CompareDUS+OSS 24 Weeks P2...1 CompareDUS+OSS 24 Weeks P2...2 CompareDUS+OSS 24 Weeks P2...3 CompareDUS+OSS 24 Weeks P2...4 CompareDUS+OSS 24 Weeks P2...5 CompareDUS+OSS 24 Weeks P2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) 0.646306214708648 0.418131499563536 1.54570085100809 0.122176831644415 1 FALSE Leptotrichia buccalis (SP10) -0.293318729313359 0.358373581721608 -0.818471964100342 0.413087744371558 1 FALSE Capnocytophaga endodontalis (SP101) 0.0195174247248221 0.469280917394177 0.0415900668478029 0.966825491898857 1 FALSE Prevotella veroralis (SP102) -0.766279926858062 0.320361274691898 -2.39192432854133 0.0167602975352084 1 FALSE Filifactor alocis (SP107) -0.165883388718823 0.364398685545162 -0.45522499201843 0.648947382377746 1 FALSE Actinomyces israelii (SP109) 0.810935856359512 0.413162394432914 1.96275330786715 0.0496748456440194 1 FALSE Prevotella pleuritidis (SP11) -0.165955579106285 0.434035783162634 -0.382354601957095 0.702198359169539 1 FALSE Prevotella oulorum (SP111) 0.133855909909363 0.38565218111414 0.347089726091154 0.728523911683278 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.366816560667607 0.393304059729222 0.932653888495708 0.350998700191721 1 FALSE Treponema sp._HMT_231 (SP114) 0.119770451135024 0.365846362461397 0.327379095227882 0.74338117569393 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) 0.17831280776486 0.334115936394561 0.53368543173675 0.593559190045504 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) -0.85745428036849 0.496865820575549 -1.72572603077275 0.0843967126803842 1 FALSE Prevotella sp._HMT_317 (SP118) -0.598086166897109 0.454956919753361 -1.31459956081411 0.188644517809782 1 FALSE Prevotella loescheii (SP119) -0.00789201114321627 0.32317626459084 -0.0244201446947474 0.980517479973655 1 FALSE Streptococcus oralis (SP12) -0.632171865641347 0.520381966361151 -1.21482277731856 0.224433691574722 1 FALSE Treponema sp._HMT_257 (SP120) 0.165921493737385 0.276462237251837 0.600159701327465 0.548399807776824 1 FALSE Schaalia sp._HMT_180 (SP121) 0.486365782954391 0.431959347778076 1.12595267461202 0.260185551588753 1 FALSE Schaalia sp._HMT_178 (SP122) 0.249758268551312 0.327709255702421 0.762133702986124 0.445980209505119 1 FALSE Streptococcus cristatus (SP123) -0.48091353159942 0.510820172679546 -0.941453680415071 0.346472415565596 1 FALSE Prevotella salivae (SP124) -0.269904230222922 0.363084573331155 -0.743364631955193 0.457260951107716 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.244995389302879 0.429206830480264 0.570809623483252 0.568128698824522 1 FALSE Selenomonas sp._HMT_134 (SP127) -0.0858890196612639 0.327334065507408 -0.262389493522849 0.793021171959361 1 FALSE Prevotella maculosa (SP129) -0.356010716852788 0.370741799287222 -0.960265925064949 0.336921394941802 1 FALSE Selenomonas sputigena (SP13) 0.0704685510428945 0.461327628727639 0.152751638216965 0.878594137151909 1 FALSE Lautropia mirabilis (SP131) 0.165854262854602 0.428928896386506 0.386670761172386 0.698999964810683 1 FALSE Porphyromonas endodontalis (SP132) -0.419870515502425 0.42768832414554 -0.981720780760771 0.326237424833486 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.330246740348524 0.450967409027529 -0.732307332498088 0.463981004852777 1 FALSE Olsenella sp._HMT_807 (SP136) 1.34900543505993 0.522232091873848 2.58315307705334 0.00979018737663867 1 FALSE Actinomyces sp._HMT_525 (SP137) 0.324021356662933 0.348839520848897 0.928855067437401 0.352964201612265 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) -0.353544707889712 0.426168780340503 -0.829588473391303 0.406771495993738 1 FALSE Capnocytophaga sp._HMT_864 (SP140) -0.231669500022635 0.293188118844388 -0.790173561383622 0.429426414116461 1 FALSE Schaalia odontolytica (SP141) 0.237382910595431 0.357670731999124 0.663691181183962 0.506887984829272 1 FALSE Streptococcus intermedius (SP147) 0.0373384784708451 0.539126369786817 0.0692573774226803 0.944784752122497 1 FALSE Campylobacter gracilis (SP151) 0.593917446946384 0.405058502988788 1.46625102933051 0.142579911232339 1 FALSE Actinomyces sp._HMT_448 (SP153) 0.00489055138421526 0.668230538889878 0.00731865890526323 0.994160607182762 1 FALSE Streptococcus gordonii (SP155) 1.13354006327895 0.594885627958239 1.90547562422962 0.0567182730901727 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP157) 0.0537122654635657 0.296398211595626 0.181216563940828 0.856197593702463 1 FALSE Selenomonas noxia (SP161) -0.285842373786777 0.413167587881541 -0.69183155254843 0.489043119283477 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP162) 0.10714297444028 0.260291548285939 0.41162678982792 0.680612992600927 1 FALSE Selenomonas infelix (SP164) -0.49090861210697 0.26937329705423 -1.82241008101164 0.0683927860991042 1 FALSE Mogibacterium timidum (SP165) -0.33545853670805 0.373619609690293 -0.897861161479515 0.369259572809611 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) -0.0254295103214455 0.279042921282185 -0.0911311786896382 0.92738835870016 1 FALSE Leptotrichia hongkongensis (SP167) -0.0808285750073253 0.510953644900093 -0.15819160077257 0.874305822033257 1 FALSE Prevotella sp._HMT_314 (SP17) -0.373727704087374 0.350983386803362 -1.06480169187254 0.286965679370694 1 FALSE Capnocytophaga ochracea (SP172) -0.223086551977353 0.360272329703168 -0.619216447072568 0.53577377832231 1 FALSE Actinomyces oris (SP173) -0.202736105347228 0.489051015929153 -0.41455001368732 0.67847134721203 1 FALSE Mogibacterium vescum (SP174) -0.259452400435333 0.262275121549583 -0.989237556739758 0.322546927221006 1 FALSE Actinomyces naeslundii (SP179) 0.319513666035686 0.441145195696859 0.72428232054293 0.468892428601027 1 FALSE Treponema sp._HMT_237 (SP18) -0.532796228740852 0.364358883576121 -1.46228417298776 0.143663353786037 1 FALSE Streptococcus anginosus (SP180) -0.47467192490288 0.499775853605282 -0.949769624680128 0.342229323299105 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) 0.391255302034689 0.433406243672127 0.9027449598319 0.366661268804219 1 FALSE Oribacterium sp._HMT_078 (SP186) -0.335694601416386 0.435307870977327 -0.771165935186756 0.440608582685008 1 FALSE Actinomyces sp._HMT_171 (SP189) 0.742499824179512 0.503273942899499 1.47533929513967 0.140121346946485 1 FALSE Catonella morbi (SP19) 0.233717286977628 0.403183513637647 0.579679672090156 0.562130654154823 1 FALSE Actinomyces sp._HMT_175 (SP190) -0.283181872923845 0.443540552456883 -0.63845768184043 0.523175792890359 1 FALSE Leptotrichia sp._HMT_212 (SP192) -0.0690273197679301 0.2894620727029 -0.238467579269975 0.811518458097604 1 FALSE Tannerella forsythia (SP193) 0.0163739636899908 0.374862509405333 0.0436799180477283 0.965159547012713 1 FALSE Bergeyella sp._HMT_900 (SP196) 0.564742311800327 0.328769107131795 1.71774749984017 0.0858426812883595 1 FALSE Alloprevotella rava (SP199) -0.162563070451385 0.313693679432705 -0.518222333154336 0.60430315445011 1 FALSE Granulicatella adiacens (SP2) 0.0370818564979194 0.532314101629045 0.0696616084083392 0.944462999566253 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.162212590892678 0.318648782659719 -0.509063896427631 0.610707437230168 1 FALSE Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP201) -0.0556739225271666 0.26474234275563 -0.210294741474568 0.833437639224706 1 FALSE Peptostreptococcus stomatis (SP208) -0.079583215257747 0.385973153720603 -0.206188473189395 0.836643691463097 1 FALSE Prevotella marshii (SP209) 0.316748665380339 0.284938936783499 1.11163700179386 0.266294256508576 1 FALSE Tannerella sp._HMT_286 (SP212) -0.576916087193996 0.292067938022245 -1.97528044707891 0.0482363308978488 1 FALSE Capnocytophaga sputigena (SP216) 0.390567691080616 0.340218513992702 1.14799070308383 0.25097240180702 1 FALSE Ruminococcaceae_[G-1] bacterium_HMT_075 (SP218) 0.0636260945914662 0.313885663654667 0.202704685045657 0.839365861063973 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.63014503249306 0.580064149324439 1.08633680124336 0.277330010955826 1 FALSE Streptococcus constellatus (SP222) 0.374186637177273 0.410932927637668 0.91057837425772 0.362517569304607 1 FALSE Prevotella melaninogenica (SP223) -0.578108919752338 0.330232734259934 -1.75061058392017 0.0800130109162743 1 FALSE Lachnoanaerobaculum orale (SP224) -0.223928699140909 0.274972403210535 -0.814367902110731 0.415434220944053 1 FALSE Capnocytophaga sp._HMT_336 (SP225) -0.265926208954751 0.331894540846028 -0.801237068488327 0.422994415310883 1 FALSE Neisseria bacilliformis (SP231) 0.312216769680825 0.332820146776957 0.938094561595337 0.348195816415058 1 FALSE Kingella oralis (SP232) 1.457049838016 0.46517529893619 3.13225969080501 0.00173466367404444 0.287954169891377 FALSE Arachnia propionica (SP235) 0.571704871586166 0.384011531713202 1.48877006124166 0.136547928597086 1 FALSE Scardovia wiggsiae (SP236) -0.274615759666255 0.450053666586252 -0.610184473663487 0.541739613671097 1 FALSE Porphyromonas catoniae (SP24) -0.323961634069968 0.324226808300987 -0.999182133542848 0.317706469196848 1 FALSE Dialister invisus (SP25) -0.38829052944887 0.448951663565026 -0.864882705557966 0.387103170797034 1 FALSE Treponema sp._HMT_238 (SP250) -0.222146849334228 0.276293587662453 -0.804024629068208 0.421382751188289 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.0285696344334486 0.546589374200072 -0.0522689166346492 0.958314420380354 1 FALSE Selenomonas dianae (SP255) 0.284695561194957 0.313890883280604 0.90698894539238 0.36441264310602 1 FALSE Cardiobacterium hominis (SP257) 0.691705639523411 0.387023338186266 1.78724529317792 0.0738978517250102 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.331750794457986 0.507361479697733 -0.65387461944417 0.513192586890194 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.155465533472109 0.283207535353489 -0.548945610779965 0.58304277578558 1 FALSE Treponema lecithinolyticum (SP264) -0.117196616643139 0.288239991949201 -0.406593879810383 0.684306293034341 1 FALSE Prevotella saccharolytica (SP268) 0.26294848353769 0.270184396343202 0.973218613275057 0.33044466183547 1 FALSE Mycoplasma faucium (SP271) -0.23044896285648 0.269577619411405 -0.854851984224959 0.392633095206394 1 FALSE Ruminococcaceae_[G-2] bacterium_HMT_085 (SP275) -0.0904217269232098 0.301475113769982 -0.299930982005365 0.76422980141148 1 FALSE Peptidiphaga gingivicola (SP286) 0.172591866940434 0.374293285926943 0.46111398047926 0.644716831942476 1 FALSE Leptotrichia sp._HMT_417 (SP288) 0.443406960826919 0.350343720404086 1.26563410446031 0.205644110134642 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.625683524124922 0.443182238808681 1.41179738115594 0.158009629804632 1 FALSE Neisseria elongata (SP295) 0.042100664553682 0.27220419673781 0.154665743799071 0.877084837446451 1 FALSE Mogibacterium neglectum (SP298) -0.0709528966379817 0.290374073934037 -0.244349971320441 0.806959784599347 1 FALSE Stomatobaculum longum (SP3) -0.763014625329257 0.376259645608411 -2.0278938606224 0.0425710818750532 1 FALSE Tannerella sp._HMT_808 (SP30) -0.41752443823749 0.28461947477758 -1.46695667456969 0.14238784162221 1 FALSE Porphyromonas pasteri (SP31) -0.279520287582953 0.355018825656475 -0.78733933916345 0.431083246708116 1 FALSE Bulleidia extructa (SP316) -0.422944819797005 0.267678405603329 -1.580048337645 0.114095797113449 1 FALSE Neisseria sicca (SP318) -0.212788342746857 0.331803776399498 -0.641307778518637 0.521322736443661 1 FALSE Prevotella oris (SP32) -0.377104043864035 0.474969704017816 -0.793953889425103 0.427222275588606 1 FALSE Megasphaera micronuciformis (SP320) -0.113728418504742 0.306538985564732 -0.37100800831327 0.710631566962152 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.30902206262129 0.326668110243985 0.945981725582227 0.344157907148065 1 FALSE Shuttleworthia satelles (SP326) 0.376350350697675 0.33453044275056 1.12501076913439 0.260584470845118 1 FALSE Prevotella sp._HMT_301 (SP328) 0.0949811776685432 0.229778042607135 0.413360548252811 0.679342474739956 1 FALSE Prevotella buccae (SP329) 0.245699750927277 0.316732809620906 0.775731921240974 0.437907288003097 1 FALSE Actinomyces dentalis (SP346) 1.45100965870489 0.483072423130805 3.00371039460472 0.00266709068810069 0.437402872848512 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) 0.14023605114602 0.287864489678116 0.487159952597242 0.626144982951116 1 FALSE Gemella haemolysans (SP354) 0.226410843731555 0.422448243288486 0.535949308178189 0.591993585142506 1 FALSE Cardiobacterium valvarum (SP356) 0.0381149744189269 0.314891684242181 0.121041540079582 0.903658132835629 1 FALSE Alloprevotella tannerae (SP36) -0.177719577580205 0.473416145383739 -0.375398218487352 0.707364329628297 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -1.06537002466143 0.521182482513499 -2.04414012444064 0.0409397062438708 1 FALSE Solobacterium moorei (SP371) 0.24076406452347 0.357456087196311 0.673548648763798 0.500598309759535 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.244246563810995 0.313113466501761 0.780057678578387 0.43535692574371 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP386) -0.0230225106476688 0.31647352280516 -0.0727470356559428 0.942007418636137 1 FALSE Streptococcus mutans (SP4) 0.889986170702266 0.700575689416939 1.27036405080366 0.20395498243427 1 FALSE Prevotella oralis (SP405) 0.150781706760932 0.338891769861144 0.44492584409091 0.656373345192645 1 FALSE Rothia mucilaginosa (SP41) 0.265306422725915 0.376431858984184 0.704792690612996 0.480939257980669 1 FALSE Lancefieldella rimae (SP42) 0.0791060529103414 0.457341725618992 0.172969244831695 0.862675602279814 1 FALSE Fusobacterium nucleatum (SP43) 0.0842224765297717 0.258080068825915 0.326342428971464 0.744165290110518 1 FALSE Campylobacter concisus (SP44) 0.308834767201513 0.399304524774632 0.773431674423974 0.439266950503272 1 FALSE Capnocytophaga sp._HMT_380 (SP45) -0.0778726252953136 0.305924762737185 -0.25454829023505 0.799072002098978 1 FALSE Campylobacter showae (SP46) 0.754895413233198 0.418220973243488 1.80501567718771 0.0710722288444992 1 FALSE Peptococcus sp._HMT_167 (SP47) 0.13935645002893 0.28390529261119 0.490855414308108 0.623528713421881 1 FALSE Eikenella corrodens (SP48) 0.619355979513006 0.380962808512059 1.62576494522405 0.103999668227975 1 FALSE Actinomyces sp._HMT_170 (SP49) 0.201860272055496 0.440299091778609 0.45846170438388 0.646620769540065 1 FALSE Schaalia meyeri (SP51) 0.789836792571209 0.390317296614204 2.02357620177898 0.0430137757259877 1 FALSE Veillonella parvula (SP52) -0.141257413584099 0.527291503713779 -0.26789245149828 0.788782104238056 1 FALSE Streptococcus mitis (SP57) -0.58751921706316 0.540923537070155 -1.08614097335343 0.277416627197686 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) -0.234082981901436 0.411814382015856 -0.568418666573969 0.569750718385812 1 FALSE Prevotella denticola (SP59) 0.574101616419412 0.494838221031955 1.16018042264835 0.24597535601154 1 FALSE Corynebacterium matruchotii (SP6) 1.20955800591896 0.570622157190809 2.11971790908655 0.0340298417610327 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) 0.319262600652911 0.366782019526675 0.870442343561206 0.384058714894719 1 FALSE Rothia aeria (SP61) 0.289965671865005 0.390911615370166 0.741767858676768 0.458227997486987 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.0929976278558424 0.318140198107555 -0.29231649571175 0.770044647591026 1 FALSE Haemophilus parainfluenzae (SP63) 0.0547447162619466 0.566062258817472 0.0967114754767622 0.922955526440175 1 FALSE Prevotella multiformis (SP64) -0.270840267785727 0.319404937737658 -0.847952663800648 0.396464333482239 1 FALSE Fretibacterium fastidiosum (SP65) 0.0782342488595308 0.386268673213335 0.202538425414381 0.839495821687584 1 FALSE Rothia dentocariosa (SP66) 1.68853509977944 0.549385554205009 3.07349744975156 0.00211565496006745 0.349083068411129 FALSE Lachnoanaerobaculum saburreum (SP67) 0.327337056943521 0.480425009075731 0.681348911400908 0.495650741202004 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.0409149417720381 0.345310797365571 -0.118487293430105 0.905681562546659 1 FALSE Prevotella sp._HMT_300 (SP69) -0.515490278998795 0.417176539484861 -1.23566459330463 0.216583263775607 1 FALSE Streptococcus sanguinis (SP7) 1.29537805619701 0.584494901018981 2.21623499869495 0.0266754121068796 1 FALSE Bergeyella sp._HMT_322 (SP70) -0.00518919393684286 0.405788531197994 -0.0127879265624462 0.989796988916781 1 FALSE Treponema socranskii (SP72) -0.10573567282001 0.453213209355242 -0.233302275038351 0.815526692122321 1 FALSE Prevotella intermedia (SP73) -0.519787054650918 0.372768780662922 -1.39439535072262 0.163198251303349 1 FALSE Leptotrichia hofstadii (SP74) 0.0186471542924431 0.330358141195781 0.0564452694428747 0.954987094615581 1 FALSE Gemella morbillorum (SP77) -0.223155929326377 0.421263661260083 -0.529729833945024 0.596299259900117 1 FALSE Anaeroglobus geminatus (SP79) 0.256597074986719 0.35205361374432 0.72885794938345 0.466088559470181 1 FALSE Capnocytophaga granulosa (SP8) 0.0179082244856045 0.432323409942403 0.0414232125158116 0.966958507764796 1 FALSE Veillonella atypica (SP80) -0.328668116074604 0.274739269263975 -1.19629100330326 0.231583018384851 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP81) -0.457258917416159 0.280995029739212 -1.62728471688818 0.103676642273537 1 FALSE Capnocytophaga gingivalis (SP82) -0.0961286589237567 0.446705826807246 -0.215194548973807 0.829615640665927 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) -0.24998419334497 0.293819101673508 -0.85080987560418 0.394874974884196 1 FALSE Treponema denticola (SP84) -0.0900777896260642 0.362743756131818 -0.248323473811443 0.803884138218655 1 FALSE Leptotrichia wadei (SP85) -0.19363400956495 0.53195654850073 -0.364003432443288 0.715855446242655 1 FALSE Streptococcus salivarius (SP87) -0.123573926053995 0.470295892251594 -0.2627578256369 0.792737243814882 1 FALSE Streptococcus sp._HMT_064 (SP9) 0.254971403422597 0.542670116466848 0.469846036635727 0.638465020770448 1 FALSE Treponema sp._HMT_262 (SP91) 0.0373784355879902 0.278190799402343 0.134362587361958 0.893115864284855 1 FALSE Capnocytophaga leadbetteri (SP92) 0.721565084704533 0.463494942974571 1.55679170968672 0.119519946148137 1 FALSE Parvimonas micra (SP93) -0.0872847156389698 0.489265028256724 -0.178399661937763 0.858409114780262 1 FALSE Corynebacterium durum (SP96) 1.03438291117164 0.429224015375023 2.40989057955639 0.0159573055320797 1 FALSE Lancefieldella parvula (SP97) 0.00472876833766628 0.458539361398838 0.0103126770256767 0.991771820067207 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) 0.664461310763525 0.482751766270423 1.37640368650938 0.168696687284744 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.438981541554418 0.412844611716222 1.06330936409596 0.287641680010393 1 FALSE Fusobacterium nucleatum_nov_97.018% (SPN283) -0.326819141515228 0.248052290002736 -1.31754131966136 0.187657240326201 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) -0.215859647075459 0.306790874368263 -0.703605175740485 0.481678687233789 1 FALSE Veillonella dispar_parvula (SPP13) -0.695704425393039 0.461100769315947 -1.50879042432554 0.131352348602573 1 FALSE