0.411089247466192 0.68100709410356 1 FALSE Neisseria sicca (SP215) 0.734240638168727 0.47697917021409 1.53935577069155 0.123717465499145 1 FALSE Campylobacter sp._HMT_044 (SP216) 0.210936086340801 0.438074992315213 0.481506796875142 0.630156350201126 1 FALSE Peptococcus sp._HMT_167 (SP218) 0.296222933449484 0.458946639617417 0.645440902882344 0.518641503923021 1 FALSE Oribacterium sp._HMT_078 (SP220) -0.261681893502833 0.548016537028782 -0.477507293706156 0.63300092834432 1 FALSE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP222) 0.124827784772623 0.423065060227731 0.295055764485562 0.76795128094775 1 FALSE Fretibacterium sp._HMT_360 (SP223) -0.13213199110881 0.47876471328515 -0.275985233335508 0.782559408032121 1 FALSE Peptostreptococcus stomatis (SP226) -0.122968509123353 0.577145283297778 -0.213063352819446 0.831277548532948 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) -0.69222449329905 0.647546519209213 -1.06899577522924 0.285071573099885 1 FALSE Treponema sp._HMT_231 (SP231) 0.181465250849321 0.480640086451034 0.377549139084986 0.705765553843404 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP232) -0.0349630822599756 0.53012639970161 -0.0659523507594701 0.947415761394756 1 FALSE Pseudoramibacter alactolyticus (SP233) -0.459779382241406 0.438760666479609 -1.04790474025496 0.294682498083363 1 FALSE Capnocytophaga sputigena (SP24) 0.211302051311026 0.550756213751006 0.383658043314524 0.701231913668429 1 FALSE Leptotrichia hofstadii (SP241) -0.415578285798442 0.419135162227792 -0.991513772286618 0.321434770768297 1 FALSE Prevotella sp._HMT_304 (SP242) -0.211304082779495 0.4650107367808 -0.454406890134025 0.64953599409172 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP243) 0.324668161717671 0.41584210045733 0.780748657628969 0.434950336440499 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP244) 0.690274796104676 0.458827600250728 1.50443172060154 0.132470241858975 1 FALSE Filifactor alocis (SP245) -0.389010346584628 0.555040645263653 -0.700868215515716 0.483385261824789 1 FALSE Capnocytophaga ochracea (SP25) -0.578269538540076 0.506863830939405 -1.1408774965622 0.253920905224858 1 FALSE Lachnoanaerobaculum umeaense (SP251) -0.0873200448914806 0.416461194307756 -0.209671503815918 0.833924067809298 1 FALSE Phocaeicola abscessus (SP252) -0.147245769954844 0.428453465447988 -0.343668056928621 0.731095936408618 1 FALSE Kingella oralis (SP253) 0.956787198203889 0.594379498243109 1.60972442863861 0.107458029497891 1 FALSE Actinomyces israelii (SP256) 0.46772391740641 0.530066975469597 0.882386451244286 0.377567860001294 1 FALSE Arachnia propionica (SP258) -0.403375435334184 0.491119238316386 -0.821339104362929 0.411453139508149 1 FALSE Porphyromonas catoniae (SP26) 0.278267918565097 0.461172431318214 0.603392353202243 0.546247708033461 1 FALSE Shuttleworthia satelles (SP260) 0.14488947834992 0.471528132089167 0.307276424225142 0.758632978962416 1 FALSE Actinomyces sp._HMT_448 (SP264) -0.45295690391323 0.79783335687101 -0.567733725360472 0.570215787657922 1 FALSE Rothia aeria (SP269) 0.602705928932571 0.482258513062659 1.24975695111112 0.211388346135702 1 FALSE Aggregatibacter sp._HMT_458 (SP27) 0.0208359510068166 0.481701559528031 0.0432548963039098 0.965498345081173 1 FALSE Schaalia sp._HMT_180 (SP275) 0.453680812558351 0.565641219697416 0.80206462464147 0.422515576724125 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) 0.215262540986481 0.588441424305603 0.365818129205475 0.71450079102503 1 FALSE Tannerella sp._HMT_286 (SP28) -0.247718252474984 0.454256845363964 -0.545326405101291 0.585529046630789 1 FALSE Prevotella dentalis (SP292) -0.368545226077709 0.426296868522345 -0.864527171769244 0.387298360441349 1 FALSE Eggerthia catenaformis (SP294) 0.173331229427711 0.409633326548884 0.42313751883424 0.672194929935496 1 FALSE Actinomyces naeslundii (SP3) 0.535730266694349 0.475281135491894 1.1271860519772 0.25966382644218 1 FALSE Prevotella melaninogenica (SP30) -0.075076021390867 0.543219222762445 -0.138205752383138 0.890077808983337 1 FALSE Fusobacterium canifelinum (SP301) -0.2088864602718 0.396633069442222 -0.526649128287647 0.598437268806892 1 FALSE Actinomyces oris (SP31) 0.607198274756171 0.628021741602433 0.966842761218538 0.33362264419817 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP316) 0.286051957829318 0.43454283390841 0.658282533982852 0.510356599050765 1 FALSE Mogibacterium timidum (SP319) -0.307749987419503 0.57362528020151 -0.536500042870134 0.5916130062947 1 FALSE Prevotella pallens (SP32) -0.0419019679167321 0.44524130333929 -0.0941106936900715 0.925021225749304 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) 0.265568535851643 0.460175350772162 0.577102913934929 0.563869936006646 1 FALSE Lancefieldella parvula (SP338) 0.312587865207154 0.549416544317773 0.568945126316324 0.569393379727175 1 FALSE Streptococcus gordonii (SP34) 0.889259477634801 0.694239780768041 1.28091115241338 0.200224875124596 1 FALSE Lancefieldella rimae (SP341) 0.439703056562341 0.638282910472522 0.68888426957386 0.490896099286579 1 FALSE Fretibacterium fastidiosum (SP345) 0.106130047207221 0.555101370777181 0.191190389349303 0.848376432920461 1 FALSE Corynebacterium matruchotii (SP35) 1.10512135083077 0.6714394739773 1.64589869029376 0.0997846186558841 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) 0.467487624831725 0.424545686597747 1.10114797909763 0.270832258186 1 FALSE Prevotella sp._HMT_300 (SP36) -0.683101102636399 0.593432324778025 -1.15110194391907 0.249690298380595 1 FALSE Actinomyces massiliensis (SP360) 0.334328159809511 0.488837149620217 0.683925434204937 0.494022252375769 1 FALSE Actinomyces viscosus (SP366) -0.131453946613738 0.455926802785818 -0.288322480298426 0.773099900670464 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) -0.183215552045821 0.423483879644911 -0.432638787099634 0.665277206513775 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP391) 0.0329265491595441 0.456218380016256 0.0721727808475645 0.942464406406292 1 FALSE Capnocytophaga sp._HMT_338 (SP399) -0.0525109911943946 0.408721277124 -0.128476284777471 0.8977720646837 1 FALSE Streptococcus parasanguinis_clade_411 (SP4) 0.772700138133105 0.638488367913565 1.21020237323683 0.226201247674372 1 FALSE Streptococcus sanguinis (SP40) 0.512772881038142 0.769788011998452 0.666122196040607 0.505332998328618 1 FALSE Desulfobulbus sp._HMT_041 (SP406) 0.100984807652327 0.414615928995384 0.243562296067625 0.807569832338285 1 FALSE Streptococcus mutans (SP41) -0.386982512634313 0.676777174251518 -0.571801956917795 0.567456151391678 1 FALSE Prevotella oralis (SP417) -0.380672884454873 0.467901374159685 -0.813575051234958 0.415888435196914 1 FALSE Prevotella oris (SP42) -0.973851356563244 0.644148245199811 -1.5118435295297 0.130573672704256 1 FALSE Peptidiphaga sp._HMT_183 (SP428) -0.362656324577764 0.536203911334791 -0.676340319254649 0.498824599399357 1 FALSE Schaalia meyeri (SP43) 0.594870454967708 0.520867550753987 1.14207624204387 0.253422329840223 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 0.206973215485633 0.626341494325859 0.330447874459287 0.741061572589928 1 FALSE Bifidobacterium dentium (SP46) 0.170292808820263 0.465891980324946 0.365519940269178 0.714723324830038 1 FALSE Actinomyces dentalis (SP47) 0.438272385863918 0.5624897144043 0.779165155629676 0.435882432937511 1 FALSE Eikenella corrodens (SP48) 0.611666003683526 0.435712914789403 1.4038280319948 0.160370064430999 1 FALSE Saccharibacteria_(TM7)_[G-2] bacterium_HMT_350 (SP488) -0.250101269651943 0.455132431253989 -0.549513180071258 0.58265332207515 1 FALSE Prevotella denticola (SP49) -0.423117053316641 0.668104021363642 -0.63331014301191 0.526531130914691 1 FALSE Streptococcus sp._HMT_064 (SP5) 0.178082628700298 0.583266883750294 0.305319286353548 0.760122988395798 1 FALSE Treponema socranskii (SP51) 0.0102064166176917 0.602082812419241 0.0169518484951947 0.986475029579282 1 FALSE Schaalia odontolytica (SP52) 0.320203912249213 0.485585972819412 0.659417549461002 0.509627675764362 1 FALSE Actinomyces sp._HMT_169 (SP53) 0.114677531374862 0.689289259094902 0.16637069250933 0.867865236496025 1 FALSE Treponema denticola (SP54) -0.523950873002472 0.536016046776726 -0.977491021310265 0.32832612069297 1 FALSE Leptotrichia sp._HMT_392 (SP56) 0.0373338632617395 0.434951044060747 0.0858346330501628 0.931597874870708 1 FALSE Prevotella oulorum (SP57) -0.0625174113779148 0.570411729797135 -0.109600501027826 0.912726213290332 1 FALSE Rothia mucilaginosa (SP59) 1.07051410893215 0.572505926448179 1.86987428335215 0.061501277757483 1 FALSE Capnocytophaga gingivalis (SP6) 0.0482345833649211 0.579624033695484 0.0832170175163268 0.933678981651029 1 FALSE Alloprevotella tannerae (SP63) -0.609509805211705 0.633586074997216 -0.962000001679934 0.336049603091626 1 FALSE Tannerella forsythia (SP64) -0.270359061829486 0.548578775320605 -0.492835439489033 0.62212886757134 1 FALSE Veillonella atypica (SP65) -0.677652981838975 0.443897096123094 -1.52659926761733 0.126860689265213 1 FALSE Porphyromonas gingivalis (SP67) -0.615766798027324 0.567174369301707 -1.08567458502302 0.277622988682312 1 FALSE Streptococcus constellatus (SP68) -0.120772796388224 0.518901279058342 -0.23274715492587 0.815957750223066 1 FALSE Streptococcus anginosus (SP69) -0.341340598257883 0.690062896908247 -0.494651429293218 0.620846192342159 1 FALSE Prevotella sp._HMT_314 (SP70) -0.252974430135689 0.47610758457159 -0.531338794703975 0.59518402648964 1 FALSE Actinomyces sp._HMT_171 (SP74) 0.0109119161498625 0.507854488877457 0.0214863044215319 0.982857728430663 1 FALSE Capnocytophaga sp._HMT_380 (SP75) -0.336607163585152 0.481317003840165 -0.699346087712563 0.48433577126308 1 FALSE Campylobacter gracilis (SP78) -0.731041337908765 0.579931901344049 -1.26056410453452 0.207465938173845 1 FALSE Veillonella parvula (SP8) 0.165442857807063 0.648669977612212 0.255049352547604 0.798684981512136 1 FALSE Parvimonas sp._HMT_110 (SP80) -0.269851846699595 0.550749659352565 -0.489971881266019 0.624153796483706 1 FALSE Selenomonas artemidis (SP81) 0.090833306640048 0.465881184332793 0.194970970484962 0.845415673675999 1 FALSE Haemophilus parainfluenzae (SP83) 1.67201624329046 0.640721315919773 2.60958423224961 0.00906523253134278 1 FALSE Anaeroglobus geminatus (SP84) -0.615437261555354 0.557458756582165 -1.10400501254776 0.269590963312669 1 FALSE Cardiobacterium hominis (SP86) -0.0343205429012217 0.494773376304121 -0.0693661877233386 0.944698142355648 1 FALSE Leptotrichia buccalis (SP87) -0.0349668361516717 0.519820471379691 -0.0672671394777198 0.946369036513476 1 FALSE Campylobacter concisus (SP88) 0.780986683797623 0.531481429826666 1.46945243985727 0.141710112742175 1 FALSE Streptococcus oralis (SP89) -0.710754089566072 0.649672783642168 -1.09401856975056 0.27394683394235 1 FALSE Porphyromonas pasteri (SP9) -0.136078245273957 0.488702367913354 -0.278448098901137 0.7806684011858 1 FALSE Prevotella loescheii (SP91) 0.188294470889771 0.522267548531204 0.360532587979704 0.718448891174094 1 FALSE Mogibacterium neglectum (SP92) 0.51386953841343 0.450807304400344 1.1398873385536 0.254333240653596 1 FALSE Rothia dentocariosa (SP93) 0.108645392904034 0.667673564034256 0.162722322339034 0.870737070554388 1 FALSE Mogibacterium vescum (SP94) -0.274065189129852 0.438497145319441 -0.625010201446574 0.531964362685569 1 FALSE Megasphaera micronuciformis (SP95) 0.122302080453398 0.467934078664788 0.261366047120092 0.793810237717099 1 FALSE Alloprevotella rava (SP96) -0.278413421297438 0.503748659141085 -0.552683200729797 0.580480358686495 1 FALSE Prevotella sp._HMT_317 (SP97) -0.624785538377524 0.659351755209938 -0.947575453376311 0.343345627347058 1 FALSE Actinomyces sp._HMT_525 (SP98) -0.125002673627829 0.514820858457504 -0.242808098339993 0.808154061716631 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.56907543841189 0.505096534077882 -1.12666668649946 0.259883432426642 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) 0.0485783149194084 0.553188156875594 0.0878151752087005 0.930023576289483 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.371255483098684 0.544660852990845 0.681626889577328 0.495474907552485 1 FALSE Prevotella veroralis_nov_96.402% (SPN611) -0.275025128862902 0.429067385278496 -0.64098353382043 0.521533381230614 1 FALSE Veillonella dispar_parvula (SPP45) -0.930340452116118 0.527355543549748 -1.76416169981601 0.0777047589850455 1 FALSE