Group24 Weeks.B.Plaque 1...1 Group24 Weeks.B.Plaque 1...2 Group24 Weeks.B.Plaque 1...3 Group24 Weeks.B.Plaque 1...4 Group24 Weeks.B.Plaque 1...5 Group24 Weeks.B.Plaque 1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance PorphyromonasPorphyromonas catoniae (SP10) -0.264316943867249 0.353098448910759 -0.748564443380069 0.454119769735264 1 FALSE StreptococcusStreptococcus mutans (SP100) -1.21892995420496 0.735746149947986 -1.65672624218438 0.0975748349533997 1 FALSE TannerellaTannerella forsythia (SP101) 0.568168900989992 0.416054969645617 1.36561017760211 0.172061350386672 1 FALSE PrevotellaPrevotella oralis (SP104) -0.313870039952206 0.384345821723022 -0.816634453173256 0.414137359838389 1 FALSE StomatobaculumStomatobaculum longum (SP105) 0.468008578093207 0.34801772237612 1.34478375094762 0.17869507913795 1 FALSE GranulicatellaGranulicatella adiacens (SP107) 0.697857052885466 0.47310666867155 1.47505224317594 0.14019849841633 1 FALSE GranulicatellaGranulicatella paradiacens (SP108) 0.182858275836112 0.462776437500179 0.395133072945273 0.692744681973772 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_171 (SP109) 0.355065078000208 0.495745705167045 0.716224213945668 0.47385291388913 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP110) -0.0213736475603375 0.518952481041164 -0.0411861361900726 0.967147506012909 1 FALSE PrevotellaPrevotella salivae (SP111) -0.232098405894557 0.377617018422614 -0.614639686696541 0.538792699052075 1 FALSE VeillonellaVeillonella atypica (SP116) 0.541753926501223 0.395524115196909 1.36971149339785 0.170776979488588 1 FALSE CatonellaCatonella morbi (SP118) -0.531297740481682 0.43254047420663 -1.22831913350119 0.219327191154928 1 FALSE PrevotellaPrevotella oris (SP12) 0.299953681864544 0.508427865190528 0.58996310470147 0.555215385358283 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP120) -0.259971391619246 0.470600066251005 -0.55242531878562 0.580656987854704 1 FALSE BifidobacteriumBifidobacterium dentium (SP121) 0.112300189236034 0.369710561447565 0.303751639651121 0.761317112810612 1 FALSE CampylobacterCampylobacter showae (SP122) 0.0206174198954007 0.419787412611636 0.0491139545303012 0.96082848272157 1 FALSE FretibacteriumFretibacterium fastidiosum (SP124) 0.362226065662204 0.413256972979565 0.876515314552517 0.380749954583395 1 FALSE PrevotellaPrevotella sp._HMT_300 (SP126) 0.21633498566827 0.438456422407841 0.493401338450555 0.621729036828946 1 FALSE StreptococcusStreptococcus sp._str._2136FAA (SP128) -0.872971096064263 0.517895869284876 -1.68561123545875 0.0918707037296151 1 FALSE PrevotellaPrevotella veroralis (SP129) -0.0837066812496153 0.368035532984134 -0.227441846636107 0.820080183872048 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP130) -0.38791796361125 0.483349483551847 -0.802562073224269 0.422227897087304 1 FALSE LachnoanaerobaculumLachnoanaerobaculum orale (SP139) -0.685315232022703 0.34494427733659 -1.98674185092796 0.0469510114675457 1 FALSE HaemophilusHaemophilus parainfluenzae (SP140) 0.497831169316805 0.666816868448818 0.746578547832608 0.455318001540091 1 FALSE OribacteriumOribacterium sp._Oral_Taxon_78 (SP142) 0.0965301070300865 0.475051608573791 0.203199200440329 0.838979337754847 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP144) -0.0637970716105853 0.404331803210167 -0.157783956404301 0.874627041221464 1 FALSE LeptotrichiaLeptotrichia buccalis (SP146) -0.477751266314022 0.417603947941983 -1.14402957316006 0.252611372719876 1 FALSE ActinomycesActinomyces viscosus (SP147) 0.480148083631837 0.58033315979436 0.827366273197238 0.408029490746649 1 FALSE StreptococcusStreptococcus cristatus (SP15) -0.492668864416707 0.546683570692187 -0.9011956656991 0.367484295069424 1 FALSE Peptostreptococcaceae_[XI][G-5]Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP153) 0.42592252455441 0.335175027900136 1.27074659237833 0.203818814276273 1 FALSE PorphyromonasPorphyromonas endodontalis (SP155) 0.277795934705666 0.492001516758547 0.564624142900754 0.572329440257523 1 FALSE BergeyellaBergeyella sp._HMT_322 (SP158) -0.0392513636017527 0.458067775726372 -0.0856889868306292 0.931713657162138 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_155 (SP165) -0.0547510247732756 0.353983880727773 -0.154670954679377 0.877080729199912 1 FALSE ScardoviaScardovia wiggsiae (SP166) 0.0459206279394553 0.540812284627278 0.0849104749369799 0.932332564069287 1 FALSE StreptococcusStreptococcus sanguinis (SP17) -0.149238218059041 0.662378579108928 -0.225306528269385 0.821740821404284 1 FALSE ActinomycesActinomyces odontolyticus (SP170) 0.08794317397818 0.432168194385914 0.203492934280233 0.838749767780256 1 FALSE ActinomycesActinomyces sp._HMT_171 (SP171) 0.0773507602851904 0.595574109620373 0.129875961758134 0.896664562922063 1 FALSE ActinomycesActinomyces naeslundii (SP172) -0.599517405181641 0.501071684352924 -1.19647033329343 0.231513068928765 1 FALSE StreptococcusStreptococcus anginosus (SP175) -0.156208158423081 0.51062635653183 -0.305914797434361 0.759669519018505 1 FALSE KingellaKingella oralis (SP176) -0.0722736678778078 0.545474363649812 -0.13249691038497 0.894591266636746 1 FALSE LeptotrichiaLeptotrichia sp._AF189244.1 (SP18) -0.219292177161269 0.534005858076902 -0.410655002832738 0.681325526034979 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_178 (SP181) -0.383913292595204 0.373942301632733 -1.02666451727696 0.30457846279126 1 FALSE GemellaGemella haemolysans (SP183) -0.436358980155599 0.38103637919016 -1.14518981385195 0.252130536965355 1 FALSE PorphyromonasPorphyromonas pasteri (SP184) -0.00627847083074723 0.381011053670446 -0.0164784479879625 0.986852695768622 1 FALSE OlsenellaOlsenella sp._Oral_Taxon_807 (SP189) 0.0427003592407794 0.560883733576251 0.0761305002883889 0.939315274826139 1 FALSE RothiaRothia dentocariosa (SP193) -0.136422030971584 0.603384408080104 -0.226094723603585 0.821127748302276 1 FALSE StreptococcusStreptococcus vestibularis (SP198) -0.474034167379865 0.476917017959586 -0.993955236506229 0.320244660821672 1 FALSE EikenellaEikenella corrodens (SP200) 0.714750800140836 0.384660365111622 1.85813477282336 0.0631498779130228 1 FALSE ActinomycesActinomyces sp._str._ChDCB197 (SP201) 0.367986945251108 0.644148039704944 0.571276977602333 0.567811905156967 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP202) 0.375605364449707 0.44895339755176 0.836624394643108 0.402803728923104 1 FALSE CampylobacterCampylobacter gracilis (SP205) -0.244939116102342 0.415052021782728 -0.590140761272001 0.555096283353108 1 FALSE SelenomonasSelenomonas sputigena (SP21) -0.492499605034609 0.472597747597594 -1.0421116214332 0.297359931165102 1 FALSE StreptococcusStreptococcus oralis_subsp._tigurinus_clade_070 (SP212) -0.280897403323624 0.504095748255139 -0.557230256942086 0.577370119590391 1 FALSE LancefieldellaLancefieldella rimae (SP217) 0.498989468489502 0.50546687779438 0.987185294250845 0.323551809671717 1 FALSE TannerellaTannerella sp._HMT_286 (SP218) -0.163240252857368 0.359146579486329 -0.454522643904456 0.64945269773586 1 FALSE LeptotrichiaLeptotrichia sp._HMT_417 (SP220) 0.0490933571259177 0.350256101429812 0.140164173944463 0.88853027747434 1 FALSE PrevotellaPrevotella pleuritidis (SP233) 0.672403925414495 0.445330785744142 1.50989769164716 0.131069531797409 1 FALSE FilifactorFilifactor alocis (SP234) 0.0321666085879195 0.368194698107558 0.0873630412204439 0.930382945852724 1 FALSE CorynebacteriumCorynebacterium matruchotii (SP24) -0.657041921927264 0.576019825773107 -1.14065851994836 0.254012054428256 1 FALSE CardiobacteriumCardiobacterium hominis (SP242) 0.0028008105952645 0.393045962922947 0.00712591111338694 0.994314393658879 1 FALSE LautropiaLautropia mirabilis (SP245) 0.359176929023977 0.550218432316462 0.652789706647621 0.513891860469601 1 FALSE ActinomycesActinomyces oris (SP249) -0.0313077884150962 0.536908896755928 -0.0583111745852264 0.953500766630083 1 FALSE LeptotrichiaLeptotrichia sp._HMT_215 (SP259) -0.0554925316308153 0.365655449087381 -0.151761806830217 0.879374806870534 1 FALSE ActinomycesActinomyces johnsonii (SP26) -0.0570495224200062 0.414436027325768 -0.137655798865098 0.890512454131817 1 FALSE ArachniaArachnia propionica (SP260) -0.450821811827254 0.465861459292827 -0.967716480585445 0.333185985033864 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_180 (SP262) -0.00985715921554063 0.496965429602735 -0.019834698005896 0.984175238316793 1 FALSE CapnocytophagaCapnocytophaga endodontalis (SP268) -0.542771698243219 0.459607755643393 -1.1809454726964 0.237624385354574 1 FALSE AlloprevotellaAlloprevotella tannerae (SP27) -0.221527295569502 0.477321409797076 -0.464105089406485 0.642572455599825 1 FALSE LeptotrichiaLeptotrichia sp._HMT_498 (SP271) -0.285252638219608 0.318952911996072 -0.894340912062659 0.37113951655879 1 FALSE ShuttleworthiaShuttleworthia satelles (SP278) 0.167383041338422 0.366203368882377 0.457076738123031 0.647615889519409 1 FALSE SolobacteriumSolobacterium moorei (SP279) -0.0808182171700042 0.381864872676373 -0.211640878626972 0.832387215122911 1 FALSE DialisterDialister invisus (SP28) -0.107255814580708 0.536321246414199 -0.199984273041226 0.841492880965791 1 FALSE ActinomycesActinomyces dentalis (SP286) -0.942010636040367 0.57595461665864 -1.63556399895772 0.101930870154077 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP287) 0.152060397088843 0.41509577713639 0.36632605163526 0.714121792243924 1 FALSE PrevotellaPrevotella sp._HMT_317 (SP29) -0.0180310413991168 0.462648946405629 -0.038973484191852 0.968911529096436 1 FALSE ActinomycesActinomyces israelii (SP293) 0.522710614550377 0.513734595151902 1.01747209450791 0.308928900775856 1 FALSE FretibacteriumFretibacterium sp._HMT_360 (SP294) -0.0465654918838443 0.369740592130884 -0.125940978282851 0.899778644925405 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP296) -0.674626679256415 0.417344061172481 -1.6164760494282 0.105991427597098 1 FALSE StreptococcusStreptococcus sp._HMT_064 (SP303) 0.136233477527496 0.46870800505713 0.290657458497836 0.771313310674715 1 FALSE ParvimonasParvimonas micra (SP31) 0.279100117199732 0.50547047256419 0.55215909207098 0.580839358943681 1 FALSE ActinomycesActinomyces massiliensis (SP310) 0.601229153126583 0.464254263562393 1.29504282526806 0.195305456548569 1 FALSE TreponemaTreponema denticola (SP311) -0.184200789374083 0.380798028235207 -0.483723065026766 0.62858242177999 1 FALSE RothiaRothia mucilaginosa (SP318) 0.233721498897305 0.473256139614061 0.49385835562092 0.621406216991134 1 FALSE AggregatibacterAggregatibacter sp._HMT_458 (SP32) -0.0772936014499744 0.38184248314964 -0.202422739377808 0.839586252892424 1 FALSE CapnocytophagaCapnocytophaga granulosa (SP320) 0.381515841879382 0.405391787620671 0.941104022157374 0.346651554554657 1 FALSE MogibacteriumMogibacterium timidum (SP324) 0.687365159956313 0.365125523844927 1.88254481011918 0.059762081748003 1 FALSE CapnocytophagaCapnocytophaga sputigena (SP33) -0.00336805845321948 0.41329440565058 -0.00814929601555509 0.99349787449666 1 FALSE GemellaGemella morbillorum (SP332) -0.613905513158209 0.392788258187699 -1.5629426296772 0.118066089510446 1 FALSE CapnocytophagaCapnocytophaga leadbetteri (SP34) 0.362750113404725 0.473975610737976 0.765334977552803 0.444072101017487 1 FALSE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP35) -0.00294663399742993 0.495832726448286 -0.00594279852912706 0.995258360715628 1 FALSE PrevotellaPrevotella loescheii (SP36) 0.213734135460002 0.383177212321364 0.557794484085203 0.576984729700441 1 FALSE ActinomycesActinomyces sp._HMT_448 (SP361) 0.0473004795429411 0.728285911646139 0.0649476789081753 0.948215658422696 1 FALSE NeisseriaNeisseria elongata (SP369) 0.53300949084906 0.383938602683674 1.38826751757547 0.165055599437 1 FALSE StreptococcusStreptococcus salivarius (SP374) 0.438986807338284 0.378773124039539 1.15897031620559 0.246468284817422 1 FALSE TreponemaTreponema sp._HMT_231 (SP40) 0.14603459400559 0.399938747077305 0.36514240011199 0.715005112022653 1 FALSE PrevotellaPrevotella intermedia (SP41) 0.621355617201666 0.414614673138381 1.49863393038742 0.133968625326867 1 FALSE OlsenellaOlsenella uli (SP417) 0.290271923371723 0.325586907942049 0.891534383880659 0.372642553902083 1 FALSE AlloprevotellaAlloprevotella rava (SP42) 0.0150567842434476 0.394139553660669 0.0382016575185211 0.969526899353505 1 FALSE PeptidiphagaPeptidiphaga sp._HMT_183 (SP422) -0.000568224746628668 0.523686680330371 -0.00108504716268552 0.999134257791027 1 FALSE NeisseriaNeisseria mucosa (SP44) 0.40585482236435 0.440729088298875 0.92087142224006 0.357117560391263 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_B66 (SP442) -0.270593236657502 0.49736365423029 -0.544055108080357 0.586403551204443 1 FALSE GemellaGemella moribillum (SP45) 0.238244540951437 0.387616635530236 0.614639618409393 0.538792744159158 1 FALSE RothiaRothia aeria (SP465) 0.243293929162542 0.519925454942687 0.467940022650673 0.639827481377975 1 FALSE LeptotrichiaLeptotrichia wadei (SP49) -0.567652981640258 0.581346707207763 -0.97644482131278 0.328844079291876 1 FALSE StreptococcusStreptococcus parasanguinis_II (SP5) 0.0976851686522613 0.616528900513934 0.15844377866282 0.87410711905235 1 FALSE FusobacteriumFusobacterium nucleatum (SP51) 0.198578948726233 0.545370409242806 0.364117571032027 0.715770216367208 1 FALSE StreptococcusStreptococcus mitis (SP52) 0.0935863426906851 0.60794015603003 0.153940057688938 0.877656999063917 1 FALSE StreptococcusStreptococcus constellatus (SP53) 0.0366732944309445 0.412928729925853 0.0888126491889526 0.929230804819363 1 FALSE PrevotellaPrevotella maculosa (SP55) -0.310321094869012 0.363906199592079 -0.852750228539297 0.393797830061667 1 FALSE StreptococcusStreptococcus sp._str._C300 (SP56) -0.0724685170719727 0.575000192243169 -0.126032161466349 0.899706466381368 1 FALSE StreptococcusStreptococcus oralis (SP58) -0.272477673714106 0.539207657672161 -0.505329755312513 0.613327247088767 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_150 (SP6) 0.369517339592144 0.3925721939414 0.941272319575703 0.346565324065115 1 FALSE PrevotellaPrevotella denticola (SP60) 0.458237624907889 0.547574595661708 0.836849679547568 0.40267706845139 1 FALSE ActinomycesActinomyces sp._HMT_175 (SP62) 0.912355964167128 0.527200830364376 1.73056625031594 0.0835291555172278 1 FALSE TreponemaTreponema socranskii (SP63) 0.745837607552792 0.473740337570107 1.5743595138601 0.115404358102947 1 FALSE StreptococcusStreptococcus gordonii (SP64) 0.0654083728300417 0.586552397954531 0.111513264728162 0.911209347472188 1 FALSE PrevotellaPrevotella sp._HMT_314 (SP65) -0.0960876944913015 0.309107151185397 -0.31085561793965 0.755910385737836 1 FALSE CampylobacterCampylobacter concisus (SP67) 0.0342656378919816 0.412477459513241 0.0830727524660815 0.933793691323033 1 FALSE CorynebacteriumCorynebacterium durum (SP68) 0.204003957981432 0.479645398560424 0.425322454033159 0.670601627103733 1 FALSE ActinomycesActinomyces sp._HMT_170 (SP69) 0.23156534440224 0.550523007513864 0.420627914259167 0.674026806926414 1 FALSE TreponemaTreponema sp._HMT_237 (SP70) -0.431398071890378 0.385267476130148 -1.11973654309882 0.2628260477238 1 FALSE ParvimonasParvimonas sp._Oral_Taxon_110 (SP72) 0.152403253634089 0.404431627629878 0.376833173328283 0.706297586240806 1 FALSE ActinomycesActinomyces sp._HMT_525 (SP73) 0.63741199943031 0.473923190595955 1.34496899936205 0.178635245972027 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_848 (SP76) 0.48097617114849 0.393868463524777 1.22115938616709 0.222025678247303 1 FALSE PrevotellaPrevotella melaninogenica (SP79) -0.0543999779249016 0.430500390237431 -0.12636452639427 0.899443380854227 1 FALSE SelenomonasSelenomonas noxia (SP8) 0.00414544484545904 0.480663559007224 0.0086244209026812 0.993118793020749 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP82) -0.32878847679792 0.520019674429516 -0.632261610406596 0.527215944445886 1 FALSE FusobacteriumFusobacterium nucleatum_ss_animalis (SP84) 0.365251255441988 0.595239859978541 0.613620289903226 0.539466272572326 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP86) 0.40043389521016 0.475808930157913 0.841585497517381 0.400020009770373 1 FALSE VeillonellaVeillonella parvula (SP88) -0.36185427191963 0.363377617038111 -0.995807817963865 0.319343530987583 1 FALSE PrevotellaPrevotella oulorum (SP9) -0.69281232643554 0.410696667064355 -1.68691976827506 0.0916187803710757 1 FALSE MegasphaeraMegasphaera micronuciformis (SP92) -0.0870766630497367 0.305973365122493 -0.284589029554505 0.775959017004203 1 FALSE StreptococcusStreptococcus intermedius (SP94) -0.399493111749441 0.575362063753708 -0.694333423971535 0.487473134597525 1 FALSE ActinomycesActinomyces sp._HMT_897 (SP95) 0.192294497626468 0.443218042421664 0.433859814406033 0.664390242902996 1 FALSE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP97) -0.350379372601411 0.340653895303085 -1.02854943810249 0.303691447960795 1 FALSE CapnocytophagaCapnocytophaga ochracea (SP98) -0.448800854516076 0.340693479147166 -1.31731565758032 0.187732838974343 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP99) -0.158966855833826 0.49229833813436 -0.322907561370723 0.746765249679644 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_171_nov_97.974% (SPN109) 0.281924555732385 0.491329263851524 0.573799642061582 0.566103390999463 1 FALSE ActinomycesActinomyces viscosus_nov_95.849% (SPN129) 0.249244511248347 0.388879641695391 0.640929697841011 0.521568359883633 1 FALSE ActinomycesActinomyces sp._HMT_175_nov_97.633% (SPN13) -1.22413572152131 0.449115275283785 -2.7256604014366 0.00641729870050727 0.924091012873047 FALSE FusobacteriumFusobacterium nucleatum_ss_vincentii_nucleatum_subsp._vincentii (SPP1) 0.221722095752729 0.446340601503991 0.49675538144102 0.619361563020034 1 FALSE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP26) 0.394112042531019 0.510977537121721 0.771290348203969 0.440534852001776 1 FALSE GranulicatellaGranulicatella adiacens_paradiacens (SPP3) -0.673043228583071 0.511660634576229 -1.31540943958001 0.188372334760771 1 FALSE Eubacterium_[XIVa][G-1]_LachnoanaerobaculumEubacterium_[XIVa][G-1]_Lachnoanaerobaculum saburreum (SPP6) -0.588712233564049 0.503734492795771 -1.16869549729788 0.24252633673765 1 FALSE FusobacteriumFusobacterium nucleatum_nucleatum_ss_animalis (SPP60) -0.630036468289542 0.530288982127991 -1.18810024255317 0.234793918811912 1 FALSE