CompareSmoker 24 Weeks P1...1 CompareSmoker 24 Weeks P1...2 CompareSmoker 24 Weeks P1...3 CompareSmoker 24 Weeks P1...4 CompareSmoker 24 Weeks P1...5 CompareSmoker 24 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) 0.166315574932456 0.39412451525364 0.421987388491739 0.673034222745755 1 FALSE Capnocytophaga endodontalis (SP101) 0.161251209042071 0.361864233727943 0.445612453546052 0.655877213214624 1 FALSE Prevotella veroralis (SP102) -0.104022827968125 0.314782642677294 -0.330459224445759 0.741052997809169 1 FALSE Selenomonas artemidis (SP103) 0.102957442012649 0.307062313079612 0.335298203742624 0.73740014859364 1 FALSE Filifactor alocis (SP107) -0.126310490257298 0.322368785733207 -0.391819853060566 0.695191324992877 1 FALSE Actinomyces israelii (SP109) 0.13283377051856 0.480865404789341 0.276238983290455 0.782364517300762 1 FALSE Prevotella pleuritidis (SP11) -0.200570182513192 0.427548249640882 -0.46911707083741 0.638985957701334 1 FALSE Prevotella oulorum (SP111) -0.226834464703204 0.330843496121054 -0.685624675602529 0.492949817057913 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.350872012144753 0.330942369611434 1.06022088545724 0.2890441216244 1 FALSE Treponema sp._HMT_231 (SP114) 0.654093759271709 0.325653170043063 2.0085594719843 0.0445838730051402 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.473501126837294 0.254193767279327 -1.86275663603103 0.062496513572147 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) -0.772041222295862 0.497577221409222 -1.55160081506407 0.120757768022626 1 FALSE Prevotella sp._HMT_317 (SP118) -0.137433091412174 0.411905717381417 -0.333651817910829 0.73864231165112 1 FALSE Streptococcus oralis (SP12) -0.108136582577299 0.527665896712055 -0.204933809918568 0.837623839284586 1 FALSE Treponema sp._HMT_257 (SP120) -0.283408718204441 0.286840307494018 -0.98803658621218 0.323134730479979 1 FALSE Schaalia sp._HMT_180 (SP121) -0.468976476913599 0.452481251236497 -1.03645504787663 0.299989900429324 1 FALSE Schaalia sp._HMT_178 (SP122) -0.524675947311055 0.332740533089952 -1.57683208125779 0.114834167732445 1 FALSE Streptococcus cristatus (SP123) -0.184171887035884 0.520577026579761 -0.353784123448378 0.723500672649466 1 FALSE Prevotella salivae (SP124) 0.0595118233988912 0.309678927701271 0.192172660376488 0.847606960608699 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.321517920375048 0.433974701506149 0.74086788759619 0.458773547873048 1 FALSE Prevotella maculosa (SP129) -0.088132389844715 0.291582278283245 -0.302255645863027 0.762457187396068 1 FALSE Selenomonas sputigena (SP13) -0.350127776723683 0.424062107156449 -0.825652117496343 0.409001461601468 1 FALSE Lautropia mirabilis (SP131) 0.690757382600413 0.458192780320832 1.50756932947904 0.131664787401465 1 FALSE Porphyromonas endodontalis (SP132) 0.00569165032412472 0.43581491930914 0.0130597877033379 0.989580093224824 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.398540992052607 0.412044847439979 -0.967227219388203 0.333430457881227 1 FALSE Olsenella sp._HMT_807 (SP136) 0.593712963959448 0.515219423580153 1.15234973059412 0.24917738905963 1 FALSE Actinomyces sp._HMT_525 (SP137) -0.380101849401833 0.450436903916461 -0.843851483075479 0.398752402419725 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) 0.230878110555035 0.426384127083719 0.541479140262891 0.588177371698631 1 FALSE Schaalia odontolytica (SP141) -0.106230982980753 0.388155560771027 -0.273681466187775 0.784329421987984 1 FALSE Actinomyces sp._HMT_896 (SP145) -0.23989568444836 0.317971401867574 -0.754456794036684 0.450574979722172 1 FALSE Actinomyces viscosus (SP146) -0.0696002462542831 0.361513377449654 -0.192524677081904 0.8473312399436 1 FALSE Streptococcus intermedius (SP147) 0.585442248499812 0.502734078846362 1.16451673585217 0.24421466507879 1 FALSE Campylobacter gracilis (SP151) 1.32591343963942 0.403144666051761 3.28892715516961 0.00100570048972757 0.160912078356411 FALSE Actinomyces sp._HMT_448 (SP153) -0.198355241806697 0.673570975379863 -0.294483059776787 0.76838880617794 1 FALSE Streptococcus gordonii (SP155) 0.0782576325214017 0.518260439928888 0.151000590614517 0.879975249997824 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP157) -0.0595214727427275 0.263501186138177 -0.225886925273707 0.821289367148305 1 FALSE Selenomonas noxia (SP161) 0.538096492079507 0.389086895509596 1.38297253978382 0.166673285990039 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP162) 0.26295645791456 0.256270703684779 1.02608864038554 0.304849804274932 1 FALSE Mogibacterium timidum (SP165) 0.16202753898042 0.343370599584733 0.471873652480364 0.637016975352456 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) -0.453177317394111 0.288450342872875 -1.57107567590527 0.116165071838482 1 FALSE Leptotrichia hongkongensis (SP167) -0.0160704519503386 0.460514464783172 -0.0348967365398722 0.972162082893825 1 FALSE Prevotella sp._HMT_314 (SP17) -0.25633144635367 0.278068807673614 -0.92182740127595 0.356618612204532 1 FALSE Actinomyces oris (SP173) -0.158607084771438 0.560107481560239 -0.283172587392729 0.777044540788984 1 FALSE Actinomyces naeslundii (SP179) 0.0616839336912179 0.391225575005971 0.157668459405489 0.874718055319119 1 FALSE Treponema sp._HMT_237 (SP18) 0.0663726188375405 0.279263165638639 0.237670509412707 0.812136658396178 1 FALSE Streptococcus anginosus (SP180) -0.400969080912108 0.486419347547413 -0.824327985582488 0.409753221279514 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) -0.290713662341368 0.431097627069584 -0.674356906850809 0.500084432788276 1 FALSE Oribacterium sp._HMT_078 (SP186) 0.662304504504897 0.419529617231702 1.57868354771986 0.114408660355175 1 FALSE Selenomonas flueggei (SP188) -0.574254013371201 0.256684749009271 -2.23719568687916 0.0252735531408143 1 FALSE Actinomyces sp._HMT_171 (SP189) 0.450310016469363 0.513848752910967 0.876347395840399 0.380841206381065 1 FALSE Catonella morbi (SP19) 0.236102920081114 0.354208904396993 0.666564044975258 0.505050641925853 1 FALSE Actinomyces sp._HMT_175 (SP190) 0.242443822459519 0.504279435009109 0.48077277324454 0.630678002935197 1 FALSE Tannerella forsythia (SP193) 0.189791599337233 0.382245207752277 0.496517930082807 0.619529040259231 1 FALSE Slackia exigua (SP195) 0.126891435042716 0.304590701565022 0.416596548715155 0.676973534188754 1 FALSE Alloprevotella rava (SP199) -0.0286023496712336 0.333506343557787 -0.0857625356270851 0.931655188946897 1 FALSE Granulicatella adiacens (SP2) 0.345644776430246 0.492919302614821 0.701219803316043 0.483165853001892 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.184879207608876 0.325855803995438 -0.56736509014725 0.570466162722375 1 FALSE Treponema maltophilum (SP203) -0.358800964188185 0.265722801291421 -1.35028293561712 0.176925243895193 1 FALSE Neisseria mucosa (SP205) -0.333047195961466 0.321891736412055 -1.03465593641438 0.300829621063686 1 FALSE Actinomyces sp._HMT_414 (SP206) -0.527567470246687 0.296242694868895 -1.78086237866614 0.0749349359244976 1 FALSE Peptostreptococcus stomatis (SP208) -0.134767201641565 0.324123998695486 -0.415789025755475 0.677564389929755 1 FALSE Capnocytophaga sputigena (SP216) 0.062356585153129 0.346812822653771 0.179798960938018 0.857310399375169 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.0808431965260865 0.586701971278637 0.137792611042195 0.890404324188432 1 FALSE Streptococcus constellatus (SP222) 0.216361609259781 0.337119355231155 0.641795274885438 0.521006118032497 1 FALSE Prevotella melaninogenica (SP223) -0.324754822662811 0.371416713581156 -0.874367821338905 0.381917975564782 1 FALSE Lachnoanaerobaculum orale (SP224) -0.55694291523933 0.275369281129387 -2.02253102798943 0.0431215214754582 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) 0.0338665879676203 0.290876318303006 0.116429512602472 0.907312146768853 1 FALSE Prevotella sp._HMT_292 (SP23) -0.252246847216631 0.256640389972998 -0.98288054831576 0.325666232363578 1 FALSE Kingella oralis (SP232) 0.596365665534244 0.456888834807601 1.30527520066315 0.191799155386907 1 FALSE Arachnia propionica (SP235) -0.225627715566786 0.372846663234979 -0.605148812675814 0.545080123378847 1 FALSE Scardovia wiggsiae (SP236) -0.0192447580516973 0.506725361968498 -0.0379786754247633 0.969704684305683 1 FALSE Fretibacterium sp._HMT_359 (SP239) 0.375548433931079 0.296657727521831 1.26593174251105 0.205537520784878 1 FALSE Porphyromonas catoniae (SP24) -0.189472495457703 0.286867816057571 -0.660487112362854 0.508941286146912 1 FALSE Dialister invisus (SP25) 0.584642131972283 0.450442004198667 1.29792987004477 0.194311434738331 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.0868491075287509 0.466776327763662 -0.186061508184974 0.852396526797252 1 FALSE Actinomyces massiliensis (SP253) 0.318473186619445 0.423124188541405 0.752670717590708 0.451647810462976 1 FALSE Cardiobacterium hominis (SP257) 0.20486446257397 0.332291095301724 0.61652107285015 0.537550668261055 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.103030764160666 0.468824443034451 -0.219764062414925 0.826054909435793 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.244665607601752 0.326430310906636 -0.749518655060587 0.453544659035472 1 FALSE Mycoplasma faucium (SP271) 0.107967271007441 0.280872333771264 0.384399807406332 0.70068214324612 1 FALSE Olsenella uli (SP281) -0.197901963909941 0.330226173221296 -0.599292182020108 0.548978060374039 1 FALSE Peptidiphaga gingivicola (SP286) -0.00960918898843066 0.415469017832226 -0.0231285332383341 0.981547745537606 1 FALSE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP287) 0.213930385524946 0.252345061243961 0.847769258769535 0.396566486466367 1 FALSE Leptotrichia sp._HMT_417 (SP288) -0.0728247673262526 0.312074709131976 -0.233356837946952 0.815484326314036 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.50669190671414 0.423697784460775 1.19588047258493 0.231743206502789 1 FALSE Phocaeicola abscessus (SP293) 0.156206668746114 0.263959230220264 0.591783316748443 0.553995696263953 1 FALSE Neisseria elongata (SP295) 0.555516492534965 0.344463791877531 1.61269923177432 0.106809867541473 1 FALSE Mogibacterium neglectum (SP298) -0.0620125507171916 0.301840169694236 -0.205448303252713 0.837221884522106 1 FALSE Stomatobaculum longum (SP3) -0.0488253824788737 0.35179235715863 -0.138790344603357 0.889615824029366 1 FALSE Tannerella sp._HMT_808 (SP30) -0.367187702774928 0.293349540896714 -1.25170709881633 0.210676612430008 1 FALSE Porphyromonas pasteri (SP31) -0.247568025435501 0.335231932078474 -0.738497743638419 0.460212037801371 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_145 (SP314) -0.103898398814724 0.264062491429974 -0.393461404730692 0.693978724579563 1 FALSE Fretibacterium sp._HMT_362 (SP315) -0.149456377576016 0.284965485640139 -0.52447185749629 0.599950388816234 1 FALSE Bulleidia extructa (SP316) 0.0245406192053229 0.282004820527581 0.0870219847994506 0.930654037052943 1 FALSE Neisseria sicca (SP318) -0.301486954607861 0.387556985424927 -0.777916450860261 0.436618269357977 1 FALSE Prevotella oris (SP32) 0.474421152563882 0.475535992484782 0.997655614004999 0.318446383323577 1 FALSE Megasphaera micronuciformis (SP320) -0.256560311465462 0.278875935676286 -0.919980100983945 0.357583158004535 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) 0.193336351156068 0.29286299975585 0.660159703742864 0.509151348443352 1 FALSE Shuttleworthia satelles (SP326) -0.0302938699198632 0.312484805284216 -0.096945097513813 0.922769994812008 1 FALSE Actinomyces dentalis (SP346) 0.0834742788996518 0.493749221809029 0.169062097138733 0.865747797825704 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) -0.0628500060990001 0.26555092171014 -0.23667779307354 0.812906764099428 1 FALSE Gemella haemolysans (SP354) -0.781150949206563 0.348597457721636 -2.24083948951324 0.0250364739835102 1 FALSE Alloprevotella tannerae (SP36) -0.255839175370274 0.440438643473072 -0.580873588549946 0.561325654016746 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -0.41174111381469 0.578403190972053 -0.711858302722579 0.476552524982111 1 FALSE Solobacterium moorei (SP371) 0.0595256852153755 0.325698187554583 0.182763329640573 0.854983722630314 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.352006273445977 0.33564118745377 1.04875768113072 0.294289659138448 1 FALSE Streptococcus mutans (SP4) -0.0297520786543967 0.624792606135113 -0.0476191273108037 0.962019787931644 1 FALSE Prevotella oralis (SP405) -0.13273468738192 0.329451524943194 -0.402895956862871 0.687024765809634 1 FALSE Rothia mucilaginosa (SP41) -0.272685034384273 0.434293310800355 -0.627882188380346 0.530081120002138 1 FALSE Lancefieldella rimae (SP42) 0.621748377160318 0.466304478563237 1.3333527893106 0.182416057581944 1 FALSE Pseudoramibacter alactolyticus (SP423) 0.00567072801957094 0.280808234732561 0.0201943081369094 0.983888368409871 1 FALSE Fusobacterium nucleatum (SP43) 0.79542515638389 0.356709921535016 2.22989355878011 0.0257545101187226 1 FALSE Campylobacter concisus (SP44) -0.554110212981319 0.38067802865302 -1.45558758655436 0.145506661658423 1 FALSE Campylobacter showae (SP46) 0.568702637614535 0.344585407933317 1.65039675076603 0.0988618152504196 1 FALSE Peptococcus sp._HMT_167 (SP47) 0.136235220499558 0.330165592719591 0.412626946912856 0.679879955228238 1 FALSE Eikenella corrodens (SP48) 0.614093160784693 0.356597412803932 1.72209090345347 0.085053052680043 1 FALSE Actinomyces sp._HMT_170 (SP49) 0.612104334079051 0.470557545265881 1.30080654372079 0.193324681547512 1 FALSE Schaalia meyeri (SP51) -0.187657923975797 0.408073942777175 -0.459862550151275 0.645614882451821 1 FALSE Veillonella parvula (SP52) -0.728883230408894 0.502061643059032 -1.4517803550334 0.146562687933102 1 FALSE Abiotrophia defectiva (SP56) -0.460979689838226 0.293711126141303 -1.56950026338618 0.116531418145099 1 FALSE Streptococcus mitis (SP57) -0.231551240495297 0.546364125944308 -0.423803887371074 0.671708842852931 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.33132905435616 0.42348574398667 0.782385379108747 0.433988123744369 1 FALSE Prevotella denticola (SP59) 0.273350339702755 0.493678735968705 0.553700858041581 0.579783587956548 1 FALSE Corynebacterium matruchotii (SP6) 0.312489543937931 0.519307802627708 0.601742439371655 0.547345595561369 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) -0.167011479902092 0.261376895312924 -0.638968030063038 0.522843729838241 1 FALSE Rothia aeria (SP61) 0.388003836663868 0.464313452175619 0.83565064687618 0.403351467411762 1 FALSE Leptotrichia sp._HMT_215 (SP62) -0.14786247192739 0.296583506514613 -0.498552578547061 0.618094619791997 1 FALSE Haemophilus parainfluenzae (SP63) 1.09559488643873 0.579683556795523 1.88998786250753 0.0587595833941558 1 FALSE Fretibacterium fastidiosum (SP65) 0.126905014116233 0.374824030753967 0.338572246451118 0.73493199311454 1 FALSE Rothia dentocariosa (SP66) 0.140220512757783 0.56225548444849 0.249389319688582 0.803059645868678 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.368265715866054 0.403044959517572 0.91370877409521 0.360869892384232 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.299708170280713 0.341387514574376 -0.877911925555841 0.379991516905822 1 FALSE Prevotella sp._HMT_300 (SP69) -0.144033992930422 0.382902619012503 -0.376163509411041 0.706795341794892 1 FALSE Streptococcus sanguinis (SP7) 0.545579292892709 0.605472551781235 0.901080141928273 0.367545710443947 1 FALSE Bergeyella sp._HMT_322 (SP70) -0.126529003748103 0.409237210081606 -0.309182548974156 0.757182667904792 1 FALSE Treponema socranskii (SP72) 0.436266497555505 0.418902022295559 1.04145235481268 0.297665654888583 1 FALSE Prevotella intermedia (SP73) -0.170570265900905 0.410827179572814 -0.415187393585467 0.678004726626422 1 FALSE Gemella morbillorum (SP77) -0.0779907891132172 0.408436105784863 -0.190949791187897 0.848564930076065 1 FALSE Anaeroglobus geminatus (SP79) 0.209545878685483 0.34269154979241 0.611470807530614 0.540887938764729 1 FALSE Capnocytophaga granulosa (SP8) 0.414304613749921 0.326717152292751 1.26808345029491 0.204768150965515 1 FALSE Veillonella atypica (SP80) 0.288141406294339 0.372991893862559 0.772513856294461 0.439810143367835 1 FALSE Capnocytophaga gingivalis (SP82) 0.25281683797104 0.408694789503761 0.618595696504992 0.536182737611366 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) 0.0559888070409957 0.293560893609516 0.190722975232082 0.848742637463002 1 FALSE Treponema denticola (SP84) 0.0319335794602297 0.305711328675979 0.104456644111072 0.916806972985297 1 FALSE Leptotrichia wadei (SP85) 0.315659066573233 0.494188036663535 0.638742833000119 0.522990243161634 1 FALSE Porphyromonas gingivalis (SP86) -0.612096624528497 0.371277657444511 -1.6486222972358 0.099225037833346 1 FALSE Streptococcus salivarius (SP87) -0.273374284238165 0.499822877364327 -0.546942320206963 0.58441835976154 1 FALSE Streptococcus sp._HMT_064 (SP9) 0.359752664643785 0.461982590673983 0.778714765244606 0.436147756386018 1 FALSE Capnocytophaga leadbetteri (SP92) 0.544415701234404 0.407878674116905 1.33474911973055 0.181958471199081 1 FALSE Parvimonas micra (SP93) -0.025047496766545 0.443570024244899 -0.0564679653661991 0.954969014725206 1 FALSE Bifidobacterium dentium (SP95) -0.489671677936997 0.378244927821385 -1.29458888122415 0.195462090027251 1 FALSE Corynebacterium durum (SP96) 0.328090012287859 0.40506010726443 0.809978584421981 0.417952484192024 1 FALSE Lancefieldella parvula (SP97) 0.441378987013484 0.468471814350793 0.942167647001657 0.346106815088128 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) 0.193341151468759 0.462190350101605 0.418314989541119 0.67571683163551 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.60307350266731 0.340396880489631 -1.77167752477591 0.0764481025578671 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) -0.0425563233115685 0.391382519212417 -0.108733326662634 0.913414007705881 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.0329669727945452 0.36231019401196 -0.0909910163705106 0.927499729342403 1 FALSE Actinomyces viscosus_nov_95.841% (SPN468) 0.150274111476251 0.364654505657044 0.412099971740328 0.680266149393937 1 FALSE Actinomyces israelii_nov_97.037% (SPN575) -0.219149096390292 0.34858122466479 -0.628688755686813 0.529552840944228 1 FALSE Veillonella dispar_parvula (SPP13) 0.188972420421426 0.415792638136041 0.454487172424628 0.649478222529515 1 FALSE