CompareBaseline B P1...1 CompareBaseline B P1...2 CompareBaseline B P1...3 CompareBaseline B P1...4 CompareBaseline B P1...5 CompareBaseline B P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) -0.227475592849416 0.348207492492878 -0.653275985593757 0.513578371205205 1 FALSE Leptotrichia buccalis (SP10) -0.13839513938904 0.243159507206191 -0.569153725384408 0.569251821080312 1 FALSE Capnocytophaga endodontalis (SP101) 0.0998448880478135 0.274789077695859 0.363351006834135 0.716342695198611 1 FALSE Prevotella veroralis (SP102) 0.0926514788163065 0.252872681412479 0.366395762083829 0.714069781583568 1 FALSE Filifactor alocis (SP107) 0.161251487353635 0.277368981937164 0.581360923011086 0.560997228303129 1 FALSE Actinomyces israelii (SP109) 0.706272491625844 0.389335632020252 1.81404534684127 0.0696707446406231 1 FALSE Prevotella pleuritidis (SP11) 0.274952493701368 0.343681126989932 0.800022090562519 0.423697998381173 1 FALSE Prevotella oulorum (SP111) -0.39155221220707 0.305456222934572 -1.28186032173566 0.199891649046656 1 FALSE Parvimonas sp._HMT_110 (SP112) -0.298763040245703 0.259202078729165 -1.1526259423169 0.249063950402504 1 FALSE Treponema sp._HMT_231 (SP114) -0.345935880044631 0.256778098936516 -1.34721723339091 0.177910279223035 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) 0.116992261896814 0.245620511322888 0.47631307852388 0.63385134927206 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) 0.200221043006694 0.458697122861813 0.436499452530929 0.662474396349991 1 FALSE Prevotella sp._HMT_317 (SP118) -0.362316137728193 0.350389684337845 -1.03403768410844 0.301118546492404 1 FALSE Streptococcus oralis (SP12) 0.168636644465849 0.446643779007742 0.377564073187115 0.705754457878909 1 FALSE Treponema sp._HMT_257 (SP120) 0.375719657818056 0.24053129790021 1.56204062048479 0.118278419871399 1 FALSE Schaalia sp._HMT_180 (SP121) -0.110217918035482 0.389869801151223 -0.28270442519535 0.777403423760696 1 FALSE Schaalia sp._HMT_178 (SP122) 0.347810536366575 0.290181074462919 1.1985982787138 0.230684187824616 1 FALSE Streptococcus cristatus (SP123) 0.381189514042937 0.417167818185792 0.913755801443841 0.360845175548532 1 FALSE Prevotella salivae (SP124) -0.13306355353487 0.248021140128118 -0.536500854185796 0.5916124457273 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.336078060130808 0.345857434077083 0.971724262708503 0.331187743002646 1 FALSE Selenomonas sp._HMT_134 (SP127) -0.165551321407218 0.220964814396937 -0.749220285858834 0.453724444269785 1 FALSE Prevotella maculosa (SP129) -0.346782408610098 0.259057263317084 -1.33863225516144 0.180690420203251 1 FALSE Selenomonas sputigena (SP13) -0.413550289831141 0.38186985578805 -1.0829613376466 0.278825584247606 1 FALSE Lautropia mirabilis (SP131) 0.0152004295880732 0.334210916899091 0.0454815471891443 0.963723482886668 1 FALSE Porphyromonas endodontalis (SP132) 0.219792139308129 0.361378118059692 0.608205445554466 0.543051223376319 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.430371540329426 0.365358399229978 -1.17794346930704 0.238819143798966 1 FALSE Olsenella sp._HMT_807 (SP136) -0.446583300457037 0.438979809699992 -1.01732082111531 0.309000834818011 1 FALSE Actinomyces sp._HMT_525 (SP137) 0.0729211976519833 0.412779965002337 0.176658762136313 0.859776434372432 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) -0.194696526031198 0.313841574740369 -0.620365629353802 0.535017095587828 1 FALSE Capnocytophaga sp._HMT_864 (SP140) -0.0818936950016041 0.228801813450988 -0.357924151764413 0.720400075978606 1 FALSE Schaalia odontolytica (SP141) -0.189172320445212 0.329761326542928 -0.573664360306927 0.566194950049278 1 FALSE Actinomyces sp._HMT_896 (SP145) 0.0401355786342859 0.270443180202147 0.148406695278047 0.882021816515786 1 FALSE Actinomyces viscosus (SP146) 0.404929662840447 0.265410997868354 1.52567024762589 0.127092007708559 1 FALSE Streptococcus intermedius (SP147) -0.257647334716239 0.40741335888481 -0.632397856126964 0.527126934490298 1 FALSE Campylobacter gracilis (SP151) -0.73319143445937 0.36921109008506 -1.98583264194598 0.047051909982277 1 FALSE Actinomyces sp._HMT_448 (SP153) -0.601408451090374 0.573323931428456 -1.04898543061327 0.294184823985833 1 FALSE Streptococcus gordonii (SP155) -0.287438841563643 0.44676456084389 -0.64337878774606 0.519978344084183 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP157) -0.0601126463973492 0.208956585861317 -0.2876800755026 0.773591643016124 1 FALSE Selenomonas noxia (SP161) -0.30995952257699 0.295604517275698 -1.0485615221093 0.294379972988922 1 FALSE Selenomonas infelix (SP164) -0.198937767737505 0.236532003984825 -0.841060678411484 0.400313942231783 1 FALSE Mogibacterium timidum (SP165) 0.113282433389801 0.285249189724107 0.39713498748013 0.691267920625611 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) 0.273144215494776 0.251352838675817 1.08669636250683 0.277171022104451 1 FALSE Leptotrichia hongkongensis (SP167) -0.495154093005369 0.388848803423807 -1.27338463856786 0.202881585693717 1 FALSE Prevotella sp._HMT_314 (SP17) -0.132414048976414 0.262526486794731 -0.504383578941307 0.613991855148453 1 FALSE Capnocytophaga ochracea (SP172) -0.0819205028847791 0.24073248475094 -0.340296836006712 0.733632999636133 1 FALSE Actinomyces oris (SP173) 0.369399949134344 0.452868668452909 0.815688906888368 0.414678085216345 1 FALSE Mogibacterium vescum (SP174) -0.251987265524574 0.199530954199688 -1.26289811290327 0.206625798224111 1 FALSE Actinomyces naeslundii (SP179) -0.180370457216323 0.337045849618866 -0.535151100125658 0.592545376996333 1 FALSE Treponema sp._HMT_237 (SP18) -0.589122424878559 0.275985074616037 -2.13461697411779 0.0327923097928723 1 FALSE Streptococcus anginosus (SP180) 0.043686906911536 0.420885480357949 0.103797609920831 0.917329963232098 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) 0.17721160458433 0.362061126926028 0.489452170932826 0.62452160825246 1 FALSE Oribacterium sp._HMT_078 (SP186) -0.340677598723031 0.339565078039637 -1.00327631065543 0.315727562697117 1 FALSE Selenomonas flueggei (SP188) 0.272950796786639 0.23598818253849 1.15662908985758 0.247423932010811 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.205932283857988 0.388064285801309 -0.530665385588786 0.595650676748449 1 FALSE Catonella morbi (SP19) -0.187909413996871 0.28852560332737 -0.651274659267113 0.514869203406209 1 FALSE Actinomyces sp._HMT_175 (SP190) 0.670470286033839 0.421156634787639 1.59197369969468 0.111390614151917 1 FALSE Leptotrichia sp._HMT_212 (SP192) 0.0122817156456893 0.246436671369046 0.0498372079831293 0.960252115827417 1 FALSE Tannerella forsythia (SP193) 0.44561437130879 0.283089879281245 1.57410915727609 0.115462215887974 1 FALSE Slackia exigua (SP195) -0.0665142709148328 0.256777236903893 -0.259034919593468 0.795608297810817 1 FALSE Bergeyella sp._HMT_900 (SP196) -0.0235995393520421 0.203483440034517 -0.115977690115908 0.907670223169884 1 FALSE Alloprevotella rava (SP199) -0.194392098402577 0.279234417154799 -0.696160954596123 0.486328036946052 1 FALSE Granulicatella adiacens (SP2) -0.178779452368734 0.44873404097016 -0.39840849154705 0.69032909956243 1 FALSE Treponema maltophilum (SP203) 0.286027841985784 0.229848711944384 1.24441785888708 0.213345813451809 1 FALSE Neisseria mucosa (SP205) 0.0635659904957814 0.300285489686352 0.211685188525679 0.832352644090197 1 FALSE Actinomyces sp._HMT_414 (SP206) 0.0960830484364769 0.293528157806354 0.327338437152134 0.743411923672301 1 FALSE Peptostreptococcus stomatis (SP208) 0.0712712115345826 0.264504680735676 0.269451607950202 0.787582176708827 1 FALSE Prevotella marshii (SP209) 0.153711494575616 0.208803290282412 0.736154561394688 0.461636641336545 1 FALSE Tannerella sp._HMT_286 (SP212) -0.174900552762247 0.230788272311599 -0.757839863396981 0.448546854789296 1 FALSE Capnocytophaga sputigena (SP216) 0.350664862685203 0.254007583297764 1.38052910914132 0.167423793407892 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.788397031311551 0.50680767733173 1.55561382862696 0.119799948384836 1 FALSE Streptococcus constellatus (SP222) 0.0131758393434967 0.252234291240893 0.0522365110575439 0.958340241016301 1 FALSE Prevotella melaninogenica (SP223) 0.1338341266475 0.306041769215778 0.437306734275015 0.661888912147484 1 FALSE Lachnoanaerobaculum orale (SP224) 0.066658252776048 0.272193459836628 0.244892925847876 0.806539339301555 1 FALSE Capnocytophaga sp._HMT_336 (SP225) -0.209875032923913 0.226066427204155 -0.928377714106041 0.353211674590877 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) -0.250251544180713 0.240247197486553 -1.04164188718464 0.297577740957233 1 FALSE Kingella oralis (SP232) 0.311846447192123 0.352380782343942 0.884970074468319 0.376172771696152 1 FALSE Arachnia propionica (SP235) -0.13807857291013 0.328138712101248 -0.420793304227773 0.673906021447634 1 FALSE Scardovia wiggsiae (SP236) 0.104253874557107 0.405582208610788 0.257047455099672 0.797142139611774 1 FALSE Alloprevotella sp._HMT_473 (SP238) -0.176862346717473 0.235733180017587 -0.750264967809277 0.453095137159854 1 FALSE Porphyromonas catoniae (SP24) 0.0459061032373043 0.23339259645498 0.19669048605044 0.844069755693665 1 FALSE Dialister invisus (SP25) -0.824635004957068 0.374131892653482 -2.20412913507173 0.0275152636957734 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.503533654412864 0.426707959895945 -1.18004279680101 0.237983193929494 1 FALSE Actinomyces massiliensis (SP253) 0.343503826247162 0.312587376777973 1.09890498390519 0.271809512532692 1 FALSE Leptotrichia sp._HMT_221 (SP254) -0.270426980682274 0.217408240703586 -1.24386720488196 0.213548441091307 1 FALSE Selenomonas dianae (SP255) -0.032071269070729 0.23319253386074 -0.137531286013992 0.890610865033518 1 FALSE Cardiobacterium hominis (SP257) 0.115520321649145 0.253917800380785 0.454951647643082 0.649144025083145 1 FALSE Prevotella fusca (SP259) -0.0754654177324448 0.249258141493732 -0.30276009152681 0.762072699133 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.356961002047821 0.420078994518587 -0.849747325397454 0.395465580771828 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.091968659730096 0.303363044231071 -0.303163689444136 0.761765119256075 1 FALSE Prevotella saccharolytica (SP268) -0.252023082128051 0.195703751400248 -1.28777849338524 0.197823080798836 1 FALSE Peptidiphaga gingivicola (SP286) 0.592149519348974 0.327326568004804 1.80904814099992 0.0704435246557685 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) -0.6932992506982 0.374507155696775 -1.85123098491485 0.0641363299592964 1 FALSE Mogibacterium neglectum (SP298) 0.0982828262205601 0.244618730954021 0.401779642291716 0.687846205670554 1 FALSE Stomatobaculum longum (SP3) -0.307827105828502 0.303509082053152 -1.01422700021409 0.310474447814278 1 FALSE Tannerella sp._HMT_808 (SP30) 0.0297981031296895 0.278358048205628 0.10704954759446 0.914749672260933 1 FALSE Porphyromonas pasteri (SP31) 0.162904457609578 0.293936979227388 0.554215594233062 0.579431307256398 1 FALSE Bulleidia extructa (SP316) -0.0108538014748819 0.225195832044225 -0.0481971685548353 0.961559106732986 1 FALSE Neisseria sicca (SP318) 0.387915406150354 0.311171157910409 1.24663033924899 0.212533071936217 1 FALSE Prevotella oris (SP32) -0.101722173060387 0.396061210317626 -0.256834475102496 0.797306555244413 1 FALSE Megasphaera micronuciformis (SP320) 0.136218349880408 0.249089050807494 0.546866068335067 0.584470748859369 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.0810991947962691 0.215169001148569 0.376909286948226 0.706241019572744 1 FALSE Shuttleworthia satelles (SP326) 0.0774034751665872 0.245781716398396 0.314927718386999 0.752816535419811 1 FALSE Prevotella buccae (SP329) 0.0545575978736313 0.222728824710986 0.244950773409887 0.806494547433761 1 FALSE Actinomyces dentalis (SP346) -0.305181614241613 0.422369099530629 -0.722547209492257 0.469958111212883 1 FALSE Leptotrichia sp._HMT_498 (SP35) 0.00510323691024149 0.26759738696579 0.0190705782597716 0.984784802308022 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) 0.122015691787485 0.220502726348346 0.553352304563919 0.58002219176594 1 FALSE Gemella haemolysans (SP354) 0.449576370167717 0.338017219457001 1.33003984498165 0.183505143546542 1 FALSE Alloprevotella tannerae (SP36) 0.251142160128387 0.373586519324321 0.672246312802211 0.501426901799806 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) 0.263989976952732 0.494887296191221 0.533434539509229 0.593732813515836 1 FALSE Solobacterium moorei (SP371) -0.265507499515651 0.278658002641796 -0.952807732053366 0.340687495981392 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.362413223298004 0.237459786797953 1.52620882965068 0.126957865200009 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP386) -0.0570002686446374 0.220755135141672 -0.258205856040707 0.796248038667093 1 FALSE Streptococcus mutans (SP4) 0.316165859446817 0.494645853018839 0.639176205596887 0.522708309481154 1 FALSE Prevotella oralis (SP405) 0.403262661053114 0.254954610050567 1.58170374316091 0.11371721780916 1 FALSE Rothia mucilaginosa (SP41) 0.377741018991618 0.368390375517265 1.02538243150686 0.305182774479255 1 FALSE Lancefieldella rimae (SP42) 0.150893491211398 0.379464551479882 0.397648451279377 0.690889340373312 1 FALSE Fusobacterium nucleatum (SP43) -0.50115900524763 0.332600854923379 -1.50678808496473 0.131864984631598 1 FALSE Campylobacter concisus (SP44) 0.445092775636209 0.323372144816228 1.37641037662398 0.168694617195968 1 FALSE Campylobacter showae (SP46) -0.175513872618239 0.224012163608172 -0.783501528627867 0.433332656381059 1 FALSE Peptococcus sp._HMT_167 (SP47) 0.0848349753199559 0.272313711841393 0.311533983163387 0.75539471247721 1 FALSE Eikenella corrodens (SP48) 0.0243766452379352 0.251132413933222 0.0970669013057674 0.922673265638077 1 FALSE Actinomyces sp._HMT_170 (SP49) 0.105123988066831 0.327182064619408 0.321301194150465 0.747982151552622 1 FALSE Schaalia meyeri (SP51) 0.324566094338798 0.349280001851018 0.929243279371141 0.352763022850531 1 FALSE Veillonella parvula (SP52) 0.682937958741864 0.41221601892604 1.65674774241221 0.0975704862251408 1 FALSE Abiotrophia defectiva (SP56) 0.093983896075457 0.276554979313902 0.339838018135198 0.733978515669828 1 FALSE Streptococcus mitis (SP57) 0.113480051969474 0.459143926168453 0.247155729395056 0.804787705393439 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.0540169430059868 0.336397531920463 0.160574730431609 0.872428358790641 1 FALSE Prevotella denticola (SP59) -0.314927048770212 0.410265914201785 -0.76761689886652 0.442714819730223 1 FALSE Corynebacterium matruchotii (SP6) 0.262498401246736 0.444588696806012 0.590429768306216 0.554902558024126 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) -0.202603534523117 0.230659739095465 -0.878365402291833 0.379745453596377 1 FALSE Rothia aeria (SP61) 0.62137178224049 0.315878190242114 1.96712467474954 0.0491688392364409 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.16122441861806 0.266538762273455 -0.604881696166398 0.545257605849029 1 FALSE Haemophilus parainfluenzae (SP63) 0.353743841565443 0.440933223089881 0.802261710030715 0.422401586481237 1 FALSE Fretibacterium fastidiosum (SP65) 0.235151496946 0.301061320649205 0.781075086095158 0.43475833405399 1 FALSE Rothia dentocariosa (SP66) 0.178560501141905 0.503971828097102 0.354306513155932 0.723109187152781 1 FALSE Lachnoanaerobaculum saburreum (SP67) -0.222999629892584 0.329100697472313 -0.677603030334945 0.498023424217885 1 FALSE Aggregatibacter sp._HMT_458 (SP68) 0.332627272032162 0.275348660877632 1.20802211629417 0.227038755444208 1 FALSE Prevotella sp._HMT_300 (SP69) -0.0287814352454069 0.316775550831264 -0.0908575020069581 0.927605818950921 1 FALSE Streptococcus sanguinis (SP7) -0.343907510201167 0.490010628946377 -0.701836837581746 0.482780922730178 1 FALSE Bergeyella sp._HMT_322 (SP70) 0.0272871433599566 0.329070109127612 0.0829219749927963 0.933913580696312 1 FALSE Treponema socranskii (SP72) 0.249997483256972 0.367472809077706 0.680315596368674 0.496304651207315 1 FALSE Prevotella intermedia (SP73) 0.493795290130119 0.313465983762393 1.57527551858518 0.115192862307744 1 FALSE Gemella morbillorum (SP77) -0.36551370861843 0.349229363367215 -1.04662937014861 0.295270550569711 1 FALSE Anaeroglobus geminatus (SP79) -0.100562124243338 0.281304033773105 -0.357485539380675 0.720728349882375 1 FALSE Capnocytophaga granulosa (SP8) -0.19782195960908 0.222091684474466 -0.890722046064826 0.373078304552454 1 FALSE Veillonella atypica (SP80) -0.0661643910339682 0.274031249234081 -0.241448342913073 0.809207648563784 1 FALSE Capnocytophaga gingivalis (SP82) 0.0300647612228233 0.333179718017421 0.0902358685028099 0.92809978163584 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) -0.141162523293887 0.241231639232607 -0.585174165971534 0.558430613762356 1 FALSE Treponema denticola (SP84) 0.160673508152986 0.245112636556813 0.655508873022728 0.512140175476299 1 FALSE Leptotrichia wadei (SP85) -0.31501679470453 0.40721025031479 -0.773597409350596 0.43916890458153 1 FALSE Porphyromonas gingivalis (SP86) 0.537428295166208 0.303009522612841 1.7736350017385 0.0761235441431243 1 FALSE Streptococcus salivarius (SP87) 0.388791915119696 0.452550572432693 0.859112635809382 0.390278376654842 1 FALSE Streptococcus sp._HMT_064 (SP9) -0.352281724924412 0.389213153239825 -0.905112589315149 0.365405743283633 1 FALSE Capnocytophaga leadbetteri (SP92) -0.198687503513898 0.324721713012069 -0.611870089224718 0.540623712594304 1 FALSE Parvimonas micra (SP93) 0.345991508710726 0.394996859065349 0.875934835353929 0.381065460495292 1 FALSE Bifidobacterium dentium (SP95) 0.308105203317369 0.33038559637441 0.932562456409898 0.351045925319104 1 FALSE Corynebacterium durum (SP96) -0.187767510290126 0.326581232929643 -0.574948868328198 0.565325878359394 1 FALSE Lancefieldella parvula (SP97) -0.533465371597105 0.379113059971189 -1.40714058132855 0.159385706690337 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) -0.0644146391621322 0.354122979336948 -0.181899065919813 0.855661937557202 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.0284393777369489 0.33287284689267 -0.0854361597902237 0.931914646887252 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) 0.261352681190753 0.272520856401606 0.959019007358485 0.337549169903525 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.127518800750298 0.322142925893684 -0.395845416740217 0.692219069914322 1 FALSE Actinomyces viscosus_nov_95.841% (SPN468) 0.119538314976099 0.287874490793743 0.415244555523143 0.677962884872186 1 FALSE Actinomyces israelii_nov_97.037% (SPN575) -0.0482637224334886 0.305240623879806 -0.158116969556756 0.874364629046487 1 FALSE Veillonella dispar_parvula (SPP13) -0.00249446650707948 0.385745408310716 -0.00646661360922849 0.994840424800282 1 FALSE