CompareSmoker 12 Weeks P1...1 CompareSmoker 12 Weeks P1...2 CompareSmoker 12 Weeks P1...3 CompareSmoker 12 Weeks P1...4 CompareSmoker 12 Weeks P1...5 CompareSmoker 12 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) 0.0227531872109651 0.387719314606753 0.0586846885202061 0.953203255108982 1 FALSE Capnocytophaga endodontalis (SP101) -0.209643309646219 0.312131074249852 -0.671651517395558 0.501805573066715 1 FALSE Prevotella veroralis (SP102) 0.310860956647619 0.328677958744015 0.945791916913199 0.344254729150619 1 FALSE Selenomonas artemidis (SP103) 0.116656901521851 0.272957440222149 0.427381284887888 0.669101636535887 1 FALSE Filifactor alocis (SP107) 0.0322540504058517 0.338884019765366 0.0951772539412851 0.92417403668162 1 FALSE Actinomyces israelii (SP109) -0.00802155850101598 0.485373604325416 -0.0165265651645077 0.986814309043687 1 FALSE Prevotella pleuritidis (SP11) 0.0364142783917255 0.422374824225226 0.0862131838906856 0.931296950500943 1 FALSE Prevotella oulorum (SP111) 0.443065102175484 0.372404720584665 1.18974083217819 0.234148271333814 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.772525181619184 0.349853746956244 2.20813750986009 0.0272346889209379 1 FALSE Treponema sp._HMT_231 (SP114) 0.0517950388841295 0.267652080932424 0.19351629437623 0.846554646173852 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.306194164716155 0.255215990546374 -1.19974521996308 0.230238305030612 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) -0.727953470276838 0.505958060081207 -1.43876247402799 0.150217831890639 1 FALSE Prevotella sp._HMT_317 (SP118) -0.0119840630523121 0.3968621916249 -0.0301970389349635 0.975909910043688 1 FALSE Streptococcus oralis (SP12) -0.337206362861602 0.502009817704275 -0.671712685627683 0.501766623868141 1 FALSE Treponema sp._HMT_257 (SP120) -0.31470547975999 0.273655994372092 -1.15000396933415 0.250142236418303 1 FALSE Schaalia sp._HMT_180 (SP121) -0.583564515414556 0.425387305721299 -1.37184280669835 0.170112378091621 1 FALSE Schaalia sp._HMT_178 (SP122) -0.0760005227150845 0.361770171211949 -0.210079571957187 0.833605568934116 1 FALSE Streptococcus cristatus (SP123) -0.362487429581911 0.490450673556957 -0.739090491920416 0.459852050018986 1 FALSE Prevotella salivae (SP124) 0.34251674125458 0.322137789166504 1.06326160038785 0.287663333935701 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) -0.351486717172799 0.406229124298165 -0.865242534690383 0.386905684092308 1 FALSE Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP128) 0.00607432857658995 0.241317309286956 0.0251715411320405 0.97991813664799 1 FALSE Prevotella maculosa (SP129) 0.097902102036214 0.299307541358289 0.327095340103774 0.743595776196742 1 FALSE Selenomonas sputigena (SP13) -0.0197876184283759 0.438324206293886 -0.0451437957207153 0.963992693049229 1 FALSE Lautropia mirabilis (SP131) 0.79665577540198 0.439954701154949 1.81076772974726 0.0701768135687845 1 FALSE Porphyromonas endodontalis (SP132) 0.278430898553236 0.456247226824027 0.610263212976472 0.54168746156124 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.520044108653551 0.387426883295816 -1.34230258940621 0.179497904189609 1 FALSE Olsenella sp._HMT_807 (SP136) -0.684899497629468 0.484353737346248 -1.41404813222254 0.157347770669588 1 FALSE Actinomyces sp._HMT_525 (SP137) -0.727454984862346 0.439607185809807 -1.6547841080493 0.0979682987413752 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) 0.101527441322854 0.391614119704429 0.259253781246402 0.795439437711611 1 FALSE Capnocytophaga sp._HMT_864 (SP140) 0.240791650287617 0.29261460977509 0.822896882943386 0.410566635439239 1 FALSE Schaalia odontolytica (SP141) -0.266278952728859 0.340003530729712 -0.783165257600045 0.433530073828316 1 FALSE Actinomyces viscosus (SP146) -0.0549936836142593 0.321376165092699 -0.171119359764582 0.864129913498453 1 FALSE Streptococcus intermedius (SP147) 0.586442277909842 0.491517112576297 1.1931268777927 0.232819686571121 1 FALSE Campylobacter gracilis (SP151) 0.392966346471378 0.443336580885386 0.886383762166853 0.375410766186779 1 FALSE Aggregatibacter aphrophilus (SP152) 0.423378837346967 0.320224680539725 1.32213056355737 0.186124677898204 1 FALSE Actinomyces sp._HMT_448 (SP153) -0.707528525755864 0.593960353524366 -1.19120497110223 0.233573128507613 1 FALSE Streptococcus gordonii (SP155) -0.960452515353667 0.501573516442031 -1.91487884401622 0.0555079564225894 1 FALSE Selenomonas noxia (SP161) 0.0429883787718787 0.356192873062662 0.120688486555755 0.903937778729351 1 FALSE Mogibacterium timidum (SP165) 0.247933310760758 0.350353281894522 0.707666585624851 0.479152332417547 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) 0.293899039973663 0.334805973908685 0.877818984358449 0.38004196029877 1 FALSE Leptotrichia hongkongensis (SP167) 0.0175939634351636 0.421964922662448 0.0416953222655381 0.966741583011483 1 FALSE Actinomyces oris (SP173) -0.00394631764016207 0.510699543423518 -0.00772727857500633 0.993834585085052 1 FALSE Actinomyces naeslundii (SP179) 0.206390906520808 0.380595561313092 0.542284060824934 0.587622834224893 1 FALSE Treponema sp._HMT_237 (SP18) 0.572164297448444 0.324454992713742 1.76346276154625 0.07782247255777 1 FALSE Streptococcus anginosus (SP180) -0.391649227696788 0.478133856171399 -0.819120467295233 0.412717685557289 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) -0.567416660514705 0.396295001706115 -1.43180372720293 0.152200000298535 1 FALSE Oribacterium sp._HMT_078 (SP186) 0.537073882964726 0.401013259105895 1.33929208266628 0.180475605188471 1 FALSE Selenomonas flueggei (SP188) -0.391898176980249 0.254549572659976 -1.53957507327558 0.123663965363154 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.0226213372213832 0.426545013984499 -0.0530338803168035 0.95770491309823 1 FALSE Catonella morbi (SP19) 0.455796234780311 0.365759618965144 1.2461633574256 0.212704428479706 1 FALSE Actinomyces sp._HMT_175 (SP190) -0.0402578911161777 0.507166657405944 -0.0793780319118153 0.936731941492233 1 FALSE Tannerella forsythia (SP193) -0.157566774474783 0.355969160853155 -0.442641643723127 0.658024958350516 1 FALSE Alloprevotella rava (SP199) 0.176482172098664 0.332808761768209 0.530281027341395 0.595917099086083 1 FALSE Granulicatella adiacens (SP2) -0.504384038135586 0.497026274287336 -1.01480357121723 0.310199471074946 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.0385803883539921 0.288845571333973 -0.133567525982194 0.893744564553197 1 FALSE Treponema maltophilum (SP203) -0.443394690832605 0.231486214634196 -1.91542589926262 0.0554382108339387 1 FALSE Neisseria mucosa (SP205) -0.43960240022842 0.30489215715848 -1.44182915141343 0.149350576914276 1 FALSE Actinomyces sp._HMT_414 (SP206) -0.462125236689535 0.265781420834059 -1.73874168946543 0.0820802093969428 1 FALSE Peptostreptococcus stomatis (SP208) 0.024035670538152 0.325651299008938 0.0738079983445494 0.941163162628488 1 FALSE Prevotella sp._HMT_315 (SP210) -0.14214687265785 0.216762282893496 -0.655773092811042 0.511970131449493 1 FALSE Tannerella sp._HMT_286 (SP212) 0.0857770019025468 0.277918855663788 0.308640454414922 0.757595044058844 1 FALSE Capnocytophaga sputigena (SP216) 0.207182068562616 0.354267997541101 0.584817341675293 0.558670542540388 1 FALSE Actinomyces sp._HMT_169 (SP22) -0.337456357939572 0.57677738839863 -0.585072100132929 0.55849923775278 1 FALSE Streptococcus constellatus (SP222) 0.162740300619341 0.313707341281656 0.518764718589189 0.603924824101028 1 FALSE Prevotella melaninogenica (SP223) -0.0959394162188308 0.364123424341866 -0.263480484377615 0.792180263505323 1 FALSE Lachnoanaerobaculum orale (SP224) -0.211772889448302 0.297074060664978 -0.712862270688543 0.475930987989322 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) 0.307980523875628 0.281072656627151 1.09573278159238 0.273195732299751 1 FALSE Kingella oralis (SP232) 0.286926083862422 0.444727907513499 0.645172203081753 0.518815597533436 1 FALSE Arachnia propionica (SP235) -0.32137394908973 0.350693294433394 -0.916396048030986 0.359459207367469 1 FALSE Scardovia wiggsiae (SP236) -0.0299239321570906 0.487877975413433 -0.0613348699164637 0.951092520890009 1 FALSE Porphyromonas catoniae (SP24) -0.0431753603582814 0.289979482120137 -0.148891087199039 0.881639574206689 1 FALSE Dialister invisus (SP25) 0.352619342661336 0.419947847822209 0.839674127370747 0.401091124276668 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.808786834965071 0.394542197127938 -2.04993747399548 0.0403705327424125 1 FALSE Actinomyces massiliensis (SP253) -0.155234549132156 0.357515520321324 -0.434203664760164 0.664140552087729 1 FALSE Cardiobacterium hominis (SP257) 0.121246649147154 0.326199185512512 0.371695131478197 0.710119850241633 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.403448220996105 0.464499480071383 -0.868565495345882 0.385084834143975 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.319668425279111 0.326072833669761 -0.980358963613828 0.326908958568767 1 FALSE Treponema lecithinolyticum (SP264) 0.243369734329477 0.275616294917619 0.883001980714602 0.377235201337983 1 FALSE Mycoplasma faucium (SP271) 0.294460145044956 0.288207501764639 1.02169493591261 0.306925308665783 1 FALSE Peptidiphaga gingivicola (SP286) -0.135120368874441 0.395500536118006 -0.341643958819123 0.732618851239106 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.391678565138929 0.43909328882259 0.892016742476749 0.372383958514375 1 FALSE Neisseria elongata (SP295) 0.331994040893226 0.326764942379919 1.01600263013291 0.309628134084236 1 FALSE Mogibacterium neglectum (SP298) 0.0473722349582315 0.289383097889295 0.163700766574674 0.869966714050331 1 FALSE Stomatobaculum longum (SP3) 0.379350841770947 0.369706301602428 1.02608703212987 0.304850562276879 1 FALSE Tannerella sp._HMT_808 (SP30) -0.256096051375001 0.295418847010317 -0.866891378010346 0.38600152807098 1 FALSE Porphyromonas pasteri (SP31) 0.0229539708818305 0.356909855205096 0.06431307666929 0.948720941335078 1 FALSE Bulleidia extructa (SP316) -0.0983648196455083 0.247366383535596 -0.397648290926134 0.690889458590757 1 FALSE Neisseria sicca (SP318) -0.238980749870814 0.367031789445241 -0.65111730575716 0.514970766017962 1 FALSE Prevotella oris (SP32) 0.0552604934473486 0.473351819865915 0.116742961848128 0.907063744391893 1 FALSE Megasphaera micronuciformis (SP320) 0.319116501213332 0.325351240677672 0.980836896606405 0.326673180014181 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.0308825942311309 0.275427377308061 0.112126087584203 0.910723432950387 1 FALSE Shuttleworthia satelles (SP326) -0.0239076435873026 0.296437466073732 -0.0806498716371977 0.93572040351835 1 FALSE Actinomyces dentalis (SP346) -0.0658826903979043 0.462153684893068 -0.142555804598092 0.886641003706037 1 FALSE Cryptobacterium curtum (SP349) 0.0338845622309718 0.297260829445615 0.113989328140427 0.90924625321119 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP351) 0.263125600371445 0.278000884299349 0.946491954637504 0.343897723864276 1 FALSE Gemella haemolysans (SP354) -0.61654489436967 0.364559672646532 -1.69120432299559 0.0907977856517641 1 FALSE Alloprevotella tannerae (SP36) -0.336184495453267 0.425408115798489 -0.790263473987207 0.429373913541475 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -0.586539416016059 0.538587551270127 -1.08903262734694 0.276139497876544 1 FALSE Solobacterium moorei (SP371) -0.45314180761952 0.27106501392717 -1.67170894190451 0.094581730026595 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) -0.386448062076076 0.275050372465495 -1.40500832124689 0.160018803861008 1 FALSE Streptococcus mutans (SP4) -0.600252828392848 0.562106199512048 -1.0678637398305 0.285581980949253 1 FALSE Prevotella oralis (SP405) -0.230360219636067 0.2861278938002 -0.805095289999671 0.420764693564192 1 FALSE Rothia mucilaginosa (SP41) -0.285077021160082 0.414196667817798 -0.688264883109793 0.491285991599141 1 FALSE Lancefieldella rimae (SP42) 0.393064806236228 0.452588537066204 0.868481576630676 0.385130753684006 1 FALSE Fusobacterium nucleatum (SP43) 1.16142069591069 0.311024711645162 3.73417497846832 0.000188331529163059 0.0284380609036218 TRUE Campylobacter concisus (SP44) -0.61221513418652 0.370140746970975 -1.65400631839792 0.0981262289230155 1 FALSE Campylobacter showae (SP46) 0.576400343718585 0.321784555217788 1.79126168230314 0.0732513119915002 1 FALSE Peptococcus sp._HMT_167 (SP47) 0.511462798694604 0.355411457680315 1.43907234176635 0.150130027408016 1 FALSE Eikenella corrodens (SP48) 0.313524436658188 0.33992754733668 0.922327240362368 0.356357909271242 1 FALSE Actinomyces sp._HMT_170 (SP49) -0.041833688388384 0.383677792107921 -0.109033384910162 0.913176010849453 1 FALSE Schaalia meyeri (SP51) -0.470236263593563 0.383854735164523 -1.22503702707228 0.22056126990182 1 FALSE Veillonella parvula (SP52) -1.24762124551289 0.465871431214168 -2.6780376771791 0.0074054887565058 1 FALSE Abiotrophia defectiva (SP56) -0.227609728650986 0.295617387895763 -0.769947026022848 0.441331316933726 1 FALSE Streptococcus mitis (SP57) -0.803295615477814 0.537729831320075 -1.49386470433638 0.135210985392977 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) -0.0797289374795518 0.411318762564648 -0.193837346447381 0.846303243328721 1 FALSE Prevotella denticola (SP59) 0.736850298066298 0.485663472278776 1.51720345491278 0.129215324310045 1 FALSE Corynebacterium matruchotii (SP6) -0.952719588821744 0.509249151057031 -1.87083196279113 0.061368375832845 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) 0.436645067806112 0.315543223413165 1.38378844927492 0.166423240888581 1 FALSE Rothia aeria (SP61) -0.0264640985998199 0.402968062268944 -0.0656729430387403 0.947638214223072 1 FALSE Leptotrichia sp._HMT_215 (SP62) 0.0796766754846073 0.302324985226495 0.263546446301537 0.792129429443448 1 FALSE Haemophilus parainfluenzae (SP63) 0.837970688037385 0.531356818928948 1.57703949245721 0.11478643827778 1 FALSE Fretibacterium fastidiosum (SP65) -0.0492912892658096 0.363381771245069 -0.13564601520027 0.892101126746195 1 FALSE Rothia dentocariosa (SP66) -0.178358160730275 0.557519942098929 -0.319913508490476 0.749033897305354 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.348116643680865 0.385113444258898 0.903932721307018 0.366031077262693 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.339312195129501 0.304690360281177 -1.11362957074314 0.265438135024829 1 FALSE Prevotella sp._HMT_300 (SP69) 0.0932155635168197 0.368307141518319 0.253091925213683 0.800197178541294 1 FALSE Streptococcus sanguinis (SP7) 0.263537709927379 0.561190290824594 0.469604899151313 0.638637323827064 1 FALSE Bergeyella sp._HMT_322 (SP70) -0.000103853697095993 0.378293402573028 -0.00027453213931201 0.99978095504735 1 FALSE Treponema socranskii (SP72) -0.0788913144072033 0.437923908699025 -0.180148452368294 0.857036025299132 1 FALSE Prevotella intermedia (SP73) -0.121031485770591 0.400295019582086 -0.302355712286776 0.762380912147598 1 FALSE Gemella morbillorum (SP77) 0.0683138333820724 0.417769620227917 0.163520347278491 0.870108753950338 1 FALSE Anaeroglobus geminatus (SP79) 0.446457073840729 0.353308553692626 1.26364637701113 0.206356979764658 1 FALSE Veillonella atypica (SP80) 0.125440522401341 0.325231182175775 0.385696480768393 0.699721469494861 1 FALSE Capnocytophaga gingivalis (SP82) 0.386806143466673 0.41047067496829 0.942347814485297 0.346014595670237 1 FALSE Treponema denticola (SP84) 0.341625109547297 0.33766968437566 1.01171388891173 0.311674872791352 1 FALSE Leptotrichia wadei (SP85) 0.00644076326083315 0.475776276799164 0.0135373779125014 0.989199065068506 1 FALSE Porphyromonas gingivalis (SP86) -0.336942869443637 0.360246384521024 -0.935312286038982 0.349627385484441 1 FALSE Streptococcus salivarius (SP87) -0.775978743306326 0.469107687408242 -1.65415908571762 0.0980951934812572 1 FALSE Streptococcus sp._HMT_064 (SP9) -0.282625411859135 0.382071032624965 -0.739719548790173 0.459470183770134 1 FALSE Capnocytophaga leadbetteri (SP92) 0.470418123415828 0.402093319838872 1.16992275227138 0.242032056825137 1 FALSE Parvimonas micra (SP93) -0.14020379366423 0.45738243078539 -0.30653515357702 0.759197218487227 1 FALSE Bifidobacterium dentium (SP95) -0.472984693970218 0.366865624670397 -1.28925868809639 0.197308168008082 1 FALSE Corynebacterium durum (SP96) 0.00130928602627015 0.346516249158464 0.00377842606068208 0.996985259355374 1 FALSE Lancefieldella parvula (SP97) -0.195549192324245 0.420712726882384 -0.464804556242752 0.64207142465139 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) 0.145773485265227 0.407850283088892 0.357419110172483 0.720778072474868 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.163238266818551 0.353046479057451 -0.46237047103361 0.643815671337534 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) 0.084205063104901 0.348591502365883 0.241557991326246 0.809122676226481 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.32529793771858 0.39410562457023 0.825408005971282 0.409139991184116 1 FALSE Actinomyces viscosus_nov_95.841% (SPN468) -0.0437281975783985 0.324759911079627 -0.134647769279863 0.89289037106133 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) 0.196069535162532 0.278615938991284 0.703726914807504 0.48160285559114 1 FALSE Veillonella dispar_parvula (SPP13) -0.383752310746827 0.468959841440652 -0.818305272297802 0.413182896341341 1 FALSE