GroupBaseline.B.Plaque 2...1 GroupBaseline.B.Plaque 2...2 GroupBaseline.B.Plaque 2...3 GroupBaseline.B.Plaque 2...4 GroupBaseline.B.Plaque 2...5 GroupBaseline.B.Plaque 2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance PorphyromonasPorphyromonas catoniae (SP10) -0.376485566917107 0.289827362875122 -1.29899938771248 0.193944139300542 1 FALSE StreptococcusStreptococcus mutans (SP100) -0.757375721393984 0.522128617314841 -1.45055393686129 0.146904109786288 1 FALSE TannerellaTannerella forsythia (SP101) 0.151012423621047 0.355889060556233 0.424324432408864 0.671329223197588 1 FALSE PrevotellaPrevotella oralis (SP104) 0.279379366102699 0.325452835956767 0.858432728912558 0.390653561661227 1 FALSE StomatobaculumStomatobaculum longum (SP105) -0.506084353501521 0.386718442269542 -1.30866361203633 0.19064832280851 1 FALSE GranulicatellaGranulicatella adiacens (SP107) -0.1175557687422 0.431116791623804 -0.27267731395807 0.785101274921205 1 FALSE GranulicatellaGranulicatella paradiacens (SP108) 0.558124288725118 0.417691132577907 1.33621292192747 0.181479688656232 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP110) -0.0112230182199197 0.442715962661398 -0.0253503807553091 0.979775488794125 1 FALSE PrevotellaPrevotella salivae (SP111) 0.100759560674657 0.351897687236041 0.286331977530364 0.774623868399326 1 FALSE VeillonellaVeillonella atypica (SP116) 0.115433781640848 0.329270290024713 0.350574543582976 0.725907557156222 1 FALSE CatonellaCatonella morbi (SP118) -0.00616203912338223 0.35878739211281 -0.0171746255828431 0.986297305055406 1 FALSE PrevotellaPrevotella oris (SP12) 0.299955759200814 0.460797552956274 0.650949114804169 0.515079335079799 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP120) -0.141014885100834 0.401225762405099 -0.351460196014179 0.725243129099472 1 FALSE CampylobacterCampylobacter showae (SP122) -0.821828828323307 0.286841941403137 -2.86509296479863 0.00416886834901014 0.529446280324288 FALSE FretibacteriumFretibacterium fastidiosum (SP124) -0.492401368124919 0.354228749524068 -1.39006607675548 0.164508813303427 1 FALSE PrevotellaPrevotella sp._HMT_300 (SP126) 0.0314923611778629 0.390934846891003 0.0805565465148807 0.935794624697579 1 FALSE StreptococcusStreptococcus sp._str._2136FAA (SP128) -0.686625842355931 0.42768746045194 -1.60543833020115 0.108397374717172 1 FALSE PrevotellaPrevotella veroralis (SP129) -0.211704255710556 0.354994240390495 -0.596359691576066 0.550934962225583 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP130) -0.0346012157922657 0.424145794749402 -0.0815785897693719 0.934981827424326 1 FALSE LachnoanaerobaculumLachnoanaerobaculum orale (SP139) 0.173624936303624 0.318244030653599 0.545571698382021 0.585360383086149 1 FALSE HaemophilusHaemophilus parainfluenzae (SP140) -0.547184031049988 0.452509573367281 -1.20922089444031 0.226577992445218 1 FALSE OribacteriumOribacterium sp._Oral_Taxon_78 (SP142) -0.557663268096419 0.409844007228552 -1.36067200754612 0.173617364550953 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP144) 0.328069136030993 0.350897720834856 0.934942339467041 0.349818015736004 1 FALSE LeptotrichiaLeptotrichia buccalis (SP146) -0.257969684673522 0.321484234546098 -0.802433391602383 0.422302303984974 1 FALSE ActinomycesActinomyces viscosus (SP147) 0.256149359976119 0.492481846024363 0.520119395352184 0.602980360904769 1 FALSE StreptococcusStreptococcus cristatus (SP15) -0.776907387772987 0.437965044372677 -1.77390272980757 0.0760792411403745 1 FALSE PorphyromonasPorphyromonas gingivalis (SP152) 0.709958413120088 0.359480377995763 1.97495734559524 0.0482729887553183 1 FALSE Peptostreptococcaceae_[XI][G-5]Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP153) 0.547244031423498 0.340135468561199 1.60890022360322 0.107638160601503 1 FALSE PorphyromonasPorphyromonas endodontalis (SP155) 0.451257775986058 0.434933359433088 1.0375331443287 0.299487457281956 1 FALSE BergeyellaBergeyella sp._HMT_322 (SP158) -0.398166309565232 0.352656218347789 -1.12904945056877 0.258876973670446 1 FALSE ScardoviaScardovia wiggsiae (SP166) 0.253725864013755 0.449676791551605 0.564240514032927 0.572590459025232 1 FALSE StreptococcusStreptococcus sanguinis (SP17) 0.388275351561629 0.554955752288063 0.699651008140349 0.484145279227414 1 FALSE ActinomycesActinomyces odontolyticus (SP170) -0.0889632563787395 0.319927140231469 -0.278073489840137 0.780955945528925 1 FALSE ActinomycesActinomyces sp._HMT_171 (SP171) -0.393654678560139 0.351493491779499 -1.11994869824528 0.262735624355737 1 FALSE ActinomycesActinomyces naeslundii (SP172) -0.361282020262895 0.310524376891681 -1.16345783825184 0.244643794737477 1 FALSE StreptococcusStreptococcus anginosus (SP175) 0.300278095712104 0.507427728661868 0.591765248036335 0.554007797312146 1 FALSE KingellaKingella oralis (SP176) 0.101090093899647 0.391143649338576 0.258447488718249 0.796061570409897 1 FALSE LeptotrichiaLeptotrichia sp._AF189244.1 (SP18) -0.31550692644396 0.391514898388817 -0.805861865646369 0.420322501574497 1 FALSE GemellaGemella haemolysans (SP183) -0.263771494059366 0.364785656891031 -0.723086253739852 0.469626894034795 1 FALSE PorphyromonasPorphyromonas pasteri (SP184) -0.176194635935246 0.355341763479531 -0.495845560651063 0.620003377434965 1 FALSE OlsenellaOlsenella sp._Oral_Taxon_807 (SP189) -0.107266309323211 0.46987274053378 -0.228288002409664 0.819422351017038 1 FALSE RothiaRothia dentocariosa (SP193) 0.372543174314659 0.522141352608163 0.713491035432757 0.475541958425137 1 FALSE StreptococcusStreptococcus vestibularis (SP198) 0.238209089389829 0.330959649105291 0.719752664815177 0.471677294014116 1 FALSE EikenellaEikenella corrodens (SP200) -0.495916665650199 0.28285685434606 -1.75324252543469 0.0795603863592602 1 FALSE ActinomycesActinomyces sp._str._ChDCB197 (SP201) 0.479232642916396 0.482084135864773 0.994085072010797 0.320181452313595 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP202) 0.0191046102515456 0.361882112210361 0.0527923586354004 0.957897349937645 1 FALSE PrevotellaPrevotella multiformis (SP204) -0.105087044600249 0.303957564439712 -0.345729328348703 0.729546141068419 1 FALSE CampylobacterCampylobacter gracilis (SP205) 0.153462546400835 0.423676588912393 0.362216252719519 0.717190435115603 1 FALSE SelenomonasSelenomonas sputigena (SP21) 0.619485135972537 0.434546905264493 1.42558864985008 0.153987114417121 1 FALSE StreptococcusStreptococcus oralis_subsp._tigurinus_clade_070 (SP212) 0.46350281273915 0.477304296078293 0.971084518927358 0.331506192263385 1 FALSE LancefieldellaLancefieldella rimae (SP217) 0.149775577421507 0.422775203063306 0.354267649418123 0.723138309639206 1 FALSE TannerellaTannerella sp._HMT_286 (SP218) -0.292230618044177 0.347632553861873 -0.840630760260419 0.400554820748755 1 FALSE PrevotellaPrevotella pleuritidis (SP233) -0.275597175623212 0.425584586145931 -0.647573207758776 0.517261030711782 1 FALSE FilifactorFilifactor alocis (SP234) 0.349024556487148 0.367137497399089 0.950664421258362 0.341774754691388 1 FALSE CorynebacteriumCorynebacterium matruchotii (SP24) -0.577793019400374 0.479645858189571 -1.20462422334107 0.228348401076824 1 FALSE CardiobacteriumCardiobacterium hominis (SP242) 0.0344448293865093 0.297839827909123 0.115648835913977 0.907930857081256 1 FALSE LautropiaLautropia mirabilis (SP245) -0.143633127778617 0.348823000463157 -0.411765071649246 0.680511624783008 1 FALSE ActinomycesActinomyces oris (SP249) 0.000379498596176447 0.407542070195124 0.000931188762904282 0.99925701897026 1 FALSE LeptotrichiaLeptotrichia sp._HMT_215 (SP259) -0.411981668023016 0.258567310048414 -1.59332464705564 0.111087380255328 1 FALSE ArachniaArachnia propionica (SP260) 0.0268772814804911 0.320437658227779 0.0838767878567683 0.933154395120027 1 FALSE ActinomycesActinomyces sp._Oral_Taxon_180 (SP262) -0.46625859449714 0.356413617480232 -1.30819523056804 0.190807099370864 1 FALSE CapnocytophagaCapnocytophaga endodontalis (SP268) -1.00336303962431 0.346566344545798 -2.89515429127804 0.00378972208974932 0.485084427487913 FALSE AlloprevotellaAlloprevotella tannerae (SP27) 0.435319127517532 0.456517545373723 0.953564943842766 0.340303907798514 1 FALSE SolobacteriumSolobacterium moorei (SP279) -0.0790399750935123 0.334082590125026 -0.23658812949197 0.812976330086188 1 FALSE DialisterDialister invisus (SP28) -0.254228120078727 0.452900111210334 -0.561333755028952 0.574570034556511 1 FALSE ActinomycesActinomyces dentalis (SP286) -0.298487078034781 0.337840381821946 -0.883515097943779 0.376958028809926 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP287) 0.817552397536998 0.364129908877827 2.24522176729873 0.0247538993843382 1 FALSE PrevotellaPrevotella sp._HMT_317 (SP29) 0.0962618311410187 0.468202030449364 0.205598918587837 0.837104222322229 1 FALSE ActinomycesActinomyces israelii (SP293) 0.182184095298187 0.31082162068999 0.586137138381037 0.557783360854453 1 FALSE FretibacteriumFretibacterium sp._HMT_360 (SP294) 0.151158897467106 0.298071776030639 0.507122477277312 0.612068884651258 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP296) 0.47155201506473 0.382099973914598 1.23410637858385 0.217163266994832 1 FALSE StreptococcusStreptococcus sp._HMT_064 (SP303) -0.240957150045786 0.379272524707028 -0.635314013932106 0.525223635498746 1 FALSE ParvimonasParvimonas micra (SP31) 0.629576335863844 0.433551047134779 1.45213888889104 0.146462990654625 1 FALSE TreponemaTreponema denticola (SP311) 0.318468648055768 0.354824791043614 0.897537759746395 0.369432033924807 1 FALSE RothiaRothia mucilaginosa (SP318) 0.224924240001636 0.321627073304301 0.699332421524193 0.484344309851732 1 FALSE AggregatibacterAggregatibacter sp._HMT_458 (SP32) -0.252943619745276 0.308831316959357 -0.819034877148043 0.412766515060506 1 FALSE CapnocytophagaCapnocytophaga granulosa (SP320) -0.283492560416791 0.339059037358582 -0.836115629376292 0.403089856558939 1 FALSE MogibacteriumMogibacterium timidum (SP324) 0.336635826251833 0.393616127595793 0.855238905753188 0.392418901839166 1 FALSE CapnocytophagaCapnocytophaga sputigena (SP33) 0.362441075517801 0.324765800524881 1.11600751967119 0.264418915837649 1 FALSE GemellaGemella morbillorum (SP332) 0.258714373459469 0.391273764635754 0.661210632663582 0.508477243423804 1 FALSE CapnocytophagaCapnocytophaga leadbetteri (SP34) -0.239002524277917 0.375863445318037 -0.635875947116075 0.524857281123634 1 FALSE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP35) -0.615829771486655 0.356300130813016 -1.72840175523213 0.0839162210343971 1 FALSE PrevotellaPrevotella loescheii (SP36) 0.0523725165251733 0.302940164909466 0.17288072890838 0.862745179664495 1 FALSE ActinomycesActinomyces sp._HMT_448 (SP361) 0.0872346056922821 0.580064591295394 0.150387744746616 0.880458709586849 1 FALSE StreptococcusStreptococcus salivarius (SP374) -0.383166374837389 0.313974069415232 -1.22037585954479 0.222322424351536 1 FALSE TreponemaTreponema sp._HMT_231 (SP40) -0.488522674446916 0.291945721245858 -1.67333390728311 0.0942615809741321 1 FALSE PrevotellaPrevotella intermedia (SP41) 0.760254580525902 0.428123718201464 1.77578243905689 0.07576878325622 1 FALSE AlloprevotellaAlloprevotella rava (SP42) 0.552262484279098 0.328653334573222 1.68037998152749 0.0928834083912076 1 FALSE PeptidiphagaPeptidiphaga sp._HMT_183 (SP422) -0.860916646640174 0.437946332688366 -1.96580398642768 0.0493212571546045 1 FALSE GemellaGemella moribillum (SP45) 0.337439458488528 0.331813876614272 1.01695402835968 0.309175299332766 1 FALSE LeptotrichiaLeptotrichia wadei (SP49) 0.00463913298882748 0.48798298297228 0.00950675156861158 0.992414823956107 1 FALSE StreptococcusStreptococcus parasanguinis_II (SP5) -0.581198335700947 0.514787416712928 -1.12900649245095 0.258895094864656 1 FALSE FusobacteriumFusobacterium nucleatum (SP51) 0.395631018172244 0.445184199230925 0.888690611337315 0.37416937823534 1 FALSE StreptococcusStreptococcus mitis (SP52) -0.467132920796903 0.482416201227772 -0.968319305214103 0.33288492621748 1 FALSE StreptococcusStreptococcus constellatus (SP53) 0.290664641060249 0.347259913242348 0.837023307258035 0.40257946716125 1 FALSE PrevotellaPrevotella maculosa (SP55) -0.188496957009277 0.324448258205312 -0.580976942369638 0.561255993769846 1 FALSE StreptococcusStreptococcus sp._str._C300 (SP56) -0.355199697627635 0.508566793874169 -0.698432736675135 0.484906609412805 1 FALSE StreptococcusStreptococcus oralis (SP58) 0.444724536603425 0.459688879593344 0.967446802273839 0.333320722924578 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_150 (SP6) -0.0368388882164095 0.305132877697995 -0.120730641988933 0.903904387715247 1 FALSE PrevotellaPrevotella denticola (SP60) 0.385853567907757 0.457681474798368 0.843061362878507 0.399194126022361 1 FALSE ActinomycesActinomyces sp._HMT_175 (SP62) -0.103590413538262 0.434223058921758 -0.238564975788005 0.811442926271859 1 FALSE TreponemaTreponema socranskii (SP63) -0.181856976737006 0.417068291246748 -0.436036449074992 0.662810284526298 1 FALSE StreptococcusStreptococcus gordonii (SP64) -0.201738377683459 0.502194173597525 -0.401713895321171 0.687894597065556 1 FALSE PrevotellaPrevotella sp._HMT_314 (SP65) -0.444424901801375 0.317939464492372 -1.39782867946561 0.162164519873056 1 FALSE CampylobacterCampylobacter concisus (SP67) -0.23322942042601 0.322861281885429 -0.722382749222849 0.470059189955332 1 FALSE ActinomycesActinomyces sp._HMT_170 (SP69) -0.26117652105053 0.350077461877468 -0.746053515270129 0.455635088201777 1 FALSE TreponemaTreponema sp._HMT_237 (SP70) -0.186573957182126 0.363327128245259 -0.513515074096481 0.607591069063621 1 FALSE ParvimonasParvimonas sp._Oral_Taxon_110 (SP72) 0.601997866123652 0.320380441351079 1.8790094163831 0.060243207487315 1 FALSE PrevotellaPrevotella melaninogenica (SP79) 0.145509089063795 0.361770997214304 0.402213251433196 0.687527090650639 1 FALSE SelenomonasSelenomonas noxia (SP8) -0.35827846726624 0.406978580826168 -0.88033740384797 0.378676555596743 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP82) -0.519176403695349 0.376124909925331 -1.3803297521518 0.167485138371631 1 FALSE FusobacteriumFusobacterium nucleatum_ss_animalis (SP84) -0.649677688207457 0.506416559964434 -1.28289187117634 0.199529961137069 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP86) 0.206983952746547 0.396765003827551 0.521678955426498 0.601893879532454 1 FALSE VeillonellaVeillonella parvula (SP88) 0.0623761150534416 0.229126426111107 0.272234486925548 0.785441726115181 1 FALSE PrevotellaPrevotella oulorum (SP9) 0.243980812049547 0.367902614013412 0.663166834798986 0.507223709745379 1 FALSE MegasphaeraMegasphaera micronuciformis (SP92) -0.0868747235668771 0.285914974908976 -0.303848105873205 0.761243615090819 1 FALSE StreptococcusStreptococcus intermedius (SP94) 0.0354441394731712 0.478973466996158 0.0740002148667152 0.941010214292118 1 FALSE ActinomycesActinomyces sp._HMT_897 (SP95) -0.0719383406527951 0.36119317420718 -0.199168605028874 0.842130856967525 1 FALSE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP97) -0.490947720503758 0.286815738433653 -1.71171820341834 0.0869486123106996 1 FALSE CapnocytophagaCapnocytophaga ochracea (SP98) -0.0897038190965654 0.341561377832955 -0.262628695509116 0.792836780414369 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP99) 0.484634137607016 0.436037696107328 1.11145009235102 0.26637466086474 1 FALSE ActinomycesActinomyces viscosus_nov_95.849% (SPN129) -0.0951252244188185 0.337183151695898 -0.282117371346629 0.777853513609795 1 FALSE ActinomycesActinomyces sp._HMT_175_nov_97.633% (SPN13) 0.213432612339995 0.370684515228247 0.575779682106698 0.564764108490544 1 FALSE FusobacteriumFusobacterium nucleatum_ss_vincentii_nucleatum_subsp._vincentii (SPP1) 0.0117676163134522 0.386001911636885 0.0304859016463163 0.975679537012579 1 FALSE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP26) -0.250271460524228 0.403843699048485 -0.619723574031004 0.535439792522303 1 FALSE GranulicatellaGranulicatella adiacens_paradiacens (SPP3) 0.218209221628929 0.431773688782189 0.505378690962816 0.613292882612032 1 FALSE Eubacterium_[XIVa][G-1]_LachnoanaerobaculumEubacterium_[XIVa][G-1]_Lachnoanaerobaculum saburreum (SPP6) -0.489761757935455 0.431428036408378 -1.13521078048776 0.256287013638529 1 FALSE FusobacteriumFusobacterium nucleatum_nucleatum_ss_animalis (SPP60) -0.332386064160443 0.465249929587791 -0.714424748983703 0.474964572786658 1 FALSE