GroupBaseline.A.Plaque 2...1 GroupBaseline.A.Plaque 2...2 GroupBaseline.A.Plaque 2...3 GroupBaseline.A.Plaque 2...4 GroupBaseline.A.Plaque 2...5 GroupBaseline.A.Plaque 2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance StreptococcusStreptococcus gordonii (SP1) 0.168643354059434 0.398970540403077 0.422696256944323 0.672516886887615 1 FALSE LactobacillusLactobacillus vaginalis (SP11) 0.349399757057404 0.264604062085355 1.32046255943227 0.186680628524178 1 FALSE ActinomycesActinomyces sp._HMT_170 (SP13) 0.458589777931251 0.274938746311276 1.66797071741955 0.0953215398822293 1 FALSE FretibacteriumFretibacterium fastidiosum (SP14) -0.298417433483606 0.313224388999581 -0.952727322533001 0.34072824607955 1 FALSE SelenomonasSelenomonas dianae (SP15) 0.144513760636721 0.228977510194379 0.631126439072743 0.527957855095867 1 FALSE ColibacterColibacter massiliensis (SP17) 0.178093347327131 0.23728313593915 0.750552063560057 0.452922279589582 1 FALSE StreptococcusStreptococcus intermedius (SP18) -0.528630851889778 0.384057003687121 -1.37643851515448 0.168685910639587 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP19) 0.176332346143819 0.38108114504393 0.462716007960698 0.643567942429162 1 FALSE FusobacteriumFusobacterium nucleatum (SP20) 0.655215365992857 0.345387608216081 1.8970436414237 0.057822178484216 1 FALSE SelenomonasSelenomonas infelix (SP21) 0.0367324102499893 0.259024465831542 0.14181058199297 0.887229625326433 1 FALSE PeptococcusPeptococcus sp._Oral_Taxon_167 (SP22) -0.203136155631685 0.233481484110655 -0.870031113625318 0.384283401187838 1 FALSE DialisterDialister invisus (SP25) 0.243855042590757 0.370898748324754 0.657470653897274 0.510878334405859 1 FALSE VeillonellaVeillonella atypica (SP27) -0.31764539240368 0.284667232020208 -1.11584810850703 0.264487157004829 1 FALSE SelenomonasSelenomonas noxia (SP28) 0.227318131174024 0.331762897593046 0.685182498776164 0.493228766196461 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP29) -0.31070965535203 0.268983125446717 -1.15512694276273 0.248038446461462 1 FALSE StreptococcusStreptococcus anginosus (SP3) -0.438191149124133 0.393373793968134 -1.11393070876407 0.265308914007708 1 FALSE StreptococcusStreptococcus mutans (SP31) -0.736417341222198 0.462239920315827 -1.59314959365482 0.111126635986999 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP32) 0.0109322390876902 0.288337484189992 0.0379147342510857 0.969755665262659 1 FALSE MegasphaeraMegasphaera micronuciformis (SP33) 0.113655713637409 0.295692288023897 0.384371585735179 0.700703057326383 1 FALSE SelenomonasSelenomonas artemidis (SP36) 0.0207266226304312 0.226616496306184 0.0914612262049415 0.927126114069109 1 FALSE ActinomycesActinomyces massiliensis (SP37) 0.235935814968697 0.269038448901157 0.87695946780967 0.380508653829834 1 FALSE ActinomycesActinomyces gerencseriae (SP38) -0.703122880357503 0.362189467939508 -1.94131233124354 0.0522204047170662 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP41) -0.188837082900652 0.337472697216292 -0.55956254967679 0.575777855419996 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_171 (SP47) -0.656653970350866 0.325467261246347 -2.01757303587547 0.0436357474555349 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP48) -0.1182811406321 0.337236661773297 -0.350736304914599 0.725786186271512 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP5) 0.167767536341304 0.344089941743683 0.487568847526141 0.62585526587757 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP53) -0.0138658700836708 0.310760550980961 -0.0446191449973337 0.964410882355203 1 FALSE ActinomycesActinomyces naeslundii (SP60) 0.221147411703104 0.29425980817681 0.751537945577075 0.452328973154474 1 FALSE StreptococcusStreptococcus sp._str._2136FAA (SP61) -0.320651299665552 0.302297532437146 -1.06071424758395 0.288819783059743 1 FALSE StreptococcusStreptococcus constellatus (SP64) -0.0803313993550263 0.252771971104213 -0.317801847270112 0.750635249376768 1 FALSE DialisterDialister pneumosintes (SP67) 0.783764974591297 0.293992029241944 2.66593953792635 0.00767734990934446 0.951991388758713 FALSE VeillonellaVeillonella parvula (SP7) 0.0711223554626065 0.290918824561074 0.24447491691166 0.80686302608829 1 FALSE StreptococcusStreptococcus pyogenes_nov_91.53% (SPN110) -0.475438801105508 0.434702849511598 -1.09370987938008 0.274082239975098 1 FALSE GeosporobacterGeosporobacter subterraneus_nov_88.43% (SPN123) 0.262034938807035 0.265759212840061 0.985986284376652 0.324139843381767 1 FALSE Candidatus_AmoebophilusCandidatus_Amoebophilus asiaticus_nov_80.21% (SPN146) -0.255610767494822 0.229330967655992 -1.11459333254221 0.265024728818086 1 FALSE FusobacteriumFusobacterium hwasookii_nov_87.47% (SPN152) 0.292981681353772 0.385957717252489 0.75910305263337 0.447790913219319 1 FALSE ThermotaleaThermotalea metallivorans_nov_88.34% (SPN156) -0.106944649562037 0.252607696024337 -0.42336259443075 0.672030731663915 1 FALSE BacteroidesBacteroides capillosus_nov_81.31% (SPN163) -0.441167674518108 0.25964293354639 -1.69913222167198 0.0892942734565357 1 FALSE StreptococcusStreptococcus rifensis_nov_90.02% (SPN175) -0.0313405599264869 0.213153202489435 -0.147033023949243 0.883105954243035 1 FALSE WinogradskyellaWinogradskyella eckloniae_nov_83.62% (SPN202) 0.237925388863841 0.238531789233891 0.997457779644393 0.318542357492701 1 FALSE VagococcusVagococcus lutrae_nov_87.66% (SPN209) -0.0134251189830388 0.387507236231448 -0.0346448213808846 0.972362960641264 1 FALSE FusobacteriumFusobacterium periodonticum_nov_86.34% (SPN212) 0.277022375551121 0.251139677590754 1.10306096674435 0.270000690200855 1 FALSE ArenibacterArenibacter algicola_nov_84.04% (SPN213) 0.221478536009734 0.236343912294967 0.937102774762059 0.348705694276414 1 FALSE FusobacteriumFusobacterium sp._HMT_248_nov_86.74% (SPN215) -0.395838750861403 0.227884445043147 -1.73701522623212 0.0823844833181273 1 FALSE AlicyclobacillusAlicyclobacillus acidiphilus_nov_83.26% (SPN217) -0.231721993963275 0.230067715664912 -1.00719039737315 0.313843286756831 1 FALSE BowdeniellaBowdeniella nasicola_nov_86.78% (SPN218) -0.37238694154231 0.390843745038521 -0.952777027314606 0.34070305622209 1 FALSE ThermotaleaThermotalea metallivorans_nov_87.32% (SPN219) 0.169810763442046 0.248633242872015 0.682976907997204 0.494621434318097 1 FALSE TessaracoccusTessaracoccus lapidicaptus_nov_87.1% (SPN22) -0.322029131461301 0.259019895032114 -1.24326021914794 0.213771958341059 1 FALSE IsoptericolaIsoptericola cucumis_nov_88.91% (SPN221) -0.167638901790847 0.228913123608936 -0.732325430486164 0.463969961090353 1 FALSE ClostridiumClostridium acetobutylicum_nov_85.54% (SPN222) -0.0997681293073783 0.218059333082664 -0.457527444007899 0.64729198103311 1 FALSE StreptococcusStreptococcus rifensis_nov_90.82% (SPN226) -0.413958595284131 0.37531736669499 -1.1029561433019 0.270046211127459 1 FALSE EnterococcusEnterococcus sulfureus_nov_88.64% (SPN227) -0.17769214727593 0.235410781134668 -0.754817372507168 0.450358568655494 1 FALSE ChryseobacteriumChryseobacterium taeanense_nov_85.32% (SPN228) -0.0482669149804251 0.221861959766452 -0.217553811528729 0.827776775494242 1 FALSE ArenibacterArenibacter algicola_nov_85.44% (SPN229) -0.0747666313218811 0.206517101199643 -0.362036029401764 0.717325106512112 1 FALSE Bacteroidetes_[G]Bacteroidetes_[G] sp._Oral_Taxon_B68_nov_82.03% (SPN235) -0.0566528039767457 0.363321217210102 -0.155930348389162 0.876087923338187 1 FALSE CampylobacterCampylobacter curvus_nov_91.68% (SPN242) 0.40453644446044 0.30824579634868 1.31238268048541 0.189391047630142 1 FALSE CoprococcusCoprococcus eutactus_nov_89.48% (SPN246) -0.446673772088585 0.286883220840777 -1.55698813886537 0.119473301533264 1 FALSE StreptococcusStreptococcus rifensis_nov_90.65% (SPN249) -0.525511472192268 0.340290620072942 -1.54430196189253 0.122515197525768 1 FALSE StreptococcusStreptococcus pyogenes_nov_89.52% (SPN254) 0.303783686413908 0.328185658424946 0.92564583069184 0.354630067472509 1 FALSE CorynebacteriumCorynebacterium terpenotabidum_nov_92.31% (SPN261) -0.671229275392381 0.334127779943573 -2.00889993494626 0.0445477468365136 1 FALSE GeosporobacterGeosporobacter subterraneus_nov_88.04% (SPN273) 0.22737705556949 0.36051257953193 0.630704914277066 0.528233485251234 1 FALSE StreptococcusStreptococcus pyogenes_nov_89.52% (SPN293) 0.142643912532256 0.405801302374227 0.351511716935571 0.725204483789394 1 FALSE BowdeniellaBowdeniella nasicola_nov_81.4% (SPN31) 0.183482506670301 0.255202783379198 0.718967498084337 0.472160945831746 1 FALSE ClostridiumClostridium diolis_nov_84.18% (SPN320) 0.037124893748792 0.341902344289686 0.108583326112958 0.913532986382512 1 FALSE KocuriaKocuria indica_nov_89.33% (SPN328) -0.51998292998031 0.350168676074586 -1.48494986990085 0.137557104051392 1 FALSE StreptococcusStreptococcus rifensis_nov_91.68% (SPN349) -0.0629145989247689 0.464393586136747 -0.135476890299348 0.892234834662673 1 FALSE NatronincolaNatronincola ferrireducens_nov_85.53% (SPN356) 0.150271287613705 0.354121390082866 0.424349649080902 0.6713108354776 1 FALSE StreptococcusStreptococcus rifensis_nov_90.59% (SPN362) -0.173440936432014 0.331603206776799 -0.523037572880761 0.600948106707666 1 FALSE StreptococcusStreptococcus rifensis_nov_90.67% (SPN37) -0.288336032769436 0.400018023882058 -0.720807602545553 0.471027897228174 1 FALSE ThermomonosporaThermomonospora curvata_nov_84.68% (SPN38) 0.0246079271242141 0.259084354331082 0.0949803672543182 0.924330421073323 1 FALSE IsoptericolaIsoptericola jiangsuensis_nov_88.29% (SPN389) 0.0359451247551229 0.333534743646769 0.107770256142163 0.914177937599814 1 FALSE ArenibacterArenibacter algicola_nov_84.87% (SPN397) 0.00483334266912194 0.32681195130602 0.014789369390583 0.988200220652813 1 FALSE CellulosilyticumCellulosilyticum lentocellum_nov_84.21% (SPN4) 0.157057992233049 0.282278805838795 0.556393143886059 0.577942124815777 1 FALSE GeosporobacterGeosporobacter subterraneus_nov_84.49% (SPN405) 0.0351065318850258 0.32231992658719 0.108918279601088 0.91326730787619 1 FALSE StreptococcusStreptococcus rifensis_nov_90.43% (SPN420) 0.269541121593889 0.264091962095391 1.02063356815279 0.307428079329578 1 FALSE StreptococcusStreptococcus pyogenes_nov_85.12% (SPN443) -0.565109428343604 0.318010282752189 -1.77701621297563 0.0755655723312416 1 FALSE ClostridiumClostridium acetobutylicum_nov_85.27% (SPN454) -0.183384859584391 0.24641209447916 -0.744220205473317 0.456743266040947 1 FALSE OceanobacillusOceanobacillus senegalensis_nov_85.28% (SPN458) 0.497889817926592 0.316355372724284 1.57383076392548 0.115526579791875 1 FALSE AnaerovibrioAnaerovibrio lipolyticus_nov_84.95% (SPN471) 0.0336368255508869 0.328198681536172 0.10248921596347 0.918368372189717 1 FALSE SneathiaSneathia sanguinegens_nov_85.05% (SPN483) 0.226360943809248 0.394388487343069 0.573954238203565 0.565998768622621 1 FALSE LacticaseibacillusLacticaseibacillus porcinae_nov_86.26% (SPN484) -0.00577152940164006 0.250835427590285 -0.0230092274328461 0.981642912471746 1 FALSE FusobacteriumFusobacterium nucleatum_nov_86.73% (SPN504) 0.0357341983096654 0.276395588230535 0.129286427972433 0.897131010210822 1 FALSE StreptosporangiumStreptosporangium subfuscum_nov_84.24% (SPN510) 0.179669884016342 0.24515992671075 0.732868076879157 0.463638895161037 1 FALSE BowdeniellaBowdeniella nasicola_nov_87.61% (SPN515) 0.114850703049876 0.300487596827039 0.382214454981262 0.702302300812431 1 FALSE LeptotrichiaLeptotrichia sp._HMT_498_nov_84.5% (SPN52) 0.43147748771075 0.236496746137634 1.82445422508961 0.0680834306053554 1 FALSE AnaerovibrioAnaerovibrio lipolyticus_nov_85.06% (SPN530) 0.0367155761128805 0.315021662605973 0.116549369364494 0.907217161564879 1 FALSE MarinoscillumMarinoscillum pacificum_nov_80.04% (SPN536) -0.0156647050451941 0.29828288438002 -0.0525162718529867 0.95811733016157 1 FALSE KocuriaKocuria indica_nov_89.81% (SPN541) 0.69684563914462 0.389484902610572 1.78914672808606 0.0735911883685616 1 FALSE PeptostreptococcusPeptostreptococcus anaerobius_nov_95.34% (SPN544) 0.277849701237375 0.296763582740584 0.936266164033535 0.349136164704315 1 FALSE NatronincolaNatronincola ferrireducens_nov_83.89% (SPN551) 0.24059124134389 0.30366858611937 0.792282285166355 0.428196098559355 1 FALSE ThermomonosporaThermomonospora curvata_nov_84.47% (SPN565) 0.0108289384760621 0.294034004566931 0.0368288643757769 0.970621459211389 1 FALSE ActinomycesActinomyces slackii_nov_90.12% (SPN571) -0.186879651517173 0.284525118221341 -0.656812490529546 0.511301491839718 1 FALSE ThermincolaThermincola potens_nov_80.71% (SPN578) -0.248335647861353 0.297564617323045 -0.834560406057125 0.403965262965257 1 FALSE AlkaliphilusAlkaliphilus peptidifermentans_nov_82.53% (SPN585) 0.0312451235642669 0.31357661375633 0.0996411154198715 0.920629250849226 1 FALSE ActinomycesActinomyces israelii_nov_96.89% (SPN586) 0.214347189603405 0.239780502333463 0.893930855584379 0.371358887492597 1 FALSE IsoptericolaIsoptericola cucumis_nov_86.73% (SPN600) -0.683932448383097 0.258118493479117 -2.64968402366113 0.0080567082122436 0.990975110105962 FALSE ClostridiumClostridium acetobutylicum_nov_85.65% (SPN613) 0.407080973687477 0.357529154403354 1.13859518496279 0.254872037664831 1 FALSE CellulosimicrobiumCellulosimicrobium arenosum_nov_91.54% (SPN614) -0.0407241928391558 0.291533973745814 -0.139689355295047 0.888905437184419 1 FALSE SneathiaSneathia sanguinegens_nov_85.47% (SPN62) 0.32978220120766 0.279532547049641 1.17976316063508 0.238094425303219 1 FALSE CampylobacterCampylobacter rectus_nov_94.88% (SPN630) -0.223713737574293 0.291954340672627 -0.766262755535281 0.443519974542344 1 FALSE AlkaliphilusAlkaliphilus peptidifermentans_nov_87.82% (SPN635) -0.173158178059013 0.308182034897213 -0.561869799181401 0.574204731649082 1 FALSE AnaerovibrioAnaerovibrio lipolyticus_nov_85.17% (SPN64) -0.228173708112285 0.240063076214148 -0.95047398254925 0.341871467722281 1 FALSE ChryseobacteriumChryseobacterium taeanense_nov_85.77% (SPN645) 0.448241804699305 0.296331096809916 1.51263842885458 0.130371527198639 1 FALSE CorynebacteriumCorynebacterium terpenotabidum_nov_92.36% (SPN66) -0.0231502539537285 0.239655405969622 -0.0965980878255799 0.92304557508863 1 FALSE FlavobacteriumFlavobacterium subsaxonicum_nov_81.99% (SPN662) 0.361899277888094 0.2922491545239 1.23832446488224 0.215595775925857 1 FALSE ArenibacterArenibacter algicola_nov_87.21% (SPN667) 0.113765136015668 0.289205009952607 0.393371940666972 0.694044790783542 1 FALSE CampylobacterCampylobacter rectus_nov_94.49% (SPN676) 0.155986939177325 0.283986064522383 0.549276738066948 0.582815548685671 1 FALSE CorynebacteriumCorynebacterium terpenotabidum_nov_92.32% (SPN689) -0.133114076497733 0.405022571768254 -0.328658415052232 0.742413889644328 1 FALSE BowdeniellaBowdeniella nasicola_nov_87.76% (SPN690) -0.587826161381903 0.266574839285795 -2.20510743983491 0.0274465561420904 1 FALSE BhargavaeaBhargavaea cecembensis_nov_82.42% (SPN700) 0.0125924095092128 0.287922351961688 0.0437354356944416 0.965115292630672 1 FALSE DermacoccusDermacoccus sp._str._Ellin185_nov_89.57% (SPN710) -0.034265751985394 0.281827245254196 -0.121584241986568 0.903228293963946 1 FALSE AlistipesAlistipes indistinctus_nov_86.39% (SPN721) 0.197897395606213 0.257051067072267 0.769875798844966 0.441373571030458 1 FALSE AnaerovibrioAnaerovibrio lipolyticus_nov_86.86% (SPN729) 0.198518797733309 0.283750646733226 0.699624124275392 0.484162072671483 1 FALSE StreptococcusStreptococcus pyogenes_nov_90.1% (SPN736) -0.139278237704696 0.211542471746296 -0.658393733206131 0.510285161225485 1 FALSE AlkaliphilusAlkaliphilus peptidifermentans_nov_86.76% (SPN750) 0.347681383086882 0.282249226269181 1.23182404317841 0.218014819919654 1 FALSE AlistipesAlistipes indistinctus_nov_85.71% (SPN76) -0.100135640538436 0.266958930825556 -0.375097548633314 0.707587920069184 1 FALSE FusobacteriumFusobacterium sp._HMT_248_nov_86.16% (SPN770) -0.173216948375249 0.231723327002414 -0.747516232465644 0.454752008144278 1 FALSE SelenomonasSelenomonas dianae_nov_87.22% (SPN779) 0.582348903811013 0.2695888570919 2.16013714399366 0.030762054314577 1 FALSE GeosporobacterGeosporobacter subterraneus_nov_86.78% (SPN90) 0.0521618871208382 0.23749064925008 0.21963764588437 0.826153370055364 1 FALSE GramellaGramella marina_nov_84.87% (SPN93) -0.403491135194855 0.266373690328429 -1.51475596068577 0.129834216908709 1 FALSE CellulomonasCellulomonas gilvus_nov_87.87% (SPN96) 0.0156080774147097 0.389929821844443 0.0400279141022876 0.968070871886181 1 FALSE StreptococcusStreptococcus gordonii_sp._str._2136FAA (SPP14) -0.250570793520713 0.278108179243856 -0.900983186477959 0.367597259361654 1 FALSE multigenusmultigenus multispecies_sppn1_2_nov_97.18% (SPPN1) -0.0945609981960057 0.254313567927885 -0.371828365141809 0.710020643129763 1 FALSE MycobacteriumMycobacterium multispecies_sppn9_2_nov_83.57% (SPPN9) -0.388638872804447 0.513590103872908 -0.756710205032725 0.44922349955672 1 FALSE