CompareBaseline B P2...1 CompareBaseline B P2...2 CompareBaseline B P2...3 CompareBaseline B P2...4 CompareBaseline B P2...5 CompareBaseline B P2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) 0.0430960684873643 0.363322883549302 0.11861644404657 0.905579236866781 1 FALSE Leptotrichia buccalis (SP10) -0.135350535654311 0.323895076848706 -0.417883893053224 0.676032009460851 1 FALSE Capnocytophaga endodontalis (SP101) -0.989650349105898 0.355306929778876 -2.7853392831989 0.00534717402955912 0.823464800552105 FALSE Prevotella veroralis (SP102) -0.135800816953212 0.342752300593305 -0.396206872187701 0.691952422009463 1 FALSE Filifactor alocis (SP107) 0.412092630677125 0.363112855956086 1.13488857229269 0.256422008628954 1 FALSE Actinomyces israelii (SP109) 0.249338928908504 0.314727484476078 0.79223754265877 0.428222181846349 1 FALSE Prevotella pleuritidis (SP11) -0.217196164406616 0.419448212985033 -0.517814017756623 0.604588037041855 1 FALSE Prevotella oulorum (SP111) 0.417671597539134 0.368211327464223 1.13432576997435 0.25665792334789 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.646222936820301 0.362848603173298 1.7809712678201 0.0749171446754226 1 FALSE Treponema sp._HMT_231 (SP114) -0.5345172054797 0.28816121267173 -1.85492419511927 0.0636070523443249 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.266626524622822 0.273660306407426 -0.974297398563416 0.329908895956904 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) 0.702581875168012 0.481249010984338 1.45991339022383 0.144313878668201 1 FALSE Prevotella sp._HMT_317 (SP118) 0.208361143447581 0.475921953045544 0.437805279025743 0.661527443840953 1 FALSE Prevotella loescheii (SP119) 0.114822859384938 0.308648594986774 0.372018085453647 0.709879383979579 1 FALSE Streptococcus oralis (SP12) 0.495442680622151 0.452274306613693 1.09544732782119 0.273320709329419 1 FALSE Treponema sp._HMT_257 (SP120) 0.194051984520729 0.26135241040427 0.742491657989922 0.457789504196503 1 FALSE Schaalia sp._HMT_180 (SP121) -0.0355303271307329 0.377599496354285 -0.0940952715079799 0.92503347650752 1 FALSE Streptococcus cristatus (SP123) -0.711854414608776 0.441796238095975 -1.61127314636422 0.107120201045922 1 FALSE Prevotella salivae (SP124) 0.220219054787782 0.355374757862266 0.61968119545827 0.535467698362666 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.266177007265762 0.40337391071935 0.659876606275999 0.509333017726262 1 FALSE Selenomonas sp._HMT_134 (SP127) -0.411137170018758 0.292572278911392 -1.40524991481942 0.159946976060666 1 FALSE Prevotella maculosa (SP129) -0.0435763953114539 0.320759807765683 -0.135853664506766 0.89193696613808 1 FALSE Selenomonas sputigena (SP13) 0.598473243972962 0.437520876922521 1.36787357024553 0.171351653971767 1 FALSE Lautropia mirabilis (SP131) -0.0335794528522726 0.350593012285235 -0.0957790134874481 0.923696085529078 1 FALSE Porphyromonas endodontalis (SP132) 0.476629962428064 0.433292402445239 1.10001920120975 0.271323755930427 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) 0.0243386344576242 0.423657105742475 0.0574488994229657 0.954187611185342 1 FALSE Olsenella sp._HMT_807 (SP136) -0.086154859673709 0.471989880410203 -0.182535395883557 0.855162579038989 1 FALSE Actinomyces sp._HMT_525 (SP137) 0.202781491148094 0.308467840642498 0.657382924345459 0.510934728388559 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) -0.378543524870118 0.367361401980667 -1.03043902497421 0.302803961764599 1 FALSE Capnocytophaga sp._HMT_864 (SP140) -0.358664905667166 0.255924698254525 -1.40144701982011 0.161080440014538 1 FALSE Schaalia odontolytica (SP141) -0.0598210492498123 0.276063106770779 -0.216693385615931 0.828447303052897 1 FALSE Prevotella dentalis (SP143) 0.372459850571066 0.251004885548702 1.48387490449384 0.137842110668576 1 FALSE Streptococcus intermedius (SP147) 0.14094167796528 0.481477697349803 0.292727324112966 0.769730582670106 1 FALSE Campylobacter gracilis (SP151) 0.410096356828044 0.426627654353308 0.961251228426994 0.336425864049088 1 FALSE Actinomyces sp._HMT_448 (SP153) -0.0130787975876175 0.58015426363202 -0.0225436550370904 0.982014289153559 1 FALSE Streptococcus gordonii (SP155) -0.491809291918526 0.546079803175195 -0.900617984878562 0.367791468833231 1 FALSE Streptococcus chosunense (SP156) -0.00103361720262224 0.267983810614835 -0.0038570136018695 0.996922556026557 1 FALSE Selenomonas noxia (SP161) -0.258774980453276 0.413809603517425 -0.625347933575396 0.531742726491044 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP162) 0.0372599151338782 0.247887800118376 0.150309596180551 0.880520362346633 1 FALSE Selenomonas infelix (SP164) -0.333961574193566 0.294780090128785 -1.1329176744863 0.257248826964586 1 FALSE Mogibacterium timidum (SP165) 0.376374465857945 0.386635223680877 0.973461399286784 0.330324035973137 1 FALSE Leptotrichia hongkongensis (SP167) -0.278122289872596 0.400625091322611 -0.694220846114286 0.487543721409207 1 FALSE Prevotella sp._HMT_314 (SP17) -0.414200204736456 0.316283116628467 -1.30958683205026 0.19033564545995 1 FALSE Capnocytophaga ochracea (SP172) 0.0783242867614802 0.341977256119949 0.229033613668179 0.818842790489013 1 FALSE Actinomyces oris (SP173) -0.0950232723722492 0.431141432805061 -0.220399305522588 0.825560186228054 1 FALSE Mogibacterium vescum (SP174) 0.00916231373252718 0.26934587128948 0.0340169080322749 0.972863667843636 1 FALSE Selenomonas sp._HMT_137 (SP177) 0.12119228229458 0.26788178806224 0.452409561587747 0.650973960021859 1 FALSE Actinomyces naeslundii (SP179) -0.25745276309302 0.311380917277341 -0.826809700941666 0.408344930710727 1 FALSE Treponema sp._HMT_237 (SP18) -0.0358936219889181 0.365510764193336 -0.0982012720422436 0.921772472404509 1 FALSE Streptococcus anginosus (SP180) 0.25151922124696 0.512237002570955 0.49102118742802 0.62341146223325 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) 0.0778900031057955 0.371903637988105 0.209435980586689 0.834107907072491 1 FALSE Oribacterium sp._HMT_078 (SP186) -0.554804679850005 0.411207385358103 -1.34920893837267 0.177269864580403 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.411247741521186 0.355636013535128 -1.15637259970738 0.24752878421814 1 FALSE Catonella morbi (SP19) 0.0454548185485772 0.361147613809518 0.125862159434208 0.89984103680978 1 FALSE Actinomyces sp._HMT_175 (SP190) -0.111496061280345 0.436546418398655 -0.255404824278107 0.798410445090748 1 FALSE Leptotrichia sp._HMT_212 (SP192) 0.0507315443226886 0.285347035807769 0.177788930517804 0.858888741018925 1 FALSE Tannerella forsythia (SP193) 0.229973379072938 0.352747005477042 0.651949911699265 0.514433485100968 1 FALSE Lachnoanaerobaculum umeaense (SP198) -0.104683759028441 0.243917539735204 -0.429176840427652 0.667794535772465 1 FALSE Alloprevotella rava (SP199) 0.533834599506525 0.315007393680449 1.6946732369338 0.0901374253720354 1 FALSE Granulicatella adiacens (SP2) 0.160260329735059 0.501724903639808 0.31941872642246 0.749409012372213 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.319868082789786 0.250886512217956 -1.27495129157004 0.202326482802304 1 FALSE Peptostreptococcus stomatis (SP208) 0.510057027559924 0.377981702262858 1.34942253687513 0.177201285998754 1 FALSE Tannerella sp._HMT_286 (SP212) -0.0801985538440034 0.320813603637212 -0.249984891334892 0.802599032734388 1 FALSE Capnocytophaga sputigena (SP216) 0.43480492910483 0.33111877769841 1.31313884439637 0.189136166718983 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.538310904699336 0.538565007959139 0.999528184609011 0.317538892751952 1 FALSE Streptococcus constellatus (SP222) 0.341092856409313 0.343857716139861 0.991959291297615 0.321217384047188 1 FALSE Prevotella melaninogenica (SP223) 0.303964327222405 0.365955285592632 0.830605101741218 0.406196751727661 1 FALSE Lachnoanaerobaculum orale (SP224) 0.239113702812662 0.323058971195948 0.740154969006046 0.459205967849903 1 FALSE Capnocytophaga sp._HMT_336 (SP225) -0.453342350596516 0.291444401462766 -1.55550200422853 0.119826557616276 1 FALSE Kingella oralis (SP232) 0.11716887399311 0.402154471712944 0.29135290599664 0.77078142841826 1 FALSE Arachnia propionica (SP235) 0.0854741052357812 0.324485146855615 0.263414538582299 0.792231086020728 1 FALSE Scardovia wiggsiae (SP236) 0.362384467459761 0.455386411557736 0.795773563423107 0.42616366023097 1 FALSE Porphyromonas catoniae (SP24) -0.33231512197223 0.294861814368653 -1.12701986414813 0.259734082515523 1 FALSE Dialister invisus (SP25) -0.0992543186338516 0.449833569920253 -0.220646757536232 0.825367490940526 1 FALSE Treponema sp._HMT_238 (SP250) -0.110378993727619 0.244081101602304 -0.452222613725606 0.651108618730126 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.842344398380556 0.447177460582817 -1.88369153776827 0.0596067117430516 1 FALSE Cardiobacterium hominis (SP257) 0.0953076386981268 0.304079657375486 0.313429841117054 0.75395411560603 1 FALSE Prevotella fusca (SP259) 0.043521238002287 0.289687111901567 0.150235327062376 0.880578955213839 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.0433711414258781 0.436140979257059 -0.0994429404449871 0.920786590160261 1 FALSE Fretibacterium sp._HMT_360 (SP260) 0.216057295568536 0.301265884670398 0.71716482536652 0.473272400292172 1 FALSE Mycoplasma faucium (SP271) 0.337742641428703 0.293350099594843 1.15132956114613 0.24959668014558 1 FALSE Ruminococcaceae_[G-2] bacterium_HMT_085 (SP275) -0.389488711767129 0.257800217728696 -1.51081606989572 0.130835319237209 1 FALSE Treponema sp._HMT_234 (SP282) -0.056966325405963 0.209643195831558 -0.27172990365847 0.785829706333707 1 FALSE Peptidiphaga gingivicola (SP286) -0.103592407627493 0.325632921522639 -0.318126334226593 0.750389108657605 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.574696840590957 0.431460048135124 1.33198158919914 0.182866238444417 1 FALSE Phocaeicola abscessus (SP293) 0.228971047996678 0.254136299474069 0.900977343537818 0.367600366058478 1 FALSE Stomatobaculum longum (SP3) -0.494570817239543 0.382761866205298 -1.29211099878554 0.196318707450371 1 FALSE Tannerella sp._HMT_808 (SP30) -0.371810728921145 0.263536465820487 -1.41085116157857 0.158288505246826 1 FALSE Porphyromonas pasteri (SP31) -0.12885066512122 0.361095611450772 -0.356832542504567 0.721217172504119 1 FALSE Bulleidia extructa (SP316) -0.269846238812659 0.262757483846045 -1.0269783180401 0.3044306737577 1 FALSE Prevotella oris (SP32) 0.365068107123887 0.465245641838289 0.784678187809393 0.432642274654039 1 FALSE Megasphaera micronuciformis (SP320) -0.0302611189793839 0.289800755593208 -0.104420428157411 0.916835711973476 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.669283835857281 0.32578095739082 2.05439827182526 0.0399371601990919 1 FALSE Shuttleworthia satelles (SP326) 0.00905634246380815 0.276398972399649 0.0327654708162716 0.973861613716292 1 FALSE Actinomyces dentalis (SP346) -0.345573279231114 0.332028495600348 -1.04079403969914 0.297971146892831 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP351) 0.15219771559711 0.27829263229693 0.546898113474739 0.584448731875265 1 FALSE Gemella haemolysans (SP354) -0.216508708145948 0.360491441142289 -0.600593199827149 0.548110968315557 1 FALSE Alloprevotella tannerae (SP36) 0.627216168810514 0.456941943152733 1.37263864306908 0.169864712363264 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -0.482788583095348 0.520850843022428 -0.92692291768943 0.35396655725901 1 FALSE Solobacterium moorei (SP371) 0.0872739932212979 0.329190442830797 0.265117032167779 0.79091930689942 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.000201698405699932 0.290278964787878 0.000694843340947298 0.999445595270693 1 FALSE Streptococcus mutans (SP4) -0.687100382841878 0.521753639405236 -1.31690577879845 0.187870209218475 1 FALSE Prevotella oralis (SP405) 0.312886222554553 0.318223942313284 0.983226529971535 0.325495960344163 1 FALSE Rothia mucilaginosa (SP41) 0.42257451537347 0.314259156800149 1.34466890217682 0.178732181492314 1 FALSE Lancefieldella rimae (SP42) 0.00121400275104827 0.423339217569663 0.00286768317383329 0.997711923006366 1 FALSE Pseudoramibacter alactolyticus (SP423) 0.439891892047397 0.290965495147358 1.51183524982787 0.130575779538439 1 FALSE Fusobacterium nucleatum (SP43) 0.0214556746164716 0.298643461987579 0.0718437781081038 0.942726232920276 1 FALSE Campylobacter concisus (SP44) -0.186736709850327 0.332046827518613 -0.562380647470152 0.573856701569441 1 FALSE Capnocytophaga sp._HMT_380 (SP45) 0.229403994952668 0.317423732308751 0.722705871057972 0.469860607787971 1 FALSE Campylobacter showae (SP46) -0.737745363849832 0.286955176402897 -2.57094286674936 0.010142205744701 1 FALSE Peptococcus sp._HMT_167 (SP47) -0.0741192655806767 0.25820198522158 -0.287059239753986 0.774066961239904 1 FALSE Eikenella corrodens (SP48) -0.403168746859142 0.286847494609692 -1.40551601263844 0.159867891157837 1 FALSE Actinomyces sp._HMT_170 (SP49) -0.161147871644641 0.354550918469602 -0.454512633446914 0.649459901083055 1 FALSE Veillonella parvula (SP52) 0.01090507120722 0.48254068757583 0.0225992781292797 0.981969919651012 1 FALSE Streptococcus mitis (SP57) 0.284718985711491 0.458773426992929 0.62060914813159 0.534856819095358 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.168134127751466 0.397219954826382 0.423277143327189 0.672093068537097 1 FALSE Prevotella denticola (SP59) 0.21026368148288 0.456312631436451 0.46078865014317 0.644950245468713 1 FALSE Corynebacterium matruchotii (SP6) -0.585826697877199 0.469519322064443 -1.24771584543392 0.21213513640887 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) -0.40877503266784 0.289789355808429 -1.41059367597362 0.158364457401182 1 FALSE Rothia aeria (SP61) -0.19678839137263 0.266193181694983 -0.739269090664085 0.459743614370132 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.334181237801963 0.264152528642135 -1.26510709369245 0.205832940345965 1 FALSE Haemophilus parainfluenzae (SP63) -0.442994125856767 0.459544489672081 -0.963985285021862 0.335053303363356 1 FALSE Prevotella multiformis (SP64) -0.0505783042123754 0.302622998028644 -0.167133048518632 0.86726536276724 1 FALSE Fretibacterium fastidiosum (SP65) -0.385925245194135 0.350147868791874 -1.10217790708167 0.270384334803278 1 FALSE Rothia dentocariosa (SP66) 0.544762167869098 0.530384698312693 1.02710762509202 0.30436978857509 1 FALSE Lachnoanaerobaculum saburreum (SP67) -0.384133536555624 0.437441018026553 -0.878137899112849 0.379868888000929 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.20335025547444 0.316271968976157 -0.64296009580846 0.520249993030646 1 FALSE Prevotella sp._HMT_300 (SP69) 0.157233457842299 0.389092290636549 0.404103246520427 0.686136797721162 1 FALSE Streptococcus sanguinis (SP7) 0.49319992365641 0.568296120665548 0.867857276728916 0.385472469837309 1 FALSE Bergeyella sp._HMT_322 (SP70) -0.361617614699296 0.360657462625272 -1.00266222710889 0.316023860772326 1 FALSE Treponema socranskii (SP72) -0.132698228095021 0.415457960493646 -0.319402299903819 0.749421467023227 1 FALSE Prevotella intermedia (SP73) 0.905699159148809 0.427052111542786 2.12081648742315 0.0339372486699297 1 FALSE Leptotrichia hofstadii (SP74) -0.0529349933078538 0.288537580347732 -0.183459614668076 0.854437403757732 1 FALSE Gemella morbillorum (SP77) 0.761926221084141 0.431591880626802 1.76538590109155 0.0774989312901251 1 FALSE Anaeroglobus geminatus (SP79) 0.777667191952362 0.346416768690954 2.24488899567716 0.0247752595606127 1 FALSE Capnocytophaga granulosa (SP8) -0.183991371789402 0.343354036626082 -0.535864886277053 0.592051933855323 1 FALSE Veillonella atypica (SP80) 0.17898587896978 0.33365837735713 0.536434542382862 0.591658263760703 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP81) -0.349893465760498 0.26755834809651 -1.30772770967434 0.19096568125678 1 FALSE Capnocytophaga gingivalis (SP82) -0.0454561471846859 0.407935465833294 -0.111429750516622 0.911275569457619 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) -0.293166489623277 0.281359134913471 -1.0419654215721 0.297427710754246 1 FALSE Treponema denticola (SP84) 0.320174917008994 0.355684228489547 0.900166190580486 0.368031815583499 1 FALSE Leptotrichia wadei (SP85) 0.0580377815345827 0.493802880296055 0.117532286364524 0.906438260518626 1 FALSE Porphyromonas gingivalis (SP86) 0.795113872662847 0.361736047482438 2.19804987143685 0.0279455521993177 1 FALSE Streptococcus salivarius (SP87) 0.276454522264578 0.448645482151152 0.616198163723932 0.537763740231019 1 FALSE Streptococcus sp._HMT_064 (SP9) -0.142661751884127 0.429270230230326 -0.332335535607912 0.739635909745777 1 FALSE Treponema sp._HMT_262 (SP91) -0.0116061837502281 0.242670130849461 -0.0478269975361241 0.961854120249265 1 FALSE Capnocytophaga leadbetteri (SP92) -0.197387660526688 0.385505760339458 -0.512022596894215 0.60863519481208 1 FALSE Parvimonas micra (SP93) 0.552818609244846 0.431837158230595 1.28015525924161 0.200490537457176 1 FALSE Colibacter massiliensis (SP94) 0.10376140537435 0.261238021301907 0.397191055334304 0.691226577669732 1 FALSE Lancefieldella parvula (SP97) -0.0706349965068281 0.402999352526404 -0.175273225785642 0.8608649488214 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) 0.196920122411516 0.374233982347632 0.526195192580329 0.598752593875272 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.0391759326766468 0.342357538595962 -0.114429881805176 0.908897027312395 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) 0.128527573317141 0.312279048657037 0.411579239369008 0.680647850911181 1 FALSE Veillonella dispar_parvula (SPP13) 0.101885156475322 0.336141697950786 0.303101808244686 0.761812276155352 1 FALSE