CompareBaseline B P2...1 CompareBaseline B P2...2 CompareBaseline B P2...3 CompareBaseline B P2...4 CompareBaseline B P2...5 CompareBaseline B P2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) -0.0375732395168436 0.390532238789413 -0.0962103401074251 0.92335351869565 1 FALSE Leptotrichia buccalis (SP10) 0.312554534660245 0.307188939950621 1.01746675746362 0.308931438477042 1 FALSE Capnocytophaga endodontalis (SP101) -0.0142843038967756 0.325850421010579 -0.0438369969032873 0.965034336153605 1 FALSE Prevotella veroralis (SP102) 0.499130525052963 0.330250761348651 1.51136827971162 0.130694646390463 1 FALSE Selenomonas artemidis (SP103) 0.0544506914345892 0.28838445086571 0.188812854753895 0.850239496425664 1 FALSE Filifactor alocis (SP107) 0.607059013800926 0.368396246705113 1.64784255874044 0.0993849831880232 1 FALSE Actinomyces israelii (SP109) -0.813546184464655 0.415157353628176 -1.95960923576289 0.0500414810523286 1 FALSE Prevotella pleuritidis (SP11) 0.190528466519967 0.420561493784069 0.453033549994453 0.650524583093299 1 FALSE Prevotella oulorum (SP111) 0.662462585700951 0.37045760475662 1.7882277950163 0.073739263672565 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.728009674132613 0.359239018532188 2.02653285577714 0.0427102093293294 1 FALSE Treponema sp._HMT_231 (SP114) 0.0486149589661976 0.268746067483429 0.180895517547229 0.856449587289592 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.138927463761564 0.268557406049807 -0.517310119296426 0.604939691194647 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) 1.0793417642818 0.522258661087906 2.0666804491733 0.0387642746004087 1 FALSE Prevotella sp._HMT_317 (SP118) 1.06708526012974 0.451317817690985 2.36437653977218 0.0180604458850197 1 FALSE Streptococcus oralis (SP12) 0.82811575492514 0.486638155361276 1.70170740991395 0.0888102306678806 1 FALSE Treponema sp._HMT_257 (SP120) -0.0680960138996269 0.300019240964611 -0.226972155788033 0.820445393618431 1 FALSE Schaalia sp._HMT_180 (SP121) -0.697524914660416 0.4121770372987 -1.69229445490659 0.0905898445803155 1 FALSE Schaalia sp._HMT_178 (SP122) -0.917991085348602 0.2693839214102 -3.40774267648568 0.000655026339222632 0.100219029901063 FALSE Streptococcus cristatus (SP123) -0.00398361307005575 0.477411832573357 -0.00834418587529174 0.993342380174341 1 FALSE Prevotella salivae (SP124) 0.821584977749434 0.334170228702144 2.45858220506452 0.0139486838482579 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.1288038818483 0.421869365795615 0.305316982676343 0.760124742758568 1 FALSE Prevotella maculosa (SP129) 0.897689406732775 0.307218096707495 2.92199390710852 0.00347798344219262 0.521697516328893 FALSE Selenomonas sputigena (SP13) 1.01864139848783 0.449135574639819 2.26800426420178 0.0233289467751398 1 FALSE Lautropia mirabilis (SP131) -0.0336355442631487 0.367366696660924 -0.0915585015431979 0.927048823873223 1 FALSE Porphyromonas endodontalis (SP132) 0.945424564634992 0.442438437297151 2.13684997716422 0.0326101957201561 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) 0.481074963702592 0.427077031422755 1.12643604855065 0.259980995474716 1 FALSE Olsenella sp._HMT_807 (SP136) -0.401699686462104 0.499102269630704 -0.804844439516034 0.42090945360546 1 FALSE Actinomyces sp._HMT_525 (SP137) -1.14074414319204 0.407739798112645 -2.79772577627285 0.00514637851945507 0.766810399398805 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) 0.24693297410652 0.35978019784912 0.686343983306373 0.492496219389224 1 FALSE Capnocytophaga sp._HMT_864 (SP140) -0.0289220130118245 0.245903331953587 -0.117615376668761 0.906372420695934 1 FALSE Schaalia odontolytica (SP141) -0.249635129123697 0.324627768824942 -0.76898883304809 0.441899939779371 1 FALSE Prevotella dentalis (SP143) 0.328753212540798 0.269797590446073 1.21851797118444 0.223027199743682 1 FALSE Actinomyces viscosus (SP146) 0.00678823176502409 0.322793736897276 0.0210296266286738 0.983222022265989 1 FALSE Streptococcus intermedius (SP147) 0.335554355506503 0.48756064049218 0.688231017105419 0.491307314416083 1 FALSE Campylobacter gracilis (SP151) 1.41967568829897 0.43091520415539 3.29455928825159 0.000985761472928214 0.14884998241216 FALSE Actinomyces sp._HMT_448 (SP153) -0.53329780158433 0.626107236761102 -0.851767509257868 0.394343142849457 1 FALSE Streptococcus gordonii (SP155) -0.488992637976876 0.525264078609921 -0.930946276149255 0.351881355111412 1 FALSE Streptococcus chosunense (SP156) 0.0233025217577461 0.280588357019884 0.083048783653182 0.933812749812137 1 FALSE Selenomonas noxia (SP161) 0.592204965236733 0.382512749111545 1.54819667216906 0.121574952390622 1 FALSE Mogibacterium timidum (SP165) 0.787491642108677 0.377535490882533 2.0858744704182 0.0369899953897253 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) -0.384901658345084 0.26698267793435 -1.44167277563876 0.149394707259702 1 FALSE Leptotrichia hongkongensis (SP167) 0.0206394854634256 0.415941819698499 0.0496210875799562 0.960424341871852 1 FALSE Prevotella sp._HMT_314 (SP17) 0.171067189632152 0.296690886154541 0.576583904714373 0.5642205746298 1 FALSE Capnocytophaga ochracea (SP172) 0.587355011366576 0.315912546930074 1.85923293352633 0.0629941285747903 1 FALSE Actinomyces oris (SP173) -0.658715847032014 0.48537227121717 -1.35713530849249 0.174738221285111 1 FALSE Actinomyces naeslundii (SP179) -0.291236394751781 0.32295063058889 -0.901798501587441 0.367163915915743 1 FALSE Treponema sp._HMT_237 (SP18) 0.733139295473273 0.334835278406898 2.18955212533594 0.0285567342998574 1 FALSE Streptococcus anginosus (SP180) 0.413193633227091 0.518147529902353 0.797443989176131 0.4251932201615 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) -0.430728539433608 0.403630528682813 -1.06713568183067 0.28591057120432 1 FALSE Oribacterium sp._HMT_078 (SP186) 0.278071778113993 0.398530746243298 0.697742346695212 0.485338340173783 1 FALSE Selenomonas flueggei (SP188) -0.326526871126011 0.263145974561204 -1.24085831702535 0.214658093438005 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.470168687134467 0.386574905535116 -1.21624213160872 0.223892698522957 1 FALSE Catonella morbi (SP19) 0.5135955159933 0.358962947338819 1.43077584971054 0.152494466647717 1 FALSE Actinomyces sp._HMT_175 (SP190) -0.382670812959267 0.485457978770954 -0.788267635291698 0.430540174521158 1 FALSE Leptotrichia sp._HMT_212 (SP192) 0.0608383789222105 0.298205077464132 0.204015234883209 0.83834159357258 1 FALSE Tannerella forsythia (SP193) 0.356816018974222 0.363732832422722 0.980983807806325 0.326600726555257 1 FALSE Alloprevotella rava (SP199) 0.449256047257867 0.332009098425752 1.35314378246876 0.176009700843016 1 FALSE Granulicatella adiacens (SP2) 0.47840995828268 0.525074172567439 0.91112833819918 0.362227756723495 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.109002684922228 0.266576000526086 -0.408899093343406 0.682613714416734 1 FALSE Neisseria mucosa (SP205) -0.501895998611146 0.289959127603467 -1.73091981190367 0.0834660675138451 1 FALSE Peptostreptococcus stomatis (SP208) 0.916495594797863 0.372954719580248 2.45739106299381 0.0139950248737284 1 FALSE Tannerella sp._HMT_286 (SP212) 0.403168053681896 0.29311173944496 1.37547562729947 0.168984036784544 1 FALSE Capnocytophaga sputigena (SP216) 0.33650397587561 0.348673556277529 0.965097495399871 0.334495981322682 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.0695801835954492 0.565006378867743 0.123149377065239 0.901988811578599 1 FALSE Streptococcus constellatus (SP222) 0.428706162653772 0.335666071512441 1.27718050478594 0.201538528045152 1 FALSE Prevotella melaninogenica (SP223) 0.297583908861288 0.376028777299227 0.791385997100121 0.428718778780456 1 FALSE Lachnoanaerobaculum orale (SP224) 0.198968159543311 0.337259545603812 0.589955605814178 0.555220412930845 1 FALSE Kingella oralis (SP232) -0.128130963075698 0.42558205978575 -0.301072284720372 0.763359374665867 1 FALSE Arachnia propionica (SP235) -0.058620815599534 0.35669614801868 -0.16434384258185 0.869460469478145 1 FALSE Scardovia wiggsiae (SP236) 0.165243829300479 0.479615289321286 0.344534115111965 0.730444644505421 1 FALSE Porphyromonas catoniae (SP24) 0.0593940408556023 0.275912503127414 0.21526404270333 0.829561462209415 1 FALSE Dialister invisus (SP25) 1.23901771669561 0.444651386247304 2.78649241859443 0.00532818644350411 0.788571593638608 FALSE Treponema sp._HMT_238 (SP250) 0.0706097412739231 0.239929100477233 0.294294194132667 0.76853310873683 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.376431796259337 0.430587529271258 -0.874228282682558 0.381993946571321 1 FALSE Actinomyces massiliensis (SP253) -0.329417793262893 0.362523972234568 -0.908678648841864 0.363519777704188 1 FALSE Cardiobacterium hominis (SP257) 0.0959949404426626 0.313098939590334 0.306596185117282 0.759150757722996 1 FALSE Prevotella fusca (SP259) 0.118987865536516 0.294079357846134 0.404611416482932 0.685763165414681 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) 0.268788644645149 0.457272883106265 0.587807968885584 0.556661194577917 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.0337575007020421 0.328178253790762 -0.102863307705833 0.91807145938705 1 FALSE Mycoplasma faucium (SP271) 0.534977956905781 0.289804486602351 1.84599611682285 0.0648927692675651 1 FALSE Peptidiphaga gingivicola (SP286) -0.478119988018031 0.372905726942439 -1.28214707759592 0.199791057009681 1 FALSE Prevotella sp._HMT_304 (SP29) 0.523306384114867 0.265164452682634 1.97351635492859 0.0484367630858001 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.92775533604008 0.435382575752414 2.13089679676951 0.0330976453465641 1 FALSE Phocaeicola abscessus (SP293) 0.222456238152022 0.256170880039712 0.868390029801734 0.385180851073869 1 FALSE Stomatobaculum longum (SP3) 0.186122111576518 0.355027504366001 0.524247021111479 0.600106740084268 1 FALSE Tannerella sp._HMT_808 (SP30) -0.367071586832656 0.2788476533998 -1.31638757707731 0.188043989892116 1 FALSE Porphyromonas pasteri (SP31) 0.210506915810487 0.360847911299214 0.583367422171208 0.559645983810931 1 FALSE Bulleidia extructa (SP316) -0.0340074977267003 0.253465395051805 -0.134170180192644 0.893268005435867 1 FALSE Neisseria sicca (SP318) -0.607312253972374 0.318288400742161 -1.90805650647742 0.0563839133295629 1 FALSE Prevotella oris (SP32) 1.13062579436604 0.475378678032453 2.37836875445401 0.017389426110648 1 FALSE Megasphaera micronuciformis (SP320) 0.0703656068840332 0.306069716327239 0.22990058516211 0.818169021611706 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.665731518778168 0.330089548518211 2.0168209559093 0.0437142012241021 1 FALSE Shuttleworthia satelles (SP326) -0.0670082457704509 0.28655841973706 -0.233837993076373 0.815110752917851 1 FALSE Actinomyces dentalis (SP346) -1.03488088112927 0.392293159240281 -2.63802938377368 0.00833893559453641 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP351) 0.229270890795693 0.272943933978822 0.839992622123933 0.400912523217502 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) 0.0147579285553893 0.269817053871565 0.0546960555073518 0.956380611909551 1 FALSE Gemella haemolysans (SP354) -0.331296547192935 0.38059622006498 -0.870467255655804 0.384045106099641 1 FALSE Alloprevotella tannerae (SP36) 1.11105922576828 0.459846154133345 2.41615421980044 0.0156854162902868 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -0.409010352242976 0.53894188813926 -0.758913644020354 0.447904216538747 1 FALSE Solobacterium moorei (SP371) 0.244283223127568 0.329101912370936 0.742272268695397 0.457922390102317 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) -0.109014003185897 0.298094362994746 -0.365703001193008 0.714586706409682 1 FALSE Streptococcus mutans (SP4) -0.537178005631881 0.55380082797659 -0.969984114315172 0.332054410491942 1 FALSE Prevotella oralis (SP405) 0.189228057226896 0.336958816570736 0.561576216205555 0.574404788701328 1 FALSE Rothia mucilaginosa (SP41) -0.332760028813488 0.403466018532137 -0.824753544360722 0.409511525944675 1 FALSE Lancefieldella rimae (SP42) 0.119647090661361 0.444369851330315 0.269251143620956 0.787736425971995 1 FALSE Pseudoramibacter alactolyticus (SP423) 0.35189944310571 0.301191382105468 1.16835827322073 0.242662278793503 1 FALSE Fusobacterium nucleatum (SP43) 0.925753674601338 0.359726344064647 2.57349424048568 0.0100677322534378 1 FALSE Campylobacter concisus (SP44) -0.588351442819528 0.360339977619825 -1.63276760659697 0.102517882398528 1 FALSE Capnocytophaga sp._HMT_380 (SP45) 0.727696625640448 0.285733328829321 2.54676844532592 0.010872555094116 1 FALSE Peptococcus sp._HMT_167 (SP47) -0.195612684286272 0.293913093125484 -0.66554600275244 0.505701330175564 1 FALSE Eikenella corrodens (SP48) -0.173841483156003 0.281499311106028 -0.617555625528777 0.536868303145073 1 FALSE Actinomyces sp._HMT_170 (SP49) -0.0824686474733674 0.372922777753776 -0.221141352561247 0.82498237253173 1 FALSE Schaalia meyeri (SP51) -0.689053421991267 0.363626326792269 -1.894949213578 0.058099130312362 1 FALSE Veillonella parvula (SP52) 0.0451959180091078 0.463247677684792 0.0975631831226589 0.922279160597956 1 FALSE Bacteroidetes_[G-3] bacterium_HMT_280 (SP53) 0.0263041843237341 0.242687074437487 0.108387248825276 0.913688515509109 1 FALSE Abiotrophia defectiva (SP56) -0.165605714616176 0.308565197457434 -0.536696023987023 0.591477602926829 1 FALSE Streptococcus mitis (SP57) 0.627606491301301 0.48809167824482 1.28583731146201 0.198499845578061 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.329752446743259 0.409275467541295 0.805698051545167 0.420416973266279 1 FALSE Prevotella denticola (SP59) 0.650683506911424 0.468526192525555 1.38878789978414 0.164897255795543 1 FALSE Corynebacterium matruchotii (SP6) -1.64601667073311 0.488644390850347 -3.36853691877785 0.000755682757509476 0.11486377914144 FALSE Rothia aeria (SP61) -0.675162051359142 0.343650248807511 -1.96467790639465 0.0494515286492806 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.111920154925073 0.271632561743764 -0.412027756196067 0.680319079148581 1 FALSE Haemophilus parainfluenzae (SP63) -0.545686962954168 0.480396661643869 -1.13590914867494 0.255994589028738 1 FALSE Prevotella multiformis (SP64) 0.200297157698667 0.298143946832797 0.671813598184492 0.501702370756335 1 FALSE Fretibacterium fastidiosum (SP65) -0.226809375661398 0.357773940156586 -0.633946048619781 0.526116032144491 1 FALSE Rothia dentocariosa (SP66) -0.611155491161124 0.551467056445452 -1.10823572145977 0.267760027422721 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.575573157368629 0.413525112803112 1.39186989991263 0.16396179816936 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.271699426682152 0.323433050365012 -0.84004843158584 0.400881232082591 1 FALSE Prevotella sp._HMT_300 (SP69) 0.704823981666394 0.391021788829312 1.80251843196918 0.0714638774135079 1 FALSE Streptococcus sanguinis (SP7) -0.229324832833346 0.589721673312504 -0.388869602748724 0.697372609343259 1 FALSE Bergeyella sp._HMT_322 (SP70) -0.10497507076224 0.366791889958402 -0.286197905777429 0.774726547640375 1 FALSE Treponema socranskii (SP72) 0.116272257698168 0.432572346523384 0.268792627713391 0.788089266868649 1 FALSE Prevotella intermedia (SP73) 0.839083874796124 0.441210379580456 1.9017772782091 0.0572002779935533 1 FALSE Gemella morbillorum (SP77) 1.16054769758294 0.435968936242341 2.66199630548409 0.00776787310614492 1 FALSE Anaeroglobus geminatus (SP79) 0.735407334408414 0.363868416734072 2.02108042519633 0.0432714403315654 1 FALSE Capnocytophaga granulosa (SP8) 0.425829406397969 0.306448288402347 1.38956366380119 0.164661416088571 1 FALSE Veillonella atypica (SP80) 0.307446884092976 0.330615525950537 0.929922704655357 0.352411106451104 1 FALSE Capnocytophaga gingivalis (SP82) 0.561264130499387 0.404050120707568 1.38909531697827 0.164803767614825 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) 0.0323153332402107 0.270284088463638 0.119560620175235 0.90483121643171 1 FALSE Treponema denticola (SP84) 0.801404499109863 0.343887297935401 2.33042774165042 0.0197835549639388 1 FALSE Leptotrichia wadei (SP85) 0.669910183730189 0.495914977306109 1.35085692988998 0.176741267308053 1 FALSE Porphyromonas gingivalis (SP86) 0.365338643952072 0.41298052312116 0.884638919993061 0.376351408391129 1 FALSE Streptococcus salivarius (SP87) -0.353304833577281 0.501054186020651 -0.705123005524037 0.48073369091453 1 FALSE Streptococcus sp._HMT_064 (SP9) 0.15278757108648 0.432005069544954 0.35367078272349 0.723585621187459 1 FALSE Capnocytophaga leadbetteri (SP92) 0.408791370963576 0.379811157160607 1.07630163900297 0.281792375887292 1 FALSE Parvimonas micra (SP93) 0.515928039148704 0.446442866753146 1.15564180227787 0.24782770202364 1 FALSE Bifidobacterium dentium (SP95) -0.661600478750342 0.335355732863267 -1.97283187349027 0.0485147204596784 1 FALSE Lancefieldella parvula (SP97) 0.127217796583714 0.416940194431985 0.305122409119198 0.760272924483534 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) 0.103266185913181 0.38330475869373 0.269410132723381 0.787614089549421 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) 0.214705596884743 0.354736929121444 0.605253017825045 0.545010893252614 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.205297596476264 0.358724958528169 -0.572298056200467 0.56712006639011 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) 0.390169270236343 0.295837764732991 1.31886228449735 0.187215156997662 1 FALSE Veillonella dispar_parvula (SPP13) 0.886138791980363 0.375482336848867 2.36000127041139 0.0182748724775492 1 FALSE