CompareBaseline A P2...1 CompareBaseline A P2...2 CompareBaseline A P2...3 CompareBaseline A P2...4 CompareBaseline A P2...5 CompareBaseline A P2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) -0.480074888790747 0.321084537646845 -1.49516663838473 0.134870957940855 1 FALSE Leptotrichia buccalis (SP10) 0.137579942988392 0.26821231668992 0.512951622379999 0.60798516171897 1 FALSE Capnocytophaga endodontalis (SP101) 0.903280945319814 0.30957344931304 2.91782433966557 0.00352482857119781 0.553398085678057 FALSE Prevotella veroralis (SP102) 0.555652832885359 0.271316875381972 2.04798478569785 0.0405614901900472 1 FALSE Filifactor alocis (SP107) 0.184287882540313 0.272620197296686 0.675987635427309 0.499048495423182 1 FALSE Actinomyces israelii (SP109) -0.528542609684437 0.28496820361499 -1.85474239925564 0.0636330209880513 1 FALSE Prevotella pleuritidis (SP11) 0.510747136690826 0.346036357193225 1.47599269866787 0.139945852306685 1 FALSE Prevotella oulorum (SP111) -0.318691211982379 0.304865996394375 -1.04534849983768 0.295861929679815 1 FALSE Parvimonas sp._HMT_110 (SP112) -0.388906290870515 0.265036323076177 -1.46736977919338 0.142275490883307 1 FALSE Treponema sp._HMT_231 (SP114) 0.0652662964641435 0.279245484476173 0.233723730883506 0.815199463363496 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) 0.0727613348209507 0.253966050562119 0.286500241508278 0.774495008521487 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) 0.405050944183358 0.411793385762251 0.983626639445867 0.325299121977362 1 FALSE Prevotella sp._HMT_317 (SP118) 0.324477991016844 0.384256599178245 0.844430496992788 0.398428886555556 1 FALSE Prevotella loescheii (SP119) -0.16317986088023 0.246298732583053 -0.662528219974519 0.507632755373316 1 FALSE Streptococcus oralis (SP12) 0.329379730831713 0.409577063346363 0.804194766524729 0.421284500807938 1 FALSE Schaalia sp._HMT_180 (SP121) -0.944142493502286 0.351588251245229 -2.68536417288801 0.00724508162186794 1 FALSE Schaalia sp._HMT_178 (SP122) -0.308320625995885 0.236530959379061 -1.30351065587899 0.19240048083933 1 FALSE Streptococcus cristatus (SP123) 0.917130327644534 0.376989035138618 2.43277719551527 0.0149835177095055 1 FALSE Prevotella salivae (SP124) 0.296372381489658 0.277213029379147 1.06911418324536 0.285018221402303 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.0267749467762223 0.32768754443563 0.0817087717579752 0.934878302832655 1 FALSE Selenomonas sp._HMT_134 (SP127) 0.201022217300711 0.262388494757476 0.766124358792919 0.443602310413281 1 FALSE Prevotella maculosa (SP129) 0.422553405497007 0.280083519963969 1.50866929104349 0.131383316998565 1 FALSE Selenomonas sputigena (SP13) -0.165312123253399 0.371749252428504 -0.444687170649234 0.656545841959901 1 FALSE Lautropia mirabilis (SP131) -0.156785649759927 0.316675309385088 -0.495099065551936 0.620530193400021 1 FALSE Porphyromonas endodontalis (SP132) 0.516656753577932 0.3536795565375 1.46080468612879 0.144069049449411 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.145565199021582 0.363408713278394 -0.400555060192159 0.688747737991702 1 FALSE Olsenella sp._HMT_807 (SP136) -0.934058115182554 0.412327924967811 -2.26532829484074 0.0234925409540363 1 FALSE Actinomyces sp._HMT_525 (SP137) -1.44253442462527 0.318411230243866 -4.53041315006526 5.88684513758409e-06 0.000947782067151038 TRUE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) 0.258849985008317 0.324177164665285 0.798483092649607 0.424590200802719 1 FALSE Capnocytophaga sp._HMT_864 (SP140) 0.0759192097166144 0.242021925350904 0.313687322363626 0.753758530415563 1 FALSE Schaalia odontolytica (SP141) -0.550916388256221 0.285083898932441 -1.93247107367076 0.0533013890024564 1 FALSE Streptococcus intermedius (SP147) -0.234964645112139 0.40196892846073 -0.584534347000141 0.558860863861107 1 FALSE Campylobacter gracilis (SP151) 0.104457909074434 0.365723511797818 0.285619889629029 0.775169268072617 1 FALSE Actinomyces sp._HMT_448 (SP153) -1.29355744302421 0.524828570852262 -2.46472374955429 0.0137118922448103 1 FALSE Streptococcus gordonii (SP155) -0.456552175559116 0.470742171884879 -0.969856118331302 0.332118215712804 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP157) -0.0669852948855781 0.2212940254692 -0.302698162517276 0.762119898236866 1 FALSE Selenomonas noxia (SP161) 0.369090435175896 0.336711770995799 1.09616136698856 0.273008162946086 1 FALSE Selenomonas infelix (SP164) 0.037308109908444 0.260012998149834 0.143485557160281 0.885906716939017 1 FALSE Mogibacterium timidum (SP165) 0.352469621703408 0.299825254142509 1.17558350016732 0.239761352130328 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) -0.191129905599338 0.206251512558819 -0.926683655446315 0.354090806142997 1 FALSE Leptotrichia hongkongensis (SP167) -0.368322305606472 0.373038194967381 -0.98735815950074 0.323467088265071 1 FALSE Prevotella sp._HMT_314 (SP17) 0.280923357455071 0.286818584039808 0.979446148496715 0.327359584464573 1 FALSE Capnocytophaga ochracea (SP172) 0.255180233783193 0.275956415723357 0.924712089459114 0.355115689177071 1 FALSE Actinomyces oris (SP173) -0.366222613462541 0.394644107516028 -0.927981962704633 0.353416926075212 1 FALSE Mogibacterium vescum (SP174) -0.0817867449896503 0.226815891831307 -0.360586484171394 0.718408594582963 1 FALSE Actinomyces naeslundii (SP179) -0.386084076812207 0.326472891696482 -1.18259153097202 0.236971070564142 1 FALSE Treponema sp._HMT_237 (SP18) 0.00798050464650847 0.315137055970054 0.0253239169920621 0.979796597045708 1 FALSE Streptococcus anginosus (SP180) 0.0334313309545447 0.415634209828334 0.0804345026564405 0.935891686640114 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) -0.503336925892194 0.325323959607127 -1.54718676884433 0.121818215536667 1 FALSE Oribacterium sp._HMT_078 (SP186) 0.320268871303844 0.356169372028596 0.899203852031751 0.368544088939875 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.436783217408392 0.358607368643065 -1.21799844509927 0.223224563626005 1 FALSE Catonella morbi (SP19) 0.108301295510728 0.296976953610916 0.364679124739823 0.715350943065709 1 FALSE Actinomyces sp._HMT_175 (SP190) 0.227365546417793 0.361628143066061 0.628727467088365 0.529527492791085 1 FALSE Leptotrichia sp._HMT_212 (SP192) -0.149541437691912 0.232630289067527 -0.642828748961852 0.520335226444306 1 FALSE Tannerella forsythia (SP193) 0.40052702327295 0.26952553581439 1.48604480856602 0.137267269234916 1 FALSE Bergeyella sp._HMT_900 (SP196) -0.00699716902397221 0.211894401532149 -0.0330219627011269 0.973657073487808 1 FALSE Alloprevotella rava (SP199) -0.45090063858836 0.263809977789925 -1.70918720499426 0.0874162781735133 1 FALSE Granulicatella adiacens (SP2) -0.0325598117582356 0.420611794618985 -0.0774106008789653 0.93829690780778 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) 0.383191245558389 0.207061081735297 1.85061935515363 0.0642243332164369 1 FALSE Neisseria mucosa (SP205) -0.32761284687267 0.279028141372198 -1.17412116663769 0.240346496396299 1 FALSE Peptostreptococcus stomatis (SP208) 0.305779790835399 0.277535528300479 1.10176809689151 0.27056250344051 1 FALSE Tannerella sp._HMT_286 (SP212) 0.136536066826529 0.269668831981415 0.506310150206526 0.612638938581726 1 FALSE Capnocytophaga sputigena (SP216) 0.0804339215188582 0.229785646873587 0.350038928075903 0.726309483078379 1 FALSE Ruminococcaceae_[G-1] bacterium_HMT_075 (SP218) 0.0652917777032052 0.214184814802447 0.30483850016831 0.760489157303357 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.147736322270542 0.477515439938833 0.309385435347319 0.757028348203013 1 FALSE Streptococcus constellatus (SP222) -0.0711408423491671 0.266880157017545 -0.2665647500518 0.78980429918906 1 FALSE Prevotella melaninogenica (SP223) -0.0444762796507412 0.297422617739146 -0.149538996021308 0.88112834090453 1 FALSE Lachnoanaerobaculum orale (SP224) -0.145417278430426 0.256419434492983 -0.567107086551217 0.570641428539846 1 FALSE Capnocytophaga sp._HMT_336 (SP225) 0.130668226052579 0.263634771143313 0.49564109273563 0.620147655002057 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) -0.404355412704887 0.2419714028933 -1.67108760733677 0.0947043748143974 1 FALSE Kingella oralis (SP232) -0.105383377813808 0.322574369151145 -0.326694827276963 0.743898713006923 1 FALSE Arachnia propionica (SP235) -0.454103481682569 0.294865695958456 -1.54003496475408 0.12355183081686 1 FALSE Scardovia wiggsiae (SP236) -0.264816751539298 0.376966013955485 -0.702495030680854 0.48237049966637 1 FALSE Alloprevotella sp._HMT_473 (SP238) -0.267223714853923 0.228642747520555 -1.1687390820472 0.242508770725649 1 FALSE Porphyromonas catoniae (SP24) 0.265685278128014 0.259493215054852 1.02386213863762 0.305900395433688 1 FALSE Dialister invisus (SP25) 0.341707042435275 0.38363945153845 0.890698391588717 0.373090997907884 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.209551040228768 0.444681975827643 -0.471237989438971 0.637470792701374 1 FALSE Selenomonas dianae (SP255) -0.208525017606604 0.224201741249088 -0.930077600846696 0.352330907241106 1 FALSE Cardiobacterium hominis (SP257) -0.0557223645434421 0.244869563936829 -0.227559373437759 0.819988806599368 1 FALSE Prevotella fusca (SP259) -0.17192877813534 0.245927628711348 -0.699103142807664 0.484487574593406 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.216731203913916 0.400712274369765 -0.540864899271648 0.588600706095797 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.513713443937798 0.273795338832724 -1.87626804067564 0.060618483202811 1 FALSE Prevotella saccharolytica (SP268) -0.228551485673116 0.214962153774101 -1.06321732295861 0.287683408320619 1 FALSE Mycoplasma faucium (SP271) 0.240874458194678 0.197910592589996 1.21708724653101 0.22357102253201 1 FALSE Ruminococcaceae_[G-2] bacterium_HMT_085 (SP275) 0.245803088699802 0.220950177672048 1.11248196896516 0.265930978545058 1 FALSE Peptidiphaga gingivicola (SP286) 0.045691951021313 0.27378613313384 0.166889208369719 0.867457224538163 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) -0.5121707431862 0.373021769578969 -1.37303177711127 0.169742468121634 1 FALSE Mogibacterium neglectum (SP298) -0.101345314814913 0.229954405689033 -0.440719170007822 0.659416316676137 1 FALSE Stomatobaculum longum (SP3) 0.200935835050436 0.336027281102822 0.597974766783746 0.549856770023742 1 FALSE Tannerella sp._HMT_808 (SP30) -0.137392742718944 0.266088054803723 -0.516343143702147 0.605614768352202 1 FALSE Porphyromonas pasteri (SP31) 0.330332050604162 0.294996736751755 1.11978204993549 0.262806650290027 1 FALSE Bulleidia extructa (SP316) 0.0530549516739541 0.239493878757707 0.221529468515683 0.824680193970192 1 FALSE Neisseria sicca (SP318) -0.0853858343788969 0.270187136878195 -0.316024794390527 0.751983688622073 1 FALSE Prevotella oris (SP32) 0.491905526244643 0.38608317807041 1.2740920977265 0.202630778661719 1 FALSE Megasphaera micronuciformis (SP320) 0.0649150878067019 0.236343373968749 0.274664301844508 0.783574159658087 1 FALSE Shuttleworthia satelles (SP326) -0.170591101004794 0.237203695984715 -0.7191755604676 0.47203275568685 1 FALSE Actinomyces dentalis (SP346) -1.16641920407689 0.370066603064746 -3.15191696418176 0.00162202392543919 0.257901804144831 FALSE Leptotrichia sp._HMT_498 (SP35) -0.128162005505939 0.257563003300465 -0.497594778223755 0.618769684972232 1 FALSE Gemella haemolysans (SP354) 0.162858543183608 0.31482270760735 0.517302403061492 0.60494507681393 1 FALSE Alloprevotella tannerae (SP36) 0.563055229149035 0.374360105301786 1.50404709576394 0.132569240781646 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) 0.165838219867982 0.47467825672314 0.349369741544131 0.726811746593825 1 FALSE Solobacterium moorei (SP371) -0.280428257546503 0.281324598244246 -0.996813855939592 0.318854871401385 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.0812675337692841 0.229025135439585 0.354841112148243 0.722708626875042 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP386) -0.028253791452496 0.241202489706152 -0.117137229747987 0.906751307727378 1 FALSE Streptococcus mutans (SP4) 0.294158248719693 0.459779998447498 0.63978043784626 0.522315352155739 1 FALSE Prevotella oralis (SP405) 0.107674507788335 0.231698413819569 0.46471836389948 0.642133155784263 1 FALSE Rothia mucilaginosa (SP41) -0.549523513132465 0.270295363663524 -2.03304823909794 0.0420476496358282 1 FALSE Lancefieldella rimae (SP42) 0.0973965911845884 0.359351335687697 0.27103444877476 0.786364537235921 1 FALSE Fusobacterium nucleatum (SP43) 0.231209006800113 0.268403293063791 0.861423882549613 0.389004627115437 1 FALSE Campylobacter concisus (SP44) -0.128451945270114 0.292030075308715 -0.439858617761624 0.660039509386476 1 FALSE Capnocytophaga sp._HMT_380 (SP45) 0.153823743292285 0.224796884392365 0.68427880443306 0.493799128502675 1 FALSE Campylobacter showae (SP46) 0.372903561574108 0.2704035624117 1.37906305023581 0.167875314993463 1 FALSE Peptococcus sp._HMT_167 (SP47) -0.208588431322762 0.236172844397703 -0.883202435295695 0.377126906056407 1 FALSE Eikenella corrodens (SP48) 0.0817739210039513 0.257185330989427 0.317957173876736 0.750517422665754 1 FALSE Actinomyces sp._HMT_170 (SP49) 0.0118732243009815 0.306378255465755 0.038753482302234 0.969086932694932 1 FALSE Schaalia meyeri (SP51) -0.50935283560741 0.272109983256785 -1.87186383061419 0.0612254446690196 1 FALSE Veillonella parvula (SP52) 0.545298817606628 0.433350820807241 1.25833110594057 0.208272036119793 1 FALSE Streptococcus mitis (SP57) 0.284437569622158 0.426233910358941 0.667327405702251 0.504563024552296 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.043705274060656 0.323168950381883 0.135239706689056 0.892422354057423 1 FALSE Prevotella denticola (SP59) -0.0464372112787928 0.398438234684446 -0.1165480800696 0.907218183310257 1 FALSE Corynebacterium matruchotii (SP6) -0.969621559546296 0.424586893760321 -2.28368226574051 0.0223902110464022 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) -0.00168545661675931 0.268893058090545 -0.00626812989791563 0.99499878867851 1 FALSE Rothia aeria (SP61) -0.0289318656831451 0.232109859413374 -0.124647293123465 0.900802785837811 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.110893323678292 0.260836991652821 -0.425144159866301 0.670731587761568 1 FALSE Haemophilus parainfluenzae (SP63) 0.0791210165309178 0.418767721039205 0.188937715482399 0.850141633218897 1 FALSE Prevotella multiformis (SP64) 0.138293356608605 0.249847111036788 0.553511929894768 0.579912913833103 1 FALSE Fretibacterium fastidiosum (SP65) 0.222337378541615 0.296749444062394 0.749242780366816 0.453710888586473 1 FALSE Rothia dentocariosa (SP66) -1.14928714582544 0.478636623835191 -2.40116842003544 0.0163428127322944 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.564777076094546 0.359242233379083 1.57213440853591 0.115919383122631 1 FALSE Aggregatibacter sp._HMT_458 (SP68) 0.0923481128873274 0.266830953390968 0.346092204497791 0.729273421757175 1 FALSE Prevotella sp._HMT_300 (SP69) 0.346879100641567 0.318868200411757 1.08784475903724 0.276663646306324 1 FALSE Streptococcus sanguinis (SP7) -1.23836225462805 0.462134553746874 -2.67965735214498 0.00736975563296834 1 FALSE Bergeyella sp._HMT_322 (SP70) 0.111999699359889 0.321954877913044 0.347873901106536 0.727934886435177 1 FALSE Treponema socranskii (SP72) 0.327037981113037 0.351662121493399 0.92997784272076 0.352382556785843 1 FALSE Prevotella intermedia (SP73) 0.25525001784031 0.301472657850944 0.846677173511741 0.397175085270496 1 FALSE Leptotrichia hofstadii (SP74) 0.0620112689985695 0.244340839294716 0.253790030260859 0.799657776037462 1 FALSE Gemella morbillorum (SP77) -0.138822220056756 0.347975695850473 -0.398942287384371 0.689935729405774 1 FALSE Anaeroglobus geminatus (SP79) -0.31475196972441 0.261928067991278 -1.20167331488465 0.229490123938467 1 FALSE Capnocytophaga granulosa (SP8) 0.240068830641169 0.271058919219256 0.885670286492142 0.375795224375969 1 FALSE Veillonella atypica (SP80) -0.109633373847896 0.280204081037974 -0.391262587760233 0.695603149704464 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP81) 0.209495703360851 0.24240061015254 0.864254026543159 0.387448359153746 1 FALSE Capnocytophaga gingivalis (SP82) 0.464855050969772 0.340176030281694 1.36651324487746 0.171777926550945 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) 0.0123893116324778 0.254408908516447 0.0486984190322757 0.961159635812147 1 FALSE Treponema denticola (SP84) 0.469973102316732 0.262929146541419 1.78745151877902 0.0738645412401004 1 FALSE Leptotrichia wadei (SP85) 0.124925619553952 0.407513306330658 0.306555927409613 0.759181404137958 1 FALSE Streptococcus salivarius (SP87) -0.412897428659287 0.394115793168982 -1.04765512018508 0.294797532032876 1 FALSE Streptococcus sp._HMT_064 (SP9) -0.228762389890929 0.38618533266129 -0.592364262812562 0.553606691779522 1 FALSE Treponema sp._HMT_262 (SP91) -0.172360308393673 0.216419072304899 -0.796419218315682 0.425788411515179 1 FALSE Capnocytophaga leadbetteri (SP92) 0.235561540039241 0.33482955398108 0.703526726474546 0.481727556966678 1 FALSE Parvimonas micra (SP93) 0.137170950677461 0.381395914788897 0.35965500771917 0.71910514212569 1 FALSE Colibacter massiliensis (SP94) -0.163642051159241 0.217121008896859 -0.753690543308857 0.451035061625808 1 FALSE Bifidobacterium dentium (SP95) -0.531094692922897 0.238228791820233 -2.22934721225325 0.0257908116020697 1 FALSE Corynebacterium durum (SP96) -0.398829906239509 0.301797957421271 -1.32151294080097 0.186330390515169 1 FALSE Lancefieldella parvula (SP97) -0.507542566443687 0.364360149902611 -1.39296947423956 0.163629021763512 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) -0.814895692771729 0.276211632743216 -2.95025841119917 0.00317508247553625 0.501663031134728 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.294023302172407 0.321298497531225 -0.915109483647156 0.360134156783163 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.465570452487039 0.303273491044029 -1.53515050354153 0.12474686319605 1 FALSE Fusobacterium nucleatum_nov_97.018% (SPN283) 0.0190148555765239 0.224311181412703 0.0847699854138747 0.93244425579547 1 FALSE Actinomyces israelii_nov_97.037% (SPN575) -0.883587157556112 0.230886305327862 -3.82693618966012 0.000129748132003595 0.0207597011205752 TRUE Prevotella veroralis_nov_96.402% (SPN608) 0.131881675518972 0.23496441061235 0.561283622380387 0.574604204533377 1 FALSE Veillonella dispar_parvula (SPP13) 0.609829181060838 0.345854156306204 1.76325532002837 0.0778574373128422 1 FALSE