GroupBaseline.B.Plaque 1...1 GroupBaseline.B.Plaque 1...2 GroupBaseline.B.Plaque 1...3 GroupBaseline.B.Plaque 1...4 GroupBaseline.B.Plaque 1...5 GroupBaseline.B.Plaque 1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance PorphyromonasPorphyromonas catoniae (SP10) 0.0440592488330227 0.231383843355239 0.1904162719148 0.848982947795459 1 FALSE StreptococcusStreptococcus mutans (SP100) 0.259127225151717 0.485290617976309 0.533962981259133 0.59336714616703 1 FALSE TannerellaTannerella forsythia (SP101) 0.392695581622359 0.290792072220925 1.35043427636505 0.176876722328701 1 FALSE PrevotellaPrevotella oralis (SP104) 0.426139687999334 0.260044660075035 1.63871731831129 0.101272145571063 1 FALSE StomatobaculumStomatobaculum longum (SP105) -0.356481678237482 0.300521147919836 -1.18621162172778 0.235538737803278 1 FALSE GranulicatellaGranulicatella adiacens (SP107) -0.245517184682948 0.39972496803119 -0.614215283804314 0.539073074978465 1 FALSE GranulicatellaGranulicatella paradiacens (SP108) -0.0477385214809618 0.358003668429111 -0.133346458963491 0.893919386702688 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_171 (SP109) 0.368702267917455 0.366957667804905 1.00475422716464 0.31501520944509 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP110) -0.314991943222925 0.42413780482943 -0.742664152160644 0.457685038253163 1 FALSE PrevotellaPrevotella salivae (SP111) -0.186232438644566 0.250157956697826 -0.744459385193663 0.456598603602431 1 FALSE VeillonellaVeillonella atypica (SP116) -0.113786527671568 0.274098674230355 -0.415129799482141 0.678046885724314 1 FALSE CatonellaCatonella morbi (SP118) -0.142294368490663 0.294402672089237 -0.483332462578778 0.62885969389232 1 FALSE PrevotellaPrevotella oris (SP12) -0.0980716858232774 0.396008506687306 -0.24765045236949 0.80440487101959 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP120) -0.0534685029532275 0.329210715920896 -0.162414223983144 0.870979670431772 1 FALSE BifidobacteriumBifidobacterium dentium (SP121) 0.319027678545733 0.33223229190552 0.960254876839177 0.336926953998748 1 FALSE CampylobacterCampylobacter showae (SP122) -0.168595173988262 0.233053701062266 -0.7234177068195 0.469423295886103 1 FALSE FretibacteriumFretibacterium fastidiosum (SP124) 0.216750346607723 0.3098922457772 0.699437787041492 0.484278479940878 1 FALSE PrevotellaPrevotella sp._HMT_300 (SP126) -0.00329573247935157 0.325081420550942 -0.0101381754569856 0.991911044895706 1 FALSE StreptococcusStreptococcus sp._str._2136FAA (SP128) -0.197219214953026 0.379561907457838 -0.519596964495003 0.60334451423643 1 FALSE PrevotellaPrevotella veroralis (SP129) 0.176110263971348 0.268343804231008 0.656285933174519 0.511640166678369 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP130) -0.331601592798711 0.363446410263042 -0.91238098227113 0.36156819720899 1 FALSE LachnoanaerobaculumLachnoanaerobaculum orale (SP139) 0.0204242507358016 0.267702880637777 0.0762944750058075 0.939184821340875 1 FALSE HaemophilusHaemophilus parainfluenzae (SP140) 0.312678406460891 0.429840344549398 0.727429173240292 0.466963088594018 1 FALSE OribacteriumOribacterium sp._Oral_Taxon_78 (SP142) -0.274130246533745 0.329786428820138 -0.831235680359827 0.405840501940477 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP144) 0.217827392028717 0.297263726380214 0.732774882025482 0.463695743527687 1 FALSE LeptotrichiaLeptotrichia buccalis (SP146) -0.140584181946635 0.241970919016651 -0.580996189616325 0.561243021629939 1 FALSE ActinomycesActinomyces viscosus (SP147) 0.351952782219227 0.431237075660926 0.81614685305018 0.414416149457726 1 FALSE StreptococcusStreptococcus cristatus (SP15) 0.333872750353663 0.41124108728291 0.811866228055121 0.416868394850152 1 FALSE PorphyromonasPorphyromonas gingivalis (SP152) 0.518655135838196 0.296855773659722 1.74716202903541 0.0806092361825678 1 FALSE Peptostreptococcaceae_[XI][G-5]Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP153) 0.12424978538986 0.23070201174936 0.538572613423276 0.590181788741188 1 FALSE PorphyromonasPorphyromonas endodontalis (SP155) 0.298771842801963 0.369316951128187 0.8089849163145 0.418523822510606 1 FALSE BergeyellaBergeyella sp._HMT_322 (SP158) -0.00279999419013946 0.321307915577301 -0.00871436417963327 0.993047031365541 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_155 (SP165) -0.291632995935262 0.24207142043715 -1.20473947485668 0.228303891859384 1 FALSE ScardoviaScardovia wiggsiae (SP166) 0.0792761691088292 0.395329181368607 0.200532044799677 0.841064498815697 1 FALSE StreptococcusStreptococcus sanguinis (SP17) -0.44114717369388 0.483751746378906 -0.91192884986165 0.361806173351891 1 FALSE ActinomycesActinomyces odontolyticus (SP170) -0.204350175680844 0.344872821372241 -0.592537779195647 0.553490530268125 1 FALSE ActinomycesActinomyces sp._HMT_171 (SP171) -0.174166911093018 0.383567434073803 -0.454071163558442 0.649777607548331 1 FALSE ActinomycesActinomyces naeslundii (SP172) -0.117752313576466 0.338317988595028 -0.34805218033327 0.727800996173994 1 FALSE StreptococcusStreptococcus anginosus (SP175) 0.0309736360602552 0.41816926674881 0.074069613726206 0.940954993558244 1 FALSE KingellaKingella oralis (SP176) 0.308174986929246 0.34357353724924 0.89696950875959 0.369735187583675 1 FALSE LeptotrichiaLeptotrichia sp._AF189244.1 (SP18) -0.463879895263033 0.378501080393115 -1.22557086172975 0.220360208581842 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_178 (SP181) 0.328662492939305 0.283956677782152 1.15743885830166 0.247093105803746 1 FALSE GemellaGemella haemolysans (SP183) 0.437268900352221 0.329983938177676 1.32512177037168 0.185130766551214 1 FALSE PorphyromonasPorphyromonas pasteri (SP184) 0.159870582223606 0.285738913842334 0.559498809853458 0.575821343239772 1 FALSE OlsenellaOlsenella sp._Oral_Taxon_807 (SP189) -0.489398149081681 0.438085287509311 -1.11712984442848 0.263938811553651 1 FALSE RothiaRothia dentocariosa (SP193) 0.0955628460473701 0.499691455825352 0.19124370635781 0.84833466276682 1 FALSE StreptococcusStreptococcus vestibularis (SP198) 0.0776581932455885 0.323047384405625 0.240392577047085 0.810025932176611 1 FALSE EikenellaEikenella corrodens (SP200) 0.0862660408594166 0.25270084305112 0.341376149829328 0.732820427562913 1 FALSE ActinomycesActinomyces sp._str._ChDCB197 (SP201) 1.00026423082526 0.468586252688515 2.13464271537256 0.0327902054961575 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP202) 0.178626103278246 0.352605948184259 0.506588457166079 0.612443609082545 1 FALSE CampylobacterCampylobacter gracilis (SP205) -0.726809156425601 0.366151270479638 -1.98499695350919 0.0471448104456611 1 FALSE SelenomonasSelenomonas sputigena (SP21) -0.355212963291835 0.383748033997403 -0.925641128611592 0.354632511887285 1 FALSE StreptococcusStreptococcus oralis_subsp._tigurinus_clade_070 (SP212) 0.096858733902855 0.451860705362542 0.214355293021424 0.830270002338229 1 FALSE LancefieldellaLancefieldella rimae (SP217) 0.0131071946110922 0.375391819333407 0.0349160368874499 0.972146692823392 1 FALSE TannerellaTannerella sp._HMT_286 (SP218) -0.129381580016214 0.252287142209177 -0.512834617266942 0.608067012398501 1 FALSE PrevotellaPrevotella pleuritidis (SP233) 0.318922344747813 0.354564950552849 0.899475101107818 0.368399652377225 1 FALSE FilifactorFilifactor alocis (SP234) 0.220248169422893 0.278934742649449 0.789604648495472 0.429758692648541 1 FALSE CorynebacteriumCorynebacterium matruchotii (SP24) 0.275042547665998 0.446564822445578 0.615907330451486 0.537955683203125 1 FALSE CardiobacteriumCardiobacterium hominis (SP242) 0.112117281531888 0.248464676967597 0.451240324782703 0.651816349292386 1 FALSE LautropiaLautropia mirabilis (SP245) 0.0200320150787299 0.326776426322857 0.0613018977658387 0.95111877944814 1 FALSE ActinomycesActinomyces oris (SP249) 0.157074265954707 0.417719966830338 0.376027670275347 0.706896325186139 1 FALSE AbiotrophiaAbiotrophia defectiva (SP256) 0.0427878273434155 0.27447345879909 0.155890582392287 0.876119268715684 1 FALSE LeptotrichiaLeptotrichia sp._HMT_215 (SP259) -0.19994134610564 0.262784529210719 -0.760856610189991 0.446742717278278 1 FALSE ArachniaArachnia propionica (SP260) -0.126803146034329 0.323879914204174 -0.391512843103917 0.695418197350716 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_180 (SP262) 0.0688814059819965 0.402905620345709 0.170961640899657 0.864253927606312 1 FALSE CapnocytophagaCapnocytophaga endodontalis (SP268) 0.0983952422510256 0.269790047056951 0.364710423250918 0.715327577157736 1 FALSE AlloprevotellaAlloprevotella tannerae (SP27) 0.328100116033334 0.374541742150796 0.876004138148202 0.38102778414429 1 FALSE LeptotrichiaLeptotrichia sp._HMT_498 (SP271) 0.00543667753600591 0.263521189209926 0.0206308932966865 0.983540096419722 1 FALSE ActinomycesActinomyces sp._HMT_414 (SP272) 0.142120438191767 0.307675736050585 0.461916301935494 0.644141343089164 1 FALSE ShuttleworthiaShuttleworthia satelles (SP278) 0.0779818394318377 0.252767921662162 0.308511613811758 0.757693064404736 1 FALSE SolobacteriumSolobacterium moorei (SP279) -0.27725492177985 0.284129664722408 -0.975804205628178 0.329161500249433 1 FALSE DialisterDialister invisus (SP28) -0.836765536220003 0.378569104377648 -2.21033762804181 0.0270817390129694 1 FALSE ActinomycesActinomyces dentalis (SP286) -0.45513738555908 0.420645792978796 -1.08199676106596 0.279253967153846 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP287) -0.0334367742357987 0.299968620952932 -0.111467573273423 0.91124557810187 1 FALSE PrevotellaPrevotella sp._HMT_317 (SP29) -0.389395176853729 0.346393062552962 -1.12414253906772 0.260952561430388 1 FALSE ActinomycesActinomyces israelii (SP293) 0.630779344369797 0.384998036476184 1.63839626337631 0.101339058133021 1 FALSE FretibacteriumFretibacterium sp._HMT_360 (SP294) 0.0097280353079016 0.309446141387431 0.0314369255479646 0.974921093365704 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP296) 0.137736125644477 0.26902246682599 0.511987445768119 0.608659795901591 1 FALSE StreptococcusStreptococcus sp._HMT_064 (SP303) -0.326467745882064 0.333154074153369 -0.979930222110306 0.32712056352387 1 FALSE ParvimonasParvimonas micra (SP31) 0.486574549275504 0.395712041913592 1.22961774658794 0.218840281258915 1 FALSE ActinomycesActinomyces massiliensis (SP310) 0.333043135225727 0.305359175058958 1.0906603188243 0.275422377282479 1 FALSE TreponemaTreponema denticola (SP311) 0.205145220794394 0.243694980124902 0.841811434479488 0.399893510502 1 FALSE RothiaRothia mucilaginosa (SP318) 0.250379999499333 0.368151296190175 0.680100822923613 0.496440623450508 1 FALSE AggregatibacterAggregatibacter sp._HMT_458 (SP32) 0.322382993059291 0.270370656102379 1.1923741936596 0.233114554453282 1 FALSE CapnocytophagaCapnocytophaga granulosa (SP320) -0.190583471763131 0.218015821275756 -0.874172666221652 0.382024229211879 1 FALSE MogibacteriumMogibacterium timidum (SP324) 0.285937924307814 0.300253830238014 0.952320655097551 0.34093438563882 1 FALSE CapnocytophagaCapnocytophaga sputigena (SP33) 0.337476147242147 0.250452242916075 1.34746705923984 0.177829855653172 1 FALSE GemellaGemella morbillorum (SP332) -0.366944670838156 0.285870552637096 -1.28360430080387 0.199280444155613 1 FALSE CapnocytophagaCapnocytophaga leadbetteri (SP34) -0.185577070247958 0.320307176261014 -0.579372190202613 0.56233806460384 1 FALSE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP35) -0.183166697841086 0.317986905504721 -0.576019624299802 0.564601917195414 1 FALSE ActinomycesActinomyces sp._HMT_448 (SP361) -0.625643394490626 0.560584097934975 -1.11605626487678 0.26439805128026 1 FALSE StreptococcusStreptococcus salivarius (SP374) 0.38309965663046 0.317856403487636 1.20526015026581 0.228102888180493 1 FALSE TreponemaTreponema sp._HMT_231 (SP40) -0.401725867122562 0.244829586736415 -1.64083872573401 0.100830897159085 1 FALSE PrevotellaPrevotella intermedia (SP41) 0.431128150531421 0.31384762023328 1.37368621820668 0.169539117278843 1 FALSE OlsenellaOlsenella uli (SP417) 0.343438453004855 0.288208266717366 1.19163290115356 0.233405218383518 1 FALSE AlloprevotellaAlloprevotella rava (SP42) -0.225761637681189 0.289362767185204 -0.780202787930529 0.435271521596014 1 FALSE PeptidiphagaPeptidiphaga sp._HMT_183 (SP422) -0.47295560436847 0.415840800759741 -1.13734776266393 0.25539293536471 1 FALSE NeisseriaNeisseria mucosa (SP44) 0.0802589013229113 0.308839596320594 0.259872446017569 0.794962166127146 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_B66 (SP442) 0.251697837329498 0.266899170184964 0.943044660480094 0.345658059754927 1 FALSE GemellaGemella moribillum (SP45) -0.0433625409644259 0.279100135680411 -0.155365531653052 0.876533155924471 1 FALSE RothiaRothia aeria (SP465) 0.600710618992152 0.309433140176534 1.94132606045184 0.0522187404678619 1 FALSE LeptotrichiaLeptotrichia wadei (SP49) -0.337641773869335 0.401906607348063 -0.840100082198767 0.400852274029689 1 FALSE StreptococcusStreptococcus parasanguinis_II (SP5) 0.208905779520101 0.485634506859665 0.430170790109174 0.667071408382357 1 FALSE FusobacteriumFusobacterium nucleatum (SP51) -0.0355881132168213 0.408239871403473 -0.0871745160375302 0.930532795482083 1 FALSE StreptococcusStreptococcus mitis (SP52) -0.162004291071795 0.457529333820462 -0.354085036950586 0.723275155398743 1 FALSE StreptococcusStreptococcus constellatus (SP53) 0.0747725109098299 0.254513959130349 0.29378550066692 0.768921815224467 1 FALSE PrevotellaPrevotella maculosa (SP55) -0.410456629975754 0.261532100821033 -1.56943116614442 0.116547506764395 1 FALSE StreptococcusStreptococcus sp._str._C300 (SP56) -0.122268032387344 0.489183548164206 -0.24994305889106 0.802631383570278 1 FALSE StreptococcusStreptococcus oralis (SP58) 0.081630289797464 0.449724045314154 0.181511953047655 0.855965751810282 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_150 (SP6) 0.349260969190368 0.233238833698808 1.49743918562629 0.134279018504666 1 FALSE PrevotellaPrevotella denticola (SP60) -0.309651487183384 0.407281799284453 -0.760288055413734 0.447082420094607 1 FALSE ActinomycesActinomyces sp._HMT_175 (SP62) 0.683507903565677 0.416353533531432 1.64165270261619 0.100661998833131 1 FALSE TreponemaTreponema socranskii (SP63) 0.25765896648817 0.374242762305312 0.688480826993172 0.491150040041658 1 FALSE StreptococcusStreptococcus gordonii (SP64) -0.166604029221424 0.428444033401099 -0.388858325085959 0.69738095236174 1 FALSE PrevotellaPrevotella sp._HMT_314 (SP65) -0.0957026146782213 0.268699387446058 -0.356169828252526 0.721713385860723 1 FALSE CampylobacterCampylobacter concisus (SP67) 0.39588104057719 0.31824132470544 1.24396490915695 0.213512478100249 1 FALSE CorynebacteriumCorynebacterium durum (SP68) -0.177590053338605 0.31739538359247 -0.559523113816386 0.575804761172781 1 FALSE ActinomycesActinomyces sp._HMT_170 (SP69) 0.105335308685795 0.318837780937058 0.330372731789239 0.741118342801089 1 FALSE TreponemaTreponema sp._HMT_237 (SP70) -0.586590142342309 0.271593027589616 -2.1598129655547 0.0307871515236217 1 FALSE ParvimonasParvimonas sp._Oral_Taxon_110 (SP72) -0.11127594868726 0.24072032433528 -0.46226237437381 0.643893178180951 1 FALSE ActinomycesActinomyces sp._HMT_525 (SP73) 0.0815036485817076 0.412649129802513 0.197513196309692 0.843425955682202 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_848 (SP76) 0.449880060680021 0.310574894363175 1.44853968831733 0.147466174687806 1 FALSE PrevotellaPrevotella melaninogenica (SP79) 0.107596338373815 0.304518694224674 0.353332456806184 0.723839215711357 1 FALSE SelenomonasSelenomonas noxia (SP8) -0.391203475421577 0.296082120560738 -1.32126679814604 0.186412420456729 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP82) -0.0886899179351686 0.370994043294443 -0.239060220880094 0.811058886667078 1 FALSE FusobacteriumFusobacterium nucleatum_ss_animalis (SP84) -0.635071471966115 0.431738625367005 -1.4709628341135 0.141301168220749 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP86) 0.290916878925585 0.343611667767154 0.846644355286337 0.397193382971724 1 FALSE VeillonellaVeillonella parvula (SP88) -0.0749157853387356 0.36554910329654 -0.204940416111383 0.837618677839728 1 FALSE PrevotellaPrevotella oulorum (SP9) -0.517678954764482 0.305324669056954 -1.69550320438705 0.0899800028914582 1 FALSE MegasphaeraMegasphaera micronuciformis (SP92) 0.111530131821921 0.244855202410698 0.455494229748283 0.64875371789319 1 FALSE StreptococcusStreptococcus intermedius (SP94) -0.302346798954776 0.40061928047047 -0.754698572169849 0.450429863434214 1 FALSE ActinomycesActinomyces sp._HMT_897 (SP95) -0.195609595086389 0.357832418908835 -0.546651406496024 0.584618244708779 1 FALSE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP97) -0.242370524935281 0.233755447964892 -1.03685508528419 0.299803398824135 1 FALSE CapnocytophagaCapnocytophaga ochracea (SP98) -0.0771939644239989 0.252031848960676 -0.306286545697815 0.75938648226914 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP99) -0.539355037190812 0.376895887718942 -1.43104516330785 0.152417271801067 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_171_nov_97.974% (SPN109) -0.041382196838126 0.339715370580182 -0.121814319933336 0.903046072744907 1 FALSE ActinomycesActinomyces viscosus_nov_95.849% (SPN129) -0.173513452295945 0.318900446227718 -0.544099120425951 0.586373265709885 1 FALSE ActinomycesActinomyces sp._HMT_175_nov_97.633% (SPN13) -0.0291147254390424 0.325613871975847 -0.0894148804606272 0.928752197942263 1 FALSE FusobacteriumFusobacterium nucleatum_ss_vincentii_nucleatum_subsp._vincentii (SPP1) 0.171883691322454 0.338977802840608 0.507064739584958 0.612109394571593 1 FALSE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP26) -0.55848304103179 0.371793181582321 -1.5021336288496 0.133062601474432 1 FALSE GranulicatellaGranulicatella adiacens_paradiacens (SPP3) -0.122988262718031 0.305660279083571 -0.402369137026158 0.687412380111559 1 FALSE Eubacterium_[XIVa][G-1]_LachnoanaerobaculumEubacterium_[XIVa][G-1]_Lachnoanaerobaculum saburreum (SPP6) -0.268952861957358 0.326593027522184 -0.823510728314888 0.410217618852348 1 FALSE FusobacteriumFusobacterium nucleatum_nucleatum_ss_animalis (SPP60) -0.518297893950639 0.420704466010382 -1.23197621091536 0.217957970663754 1 FALSE