CompareSmoker 12 Weeks P2...1 CompareSmoker 12 Weeks P2...2 CompareSmoker 12 Weeks P2...3 CompareSmoker 12 Weeks P2...4 CompareSmoker 12 Weeks P2...5 CompareSmoker 12 Weeks P2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) -0.0955848614139306 0.389754264596546 -0.245243914169548 0.806267575767359 1 FALSE Leptotrichia buccalis (SP10) -0.0231895141078761 0.355660986738475 -0.0652011746369242 0.948013825895963 1 FALSE Capnocytophaga endodontalis (SP101) 0.148406413938306 0.357485866513629 0.415139248400602 0.678039969011725 1 FALSE Prevotella veroralis (SP102) 0.15290831991706 0.398403863141567 0.383802302295261 0.701124981532943 1 FALSE Selenomonas artemidis (SP103) 0.184930051643149 0.305643919022626 0.605050649247365 0.545145343598082 1 FALSE Filifactor alocis (SP107) -0.311387774965977 0.407162132810819 -0.764775871509293 0.444405017913722 1 FALSE Actinomyces israelii (SP109) 0.334034164589229 0.413639950589912 0.80754812032263 0.419350762512372 1 FALSE Prevotella pleuritidis (SP11) 0.303695546582652 0.462810325452534 0.656198727385134 0.511696267607245 1 FALSE Prevotella oulorum (SP111) 0.0413581202493652 0.42558934800569 0.0971784666208617 0.922584668244088 1 FALSE Parvimonas sp._HMT_110 (SP112) -0.185613888309922 0.423214344962509 -0.438581278066944 0.660964965157645 1 FALSE Treponema sp._HMT_231 (SP114) 0.30032551713162 0.320486462439629 0.93709267731767 0.34871088781324 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.160615851881428 0.267754226003415 -0.599862994802477 0.548597546257902 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) -0.70591019541609 0.522044551953727 -1.35220297343254 0.176310392765173 1 FALSE Prevotella sp._HMT_317 (SP118) -0.384118561312725 0.500071262301525 -0.768127645537679 0.442411354073763 1 FALSE Prevotella loescheii (SP119) 0.252841863444537 0.383992638263979 0.65845497608399 0.510245819137195 1 FALSE Streptococcus oralis (SP12) -0.885703358102611 0.513737523483429 -1.72403867270011 0.0847008619599631 1 FALSE Treponema sp._HMT_257 (SP120) -0.0690916282439784 0.303749730526024 -0.227462352392306 0.820064240438487 1 FALSE Schaalia sp._HMT_180 (SP121) 0.510770722539527 0.439015454838578 1.1634458808001 0.244648643643867 1 FALSE Schaalia sp._HMT_178 (SP122) 0.87154665144756 0.287830007194801 3.02799093097233 0.00246185475385729 0.40866788914031 FALSE Streptococcus cristatus (SP123) 0.23305504011561 0.483059870482907 0.482455807978064 0.629482184364709 1 FALSE Prevotella salivae (SP124) -0.343617422108573 0.396797387999498 -0.865977026313005 0.386502760444015 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) 0.00645016117282667 0.449528332062897 0.0143487311316435 0.988551761803122 1 FALSE Selenomonas sp._HMT_134 (SP127) 0.00417065503373634 0.29485151705034 0.0141449332716992 0.988714352467283 1 FALSE Prevotella maculosa (SP129) -0.724786588881425 0.340389824946828 -2.12928394376842 0.0332307753976419 1 FALSE Selenomonas sputigena (SP13) -0.80855761648857 0.483048208075119 -1.67386526431919 0.0941570822291727 1 FALSE Lautropia mirabilis (SP131) 0.624257646862219 0.440163273124271 1.41824110501371 0.156120384831778 1 FALSE Porphyromonas endodontalis (SP132) -0.444171404604525 0.482484185213382 -0.920592670634556 0.357263130232305 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.16460159918027 0.467543930738536 -0.352055899688964 0.724796340689958 1 FALSE Olsenella sp._HMT_807 (SP136) 0.445177989899507 0.530735357190597 0.838794672086704 0.40158454103543 1 FALSE Actinomyces sp._HMT_525 (SP137) 0.113090260659824 0.372262767697616 0.303791489434382 0.761286750956184 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) -0.113510330175071 0.392221226448266 -0.289403842833689 0.772272354607157 1 FALSE Capnocytophaga sp._HMT_864 (SP140) 0.332900682754648 0.293445143198209 1.13445627051932 0.25660320688906 1 FALSE Schaalia odontolytica (SP141) 0.407039284810038 0.352327773786638 1.15528583067803 0.247973396424825 1 FALSE Prevotella dentalis (SP143) -0.406445679223315 0.268402831148235 -1.51431219068938 0.129946678114733 1 FALSE Actinomyces viscosus (SP146) -0.112625211247162 0.342256929253969 -0.329066270455517 0.742105598031849 1 FALSE Streptococcus intermedius (SP147) 0.379281410017431 0.556563056941243 0.681470689236695 0.495573707165588 1 FALSE Campylobacter gracilis (SP151) -0.427879127784059 0.455476560393196 -0.939409763292072 0.347520402208547 1 FALSE Actinomyces sp._HMT_448 (SP153) -0.173668561318665 0.643109019357276 -0.270045289509746 0.787125411450265 1 FALSE Streptococcus gordonii (SP155) 0.708169493018596 0.572028419482731 1.23799704507509 0.215717156491872 1 FALSE Streptococcus chosunense (SP156) -0.0981633349961586 0.290377330381231 -0.338054402756861 0.735322191048302 1 FALSE Peptoanaerobacter [Eubacterium] yurii (SP157) 0.338192799478547 0.289171930667342 1.16952153239105 0.242193571065068 1 FALSE Selenomonas noxia (SP161) 0.0955754520173585 0.438242873287489 0.218087863700776 0.827360653192328 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP162) 0.109156811796455 0.297535881701864 0.366869404698663 0.71371643408998 1 FALSE Selenomonas infelix (SP164) -0.0202921731673791 0.306220703615757 -0.0662664964444779 0.947165656537583 1 FALSE Mogibacterium timidum (SP165) -0.286052777237643 0.42114712198965 -0.679222918314691 0.496996627981091 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) 0.460410233731392 0.29486063255238 1.56145033586199 0.118417533216197 1 FALSE Leptotrichia hongkongensis (SP167) -0.366230111325426 0.40896647266204 -0.89550155283284 0.370519036076268 1 FALSE Prevotella sp._HMT_314 (SP17) -0.012690589928983 0.325584397551319 -0.038977881079153 0.968908023551598 1 FALSE Capnocytophaga ochracea (SP172) -0.235743946669341 0.364607021667274 -0.646569957954545 0.517910306532823 1 FALSE Actinomyces oris (SP173) 0.507464611021958 0.487861420933623 1.04018188208205 0.298255407328197 1 FALSE Mogibacterium vescum (SP174) -0.202224460235323 0.291669837617889 -0.693333468715587 0.488100304031684 1 FALSE Selenomonas sp._HMT_137 (SP177) -0.281504857879884 0.281014509380351 -1.00174492235513 0.316466804350879 1 FALSE Actinomyces naeslundii (SP179) 0.33902971053014 0.365422785366776 0.927773866618238 0.353524882736444 1 FALSE Treponema sp._HMT_237 (SP18) -0.117881044310421 0.383404710315717 -0.307458518736902 0.758494392125221 1 FALSE Streptococcus anginosus (SP180) -0.38788163608495 0.543412924525256 -0.713788021188155 0.475358267951355 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) 0.0306847129837463 0.40327485907988 0.0760888319538618 0.939348425192995 1 FALSE Oribacterium sp._HMT_078 (SP186) -0.231776404480879 0.420026746135743 -0.551813441913467 0.581076176817902 1 FALSE Actinomyces sp._HMT_171 (SP189) 0.105446504483863 0.362018016023585 0.291274190279507 0.770841625248696 1 FALSE Catonella morbi (SP19) 0.0975834667954055 0.404929125429533 0.240989004413779 0.809563638629192 1 FALSE Actinomyces sp._HMT_175 (SP190) 0.829710430059729 0.493380865936632 1.68168343635421 0.0926302415935503 1 FALSE Leptotrichia sp._HMT_212 (SP192) -0.10118419252797 0.309138901448096 -0.327309801691063 0.74343357970268 1 FALSE Tannerella forsythia (SP193) -0.295317311078456 0.397922303358275 -0.742148174621323 0.457997564489754 1 FALSE Alloprevotella rava (SP199) -0.39190044660025 0.357540249317816 -1.09610162030147 0.273034305653196 1 FALSE Granulicatella adiacens (SP2) -0.629808036814857 0.541180326054676 -1.16376742925283 0.244518274933998 1 FALSE Peptostreptococcus stomatis (SP208) -0.232473526019123 0.422274542554789 -0.550526973784978 0.581957981125517 1 FALSE Tannerella sp._HMT_286 (SP212) -0.373629562857177 0.318496192084642 -1.17310527454558 0.240753591603228 1 FALSE Capnocytophaga sputigena (SP216) 0.23092250941977 0.412238176892107 0.560167695191918 0.575365059591304 1 FALSE Actinomyces sp._HMT_169 (SP22) 0.135216660839769 0.56234819900749 0.240450064707983 0.809981370341702 1 FALSE Streptococcus constellatus (SP222) -0.0757439165897966 0.39439741559421 -0.192049728509703 0.847703252639794 1 FALSE Prevotella melaninogenica (SP223) -0.187609179954131 0.415178547628468 -0.451875900201899 0.651358386917422 1 FALSE Lachnoanaerobaculum orale (SP224) -0.140088466442392 0.364300999749699 -0.384540439193532 0.700577929395373 1 FALSE Campylobacter sp._HMT_044 (SP228) 0.295229775859068 0.290390522016175 1.01666464115046 0.30931299193101 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) 0.213376313485199 0.324683226471611 0.657183051320502 0.511063222165293 1 FALSE Kingella oralis (SP232) 0.901624115832523 0.456650138032164 1.97443084046329 0.0483327741490503 1 FALSE Arachnia propionica (SP235) -0.17175278121669 0.35645975840648 -0.481829371103473 0.629927162838239 1 FALSE Scardovia wiggsiae (SP236) -0.307108370727252 0.516420916938336 -0.594686157462369 0.55205327647984 1 FALSE Porphyromonas catoniae (SP24) 0.317344912522978 0.329277927122682 0.96376005308349 0.335166238551125 1 FALSE Dialister invisus (SP25) -0.0510358828933027 0.500550028042263 -0.101959604503296 0.918788738864019 1 FALSE Peptidiphaga sp._HMT_183 (SP251) -0.400809107687089 0.379732052898093 -1.05550507161072 0.29119439121695 1 FALSE Actinomyces massiliensis (SP253) 0.132230322902215 0.34716604561352 0.380884952814248 0.703288618337978 1 FALSE Selenomonas dianae (SP255) 0.21242677397404 0.302665769518231 0.70185265519841 0.482771057268668 1 FALSE Cardiobacterium hominis (SP257) 0.152682833824786 0.34533118430227 0.442134509610756 0.65839187346426 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.049681219968564 0.487479608487881 -0.101914457760953 0.918824574083475 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.242116881595649 0.332574140883382 -0.728008741005956 0.466608235531782 1 FALSE Mycoplasma faucium (SP271) -0.508508499449369 0.309480916223628 -1.64310131188162 0.100361973496458 1 FALSE Peptidiphaga gingivicola (SP286) 0.336322447122852 0.390601163768509 0.86103800582165 0.389217111231365 1 FALSE Prevotella sp._HMT_304 (SP29) -0.267715142340492 0.323537932369058 -0.827461374869364 0.407975605949509 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.281602503590159 0.472470128564777 0.596021815062855 0.551160653363983 1 FALSE Phocaeicola abscessus (SP293) -0.257605535754232 0.277710723963261 -0.927603846469792 0.353613101730347 1 FALSE Mogibacterium neglectum (SP298) 0.476432140970527 0.312478174285758 1.5246893388939 0.127336602130748 1 FALSE Stomatobaculum longum (SP3) 0.149954910011108 0.406995596512814 0.368443568667422 0.712542515670264 1 FALSE Tannerella sp._HMT_808 (SP30) -0.0662720497139795 0.248409341546134 -0.266785658306943 0.789634197182884 1 FALSE Bacteroidetes_[G-3] bacterium_HMT_365 (SP309) 0.331552912194382 0.270379489873307 1.22625023203402 0.220104523466664 1 FALSE Porphyromonas pasteri (SP31) -0.344777638467765 0.370979614379177 -0.929370847087487 0.352696930687958 1 FALSE Leptotrichia sp._HMT_392 (SP310) 0.0362661079227115 0.288127458890495 0.12586828087251 0.899836191143736 1 FALSE Bulleidia extructa (SP316) 0.377858104114052 0.309022337311453 1.22275336922723 0.221422862712737 1 FALSE Treponema sp._HMT_268 (SP317) 0.227668662100375 0.238614913314938 0.9541258714198 0.340019931744903 1 FALSE Neisseria sicca (SP318) 0.605769175986599 0.351261917375317 1.72455124231229 0.084608376758351 1 FALSE Prevotella oris (SP32) -0.834524141202511 0.519791239839998 -1.60549866415485 0.108384106929409 1 FALSE Megasphaera micronuciformis (SP320) 0.286645959967544 0.352176115677219 0.813927882123229 0.41568626663933 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP323) -0.634582939623842 0.362176662074932 -1.75213647391932 0.0797503438417821 1 FALSE Shuttleworthia satelles (SP326) 0.19508307775956 0.323632708754199 0.602791598261246 0.546647336695684 1 FALSE Actinomyces dentalis (SP346) 0.984558863984521 0.420339354545319 2.34229522726826 0.0191655478575168 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP351) 0.0153427849467534 0.332502284760285 0.04614339705309 0.963195956979935 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) 0.0714709084284215 0.310478600040226 0.230195924676167 0.817939528472668 1 FALSE Gemella haemolysans (SP354) -0.241625521686051 0.355782276891613 -0.679138724382443 0.497049968071208 1 FALSE Alloprevotella tannerae (SP36) -0.684512374258284 0.4860905396207 -1.40819933420719 0.15907205336923 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) 0.417410943837306 0.565647089988889 0.737935280185928 0.46055377875029 1 FALSE Solobacterium moorei (SP371) 0.00348203722643468 0.371598460545872 0.00937042963342642 0.992523588278554 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP382) 0.177974020301592 0.337894667285837 0.526714498725833 0.598391865637107 1 FALSE Streptococcus mutans (SP4) -0.424470429466424 0.541594663300636 -0.783741898192972 0.433191572481585 1 FALSE Porphyromonas sp._HMT_275 (SP40) -0.102283654311836 0.273900189351144 -0.37343404016675 0.70882542847974 1 FALSE Prevotella oralis (SP405) -0.472093148604116 0.329149234595474 -1.43428299076655 0.151491522213084 1 FALSE Rothia mucilaginosa (SP41) 0.87523663478339 0.472441445104483 1.85258224876911 0.0639422587023899 1 FALSE Lancefieldella rimae (SP42) 0.404709831252879 0.487828035982805 0.829615769084549 0.40675605821391 1 FALSE Pseudoramibacter alactolyticus (SP423) -0.605851564470622 0.292985365377581 -2.06785606403869 0.0386535599258003 1 FALSE Fusobacterium nucleatum (SP43) 0.0573519052641781 0.327463116340389 0.175140046015327 0.860969592373816 1 FALSE Campylobacter concisus (SP44) 0.640853365563451 0.387744445130234 1.65277252482161 0.098377167796593 1 FALSE Capnocytophaga sp._HMT_380 (SP45) -0.251143573301197 0.337844155559133 -0.743371075594169 0.457257050999879 1 FALSE Campylobacter showae (SP46) 0.940808313850424 0.340674616375161 2.76160379619942 0.00575182305459427 0.949050804008055 FALSE Peptococcus sp._HMT_167 (SP47) 0.385216006566628 0.321777905897617 1.19714871501835 0.231248595104661 1 FALSE Eikenella corrodens (SP48) 0.43962753835055 0.318930376216485 1.37844360755445 0.168066367532468 1 FALSE Actinomyces sp._HMT_170 (SP49) 0.445807630224826 0.414945320492988 1.07437681113061 0.282653831277226 1 FALSE Schaalia meyeri (SP51) 0.651803813041571 0.372544868465444 1.74959815102655 0.0801876790169878 1 FALSE Veillonella parvula (SP52) -0.0218991289947772 0.520057710309488 -0.0421090362870401 0.966411776646409 1 FALSE Streptococcus mitis (SP57) -0.0728892830977907 0.495941716837938 -0.146971469878605 0.88315453948409 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.0473882784760697 0.469993540600408 0.100827510130314 0.919687388193823 1 FALSE Prevotella denticola (SP59) -0.0354596972829515 0.525810260050239 -0.0674381996265412 0.946232859487998 1 FALSE Corynebacterium matruchotii (SP6) 1.17210497230572 0.519631165625317 2.25564794770388 0.024092687855978 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) 0.529259559165349 0.314313099932772 1.68386096309238 0.0922085421424505 1 FALSE Rothia aeria (SP61) 0.565554575615395 0.344912613625306 1.63970395188209 0.101066736865994 1 FALSE Leptotrichia sp._HMT_215 (SP62) 0.346526453475025 0.306136232385853 1.131935448393 0.257661574131814 1 FALSE Haemophilus parainfluenzae (SP63) 1.43602626394623 0.523549577889388 2.74286586140582 0.00609055595772017 0.998851177066108 FALSE Prevotella multiformis (SP64) -0.133697677261629 0.315886307763322 -0.423246193253181 0.6721156472785 1 FALSE Fretibacterium fastidiosum (SP65) 0.276172046066684 0.387930667821457 0.71191083607185 0.476519991589742 1 FALSE Rothia dentocariosa (SP66) 0.342759494452127 0.584993623916343 0.585920051841699 0.557929241670772 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.175857787876565 0.459621746653652 0.382614158613958 0.702005870651763 1 FALSE Aggregatibacter sp._HMT_458 (SP68) 0.0275091516321591 0.33424114661107 0.0823033067923541 0.934405524904041 1 FALSE Prevotella sp._HMT_300 (SP69) -0.502049290650655 0.44150418862168 -1.1371336979112 0.255482398707241 1 FALSE Streptococcus sanguinis (SP7) 0.555927095903067 0.62446414039484 0.890246628976264 0.37333347199514 1 FALSE Bergeyella sp._HMT_322 (SP70) 0.399206766488515 0.395581427992241 1.00916458215613 0.312895709426644 1 FALSE Treponema socranskii (SP72) 0.0899469913424362 0.451083965411909 0.199401881333336 0.841948388943262 1 FALSE Prevotella intermedia (SP73) -0.805384128079355 0.473155097965358 -1.70215671677772 0.0887259941625968 1 FALSE Leptotrichia hofstadii (SP74) -0.286578373507148 0.274564879151782 -1.04375466517232 0.296598911175013 1 FALSE Gemella morbillorum (SP77) -0.718995701255742 0.458091380058066 -1.56954645416948 0.116520664044389 1 FALSE Anaeroglobus geminatus (SP79) -0.429003566809656 0.409470754967558 -1.04770258096612 0.294775658073317 1 FALSE Capnocytophaga granulosa (SP8) -0.254866272971748 0.356765249032721 -0.714380881161363 0.474991690957968 1 FALSE Veillonella atypica (SP80) -0.693075436266834 0.289707132098295 -2.39233128727974 0.0167417231636806 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP81) -0.0660213722647469 0.265243659763403 -0.24890838983159 0.80343164536281 1 FALSE Capnocytophaga gingivalis (SP82) 0.0595362693206715 0.440923240231055 0.135026380758413 0.892591016504456 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP83) -0.0877977657265482 0.276495962481162 -0.317537243360398 0.750835984391221 1 FALSE Treponema denticola (SP84) -0.462894495604855 0.390204067431696 -1.18628823797662 0.235508490005548 1 FALSE Leptotrichia wadei (SP85) 0.817414278355635 0.538714900399387 1.51734113489274 0.129180577664153 1 FALSE Porphyromonas gingivalis (SP86) -0.540495280505005 0.410747361513744 -1.31588253790139 0.188213470567826 1 FALSE Streptococcus salivarius (SP87) -0.117334545675853 0.470274599443447 -0.249502196832901 0.802972341800429 1 FALSE Streptococcus sp._HMT_064 (SP9) 0.094271564829769 0.495307111088664 0.190329520249698 0.849050922615302 1 FALSE Treponema sp._HMT_262 (SP91) -0.11396246916235 0.249059170784614 -0.457571864562676 0.647260060958437 1 FALSE Capnocytophaga leadbetteri (SP92) 0.468536572948798 0.43235331497331 1.08368909575198 0.278502671999452 1 FALSE Parvimonas micra (SP93) -0.0935343837348147 0.4688171695311 -0.199511429644024 0.84186270351205 1 FALSE Corynebacterium durum (SP96) 0.381524831978459 0.337209789695712 1.13141683200459 0.257879690273557 1 FALSE Lancefieldella parvula (SP97) 0.0023743778061011 0.458758599490608 0.00517565841542271 0.995870440495074 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.55336510069073 0.367038618429428 -1.5076481680827 0.131644597766564 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) 0.21356824292785 0.415685681849166 0.513773392380987 0.607410432706876 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.623117588034908 0.414913173886328 1.50180237035718 0.133148155985715 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) -0.243459800472006 0.328425606393727 -0.741293601145517 0.458515440671167 1 FALSE Veillonella dispar_parvula (SPP13) -0.660265849130359 0.413633853497744 -1.59625679461935 0.110431472036376 1 FALSE