CompareSmoker 12 Weeks P1...1 CompareSmoker 12 Weeks P1...2 CompareSmoker 12 Weeks P1...3 CompareSmoker 12 Weeks P1...4 CompareSmoker 12 Weeks P1...5 CompareSmoker 12 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Actinomyces sp._HMT_897 (SP1) -0.155932930973541 0.424517839047071 -0.367317734688297 0.713382026913773 1 FALSE Capnocytophaga endodontalis (SP101) -0.411597372793434 0.357458687793871 -1.15145438297693 0.249545351741853 1 FALSE Prevotella veroralis (SP102) -0.276956143411748 0.384132124516495 -0.720991882051915 0.470914509395627 1 FALSE Filifactor alocis (SP107) 0.325809473045048 0.336491174602889 0.968255626405517 0.332916719981517 1 FALSE Actinomyces israelii (SP109) 0.855084503029717 0.448557010330067 1.90630061137716 0.0566112149802232 1 FALSE Prevotella pleuritidis (SP11) 0.527603574340449 0.421857844310195 1.25066673870475 0.211056090387966 1 FALSE Prevotella oulorum (SP111) -0.501588353414013 0.449285170555957 -1.11641422037886 0.264244869277791 1 FALSE Parvimonas sp._HMT_110 (SP112) 0.56600199074824 0.391182608811874 1.44689967804893 0.147925023335295 1 FALSE Treponema sp._HMT_231 (SP114) -0.45452129432031 0.338568328168863 -1.3424802514121 0.179440329434775 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP116) -0.433470665529795 0.29752547086624 -1.45691951773996 0.145138597703572 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP117) -0.576266165243636 0.507335554239887 -1.13586788946228 0.256011858870136 1 FALSE Prevotella sp._HMT_317 (SP118) -0.151545127995431 0.447031061654383 -0.339003574907276 0.734607037079817 1 FALSE Prevotella loescheii (SP119) 0.00964268146066671 0.391978909482921 0.0246000007331692 0.980374018715817 1 FALSE Streptococcus oralis (SP12) 0.324243216386378 0.558937461216556 0.580106432087493 0.561842846481967 1 FALSE Schaalia sp._HMT_180 (SP121) -0.215457111196644 0.459723872567834 -0.468666353985896 0.639308140228795 1 FALSE Schaalia sp._HMT_178 (SP122) -0.150825915450429 0.395138903374798 -0.381703533016508 0.70268127919645 1 FALSE Streptococcus cristatus (SP123) -0.628894755495721 0.532858879579984 -1.18022759795508 0.237909705386971 1 FALSE Prevotella salivae (SP124) 0.132387898597097 0.352850676155761 0.375195252675827 0.707515260567321 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP125) -0.050839570475247 0.416561369387252 -0.122045811761255 0.902862736889356 1 FALSE Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP128) -0.0579442319784522 0.261415188595939 -0.221655950022149 0.824581723856695 1 FALSE Prevotella maculosa (SP129) -0.375086489176573 0.353368521037433 -1.06145982691209 0.288480980561072 1 FALSE Selenomonas sputigena (SP13) -0.0722034672609614 0.476819964704292 -0.151427105838027 0.879638808632128 1 FALSE Lautropia mirabilis (SP131) 0.356195701847331 0.504218102556396 0.706431800130561 0.479919650849059 1 FALSE Porphyromonas endodontalis (SP132) 0.908411551994242 0.453048177259638 2.00511026771804 0.0449512600412231 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP135) -0.716041093951251 0.425917590708145 -1.68117285966221 0.0927293435530647 1 FALSE Olsenella sp._HMT_807 (SP136) 0.387358406794835 0.483960726109947 0.800392234114538 0.423483579004197 1 FALSE Actinomyces sp._HMT_525 (SP137) -0.137019551057068 0.456428293199656 -0.30019951238459 0.764024976992346 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP14) 0.186397250200081 0.421081713522914 0.442662894668634 0.658009584938567 1 FALSE Capnocytophaga sp._HMT_864 (SP140) -0.353081832731943 0.382289529795735 -0.923597967542039 0.35569567243459 1 FALSE Schaalia odontolytica (SP141) -0.540878267826261 0.394164475101622 -1.37221465147719 0.169996625655201 1 FALSE Actinomyces viscosus (SP146) 0.159204298535908 0.320773423774069 0.49631386747314 0.619672983797978 1 FALSE Streptococcus intermedius (SP147) 0.200590448286037 0.543359674968844 0.36916697636338 0.712003269101617 1 FALSE Campylobacter gracilis (SP151) 0.184786249394088 0.492719965532843 0.375033005196479 0.70763592050559 1 FALSE Aggregatibacter aphrophilus (SP152) 0.47263487946052 0.325569773258656 1.45171609369591 0.146580562526856 1 FALSE Actinomyces sp._HMT_448 (SP153) -0.339459428965328 0.644664353939963 -0.526567704404115 0.598493824115601 1 FALSE Streptococcus gordonii (SP155) -0.967430518586377 0.601254574046304 -1.6090198068279 0.107612010709701 1 FALSE Selenomonas sp._HMT_138 (SP159) -0.208691314322774 0.269766079075279 -0.773601021441017 0.439166767871145 1 FALSE Selenomonas noxia (SP161) -0.605395410909557 0.44435235173379 -1.36242198009621 0.173064750947567 1 FALSE Mogibacterium timidum (SP165) 0.312380013905217 0.368288845744768 0.848192980902015 0.396330505642263 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP166) 0.309282979697987 0.337591260412097 0.916146286845358 0.35959017332518 1 FALSE Leptotrichia hongkongensis (SP167) 0.179190972135586 0.448895501587894 0.399181928760094 0.689759157728003 1 FALSE Prevotella sp._HMT_314 (SP17) -0.341322335839871 0.336341131921971 -1.01480997548363 0.310196417672131 1 FALSE Capnocytophaga ochracea (SP172) -0.911515655250784 0.349146434505643 -2.61069730395901 0.00903578322633096 1 FALSE Actinomyces oris (SP173) -0.0813358993219149 0.548648020438367 -0.148247868017327 0.882147155928114 1 FALSE Actinomyces naeslundii (SP179) 0.183845266435371 0.433365926978429 0.424226398501611 0.671400710314051 1 FALSE Treponema sp._HMT_237 (SP18) 0.232228660101712 0.376025257071259 0.61758792989191 0.536847003008179 1 FALSE Streptococcus anginosus (SP180) -0.275028414631981 0.51742539743313 -0.531532499170617 0.59504982660666 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP183) -0.39047751141447 0.438012243133555 -0.891476248748163 0.372673728012439 1 FALSE Oribacterium sp._HMT_078 (SP186) 0.287066511733342 0.456764683496864 0.628477905812769 0.529690915876767 1 FALSE Actinomyces sp._HMT_171 (SP189) -0.206646256298649 0.484258533080146 -0.426727134748183 0.669578084198642 1 FALSE Catonella morbi (SP19) 0.366969243881021 0.400798721852931 0.915594845673376 0.359879435762056 1 FALSE Actinomyces sp._HMT_175 (SP190) 0.299023194511939 0.517105781470649 0.57826310443004 0.563086500087131 1 FALSE Tannerella forsythia (SP193) 0.316994994562215 0.340367466555592 0.931331650965649 0.351682034394225 1 FALSE Alloprevotella rava (SP199) 0.0990409129548455 0.36293498746007 0.272888854414297 0.784938654366355 1 FALSE Granulicatella adiacens (SP2) -0.707302581286032 0.533218948734194 -1.32647683088738 0.18468180457175 1 FALSE Streptococcus oralis_subsp._dentisani_clade_058 (SP200) -0.363967573885177 0.341560581355359 -1.0656018104926 0.286603680440217 1 FALSE Peptostreptococcus stomatis (SP208) -0.280470655685553 0.373236683666137 -0.751455223882645 0.452378738406164 1 FALSE Capnocytophaga sputigena (SP216) 0.126824059152444 0.381529182921235 0.332409851800581 0.739579800438287 1 FALSE Actinomyces sp._HMT_169 (SP22) -0.112993893584553 0.649936628647283 -0.173853709121961 0.861980433276972 1 FALSE Streptococcus constellatus (SP222) 0.0895754009678092 0.350760790329019 0.255374612663479 0.798433777028336 1 FALSE Prevotella melaninogenica (SP223) 0.180649967914977 0.386144573070629 0.467829876459082 0.639906253486529 1 FALSE Lachnoanaerobaculum orale (SP224) -0.350057684553014 0.334064501468749 -1.04787453624659 0.294696415582001 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP229) 0.34570868335197 0.307394528857453 1.12464162793309 0.260740926230295 1 FALSE Kingella oralis (SP232) -0.350629489197292 0.498825857862312 -0.702909609978707 0.482112081871751 1 FALSE Arachnia propionica (SP235) -0.671851294275729 0.405259747300579 -1.65782883385509 0.0973520196775605 1 FALSE Scardovia wiggsiae (SP236) 0.180081855188611 0.517358090440771 0.348079712129731 0.727780320139667 1 FALSE Porphyromonas catoniae (SP24) -0.19396458689745 0.331450642245785 -0.585199007560277 0.558413912134505 1 FALSE Dialister invisus (SP25) -0.570395811039988 0.482261374110115 -1.18275242775248 0.236907279368171 1 FALSE Cardiobacterium hominis (SP257) -0.0974880411154571 0.380262552426135 -0.256370343315343 0.797664885397482 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP26) -0.50227627049744 0.506272061673692 -0.992107423105587 0.321145125831804 1 FALSE Fretibacterium sp._HMT_360 (SP260) -0.0358670943263451 0.325579985001493 -0.110163695493077 0.912279553783793 1 FALSE Mycoplasma faucium (SP271) 0.333775027614078 0.287297493977727 1.16177493577426 0.245326897635447 1 FALSE Peptidiphaga gingivicola (SP286) 0.324449315053405 0.382691610725161 0.847808799462854 0.396544461737079 1 FALSE Leptotrichia sp._HMT_417 (SP288) -0.187950913565251 0.322184407052289 -0.583364400794068 0.559648017321184 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP292) 0.456281111106787 0.483699706667651 0.943314839387109 0.345519887796527 1 FALSE Neisseria elongata (SP295) 0.319787545496014 0.340817919130311 0.938294401632515 0.34809313599603 1 FALSE Fusobacterium periodonticum (SP296) -0.421276726911198 0.34343990576508 -1.22663883794378 0.219958365018232 1 FALSE Mogibacterium neglectum (SP298) -0.262527591670904 0.341348606035615 -0.76908939139922 0.441840245497402 1 FALSE Stomatobaculum longum (SP3) -0.335491541864088 0.450618296101307 -0.744513804181317 0.456565693106466 1 FALSE Tannerella sp._HMT_808 (SP30) 0.0223164603255592 0.291411914833923 0.0765804663075546 0.938957298940349 1 FALSE Porphyromonas pasteri (SP31) 0.0183922941766702 0.387362567227319 0.0474808247692062 0.962130012714626 1 FALSE Neisseria sicca (SP318) -0.292012837624593 0.40346834339563 -0.723756503836171 0.469215237102605 1 FALSE Prevotella oris (SP32) -0.107494126088362 0.525060888169052 -0.204726972643509 0.837785445607836 1 FALSE Megasphaera micronuciformis (SP320) 0.328867532308308 0.334532979780816 0.983064607034499 0.325575642173187 1 FALSE Shuttleworthia satelles (SP326) -0.0497148587056704 0.319519776083621 -0.155592430975727 0.876354291485436 1 FALSE Actinomyces dentalis (SP346) -0.241661584056637 0.515173509166475 -0.469087753459282 0.639006912350965 1 FALSE Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP351) 0.313174112896557 0.303983058748673 1.03023541570283 0.302899508363448 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP352) -0.327859587775342 0.303969869332678 -1.07859238974938 0.280769475357061 1 FALSE Gemella haemolysans (SP354) -0.891517410344954 0.406824104570752 -2.1914075403315 0.0284223139390864 1 FALSE Alloprevotella tannerae (SP36) -0.488456817320406 0.474672207605716 -1.02904027135741 0.303460751300545 1 FALSE Streptococcus parasanguinis_clade_411 (SP37) -0.885631396525551 0.639502434566195 -1.38487572314923 0.16609047146126 1 FALSE Solobacterium moorei (SP371) -0.395007319313319 0.3102879269493 -1.27303476869682 0.203005704405922 1 FALSE Streptococcus mutans (SP4) -1.08661143997251 0.639984986464768 -1.69787020469788 0.0895322618915265 1 FALSE Prevotella oralis (SP405) -0.407200618195536 0.337537544039152 -1.2063861498865 0.227668633836487 1 FALSE Rothia mucilaginosa (SP41) -0.48026166441321 0.478538955716 -1.00359993408401 0.315571486364839 1 FALSE Lancefieldella rimae (SP42) 0.421517024595989 0.493161295162426 0.854724465871068 0.392703702786004 1 FALSE Fusobacterium nucleatum (SP43) 1.67144514310754 0.418483765010348 3.99405014688256 6.49541164730972e-05 0.0092884386556529 TRUE Campylobacter concisus (SP44) -0.41629766143648 0.394107555336407 -1.05630469601409 0.290829031201846 1 FALSE Campylobacter showae (SP46) 0.296185786322161 0.374210702962108 0.791494695308466 0.428655370462696 1 FALSE Peptococcus sp._HMT_167 (SP47) 0.45522814590027 0.368124397683732 1.23661498331706 0.216230054645228 1 FALSE Eikenella corrodens (SP48) 0.264004398612711 0.353012376040714 0.747861595034456 0.454543644659281 1 FALSE Actinomyces sp._HMT_170 (SP49) -0.0680877868658908 0.414225193871982 -0.164373842714486 0.869436853972016 1 FALSE Schaalia meyeri (SP51) 0.0076970733837346 0.357647311385094 0.0215214070921585 0.982829727026623 1 FALSE Veillonella parvula (SP52) -1.23260500152153 0.543056332808824 -2.26975532196851 0.0232224327421122 1 FALSE Streptococcus mitis (SP57) -1.24705947648329 0.575772840749617 -2.16588798259344 0.0303197478464469 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP58) 0.256423683602363 0.422043667987921 0.60757618950867 0.543468596772592 1 FALSE Prevotella denticola (SP59) 0.705269291509197 0.529002062680834 1.33320707283274 0.182463858926218 1 FALSE Corynebacterium matruchotii (SP6) -0.799477104392026 0.561566633346052 -1.4236549269824 0.154546387323479 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP60) 0.259547009723322 0.350384410207341 0.740749308936816 0.458845455798682 1 FALSE Rothia aeria (SP61) -0.144329802921338 0.430087357789635 -0.335582528310289 0.737185701093399 1 FALSE Leptotrichia sp._HMT_215 (SP62) 0.0955710555592113 0.31452598236331 0.303857426471105 0.761236513831234 1 FALSE Haemophilus parainfluenzae (SP63) 0.437159676174736 0.610419797025077 0.71616234975547 0.473891108091763 1 FALSE Fretibacterium fastidiosum (SP65) 0.145129512117785 0.379526720558422 0.382396032364325 0.702167632890257 1 FALSE Rothia dentocariosa (SP66) -0.219445127642494 0.618475280824715 -0.35481632725866 0.722727195830291 1 FALSE Lachnoanaerobaculum saburreum (SP67) 0.11170118570543 0.435485828047249 0.256497866317043 0.797566427780072 1 FALSE Aggregatibacter sp._HMT_458 (SP68) -0.124409653971265 0.312061791388082 -0.398669934623776 0.690136423860881 1 FALSE Prevotella sp._HMT_300 (SP69) 0.380631973024322 0.392268063318598 0.970336381208723 0.331878848483933 1 FALSE Streptococcus sanguinis (SP7) -0.72714872547951 0.598399595289474 -1.21515577751645 0.224306683297199 1 FALSE Bergeyella sp._HMT_322 (SP70) 0.2119602443703 0.397383800051459 0.533389243202294 0.593764162129 1 FALSE Treponema socranskii (SP72) 0.192803965755432 0.457411348890906 0.421511110782292 0.673381899622075 1 FALSE Prevotella intermedia (SP73) 0.60819322773833 0.379735217638829 1.60162449909187 0.10923866991304 1 FALSE Gemella morbillorum (SP77) -0.064939927555205 0.446060196009457 -0.145585569248659 0.884248560669635 1 FALSE Anaeroglobus geminatus (SP79) 0.480532407543468 0.366187535977826 1.31225768310303 0.189433204991428 1 FALSE Veillonella atypica (SP80) 0.0421553788793634 0.36596215600465 0.115190541392558 0.908294095646803 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP81) -0.267138029027944 0.341999718110525 -0.781105991852345 0.434740158092649 1 FALSE Capnocytophaga gingivalis (SP82) 0.425098245669447 0.444673582311987 0.955978188448339 0.339083254256428 1 FALSE Treponema denticola (SP84) 0.184372449368002 0.369096665356031 0.499523476296259 0.617410652361973 1 FALSE Leptotrichia wadei (SP85) -0.195896584266596 0.518928682894269 -0.377501939522794 0.705800623297497 1 FALSE Streptococcus salivarius (SP87) -1.26563980054465 0.555265293206885 -2.27934253415167 0.0226467114687192 1 FALSE Streptococcus sp._HMT_064 (SP9) -0.325953762817174 0.416062899955048 -0.783424243912136 0.433378023963625 1 FALSE Treponema sp._HMT_262 (SP91) 0.283375224215436 0.296464227066223 0.955849638317868 0.339148205824856 1 FALSE Capnocytophaga leadbetteri (SP92) 0.328132537912945 0.427062579336844 0.768347670316795 0.442280660654509 1 FALSE Parvimonas micra (SP93) 0.437335238686733 0.516830944315324 0.846186250063058 0.397448851216532 1 FALSE Bifidobacterium dentium (SP95) -0.296562303178718 0.403744226549651 -0.734530139819219 0.462625697866214 1 FALSE Corynebacterium durum (SP96) -0.171570330173215 0.396125994672113 -0.433120604254284 0.664927154792404 1 FALSE Lancefieldella parvula (SP97) -1.12596966825819 0.503698686203957 -2.23540322636907 0.0253908884932137 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) 0.166869966890602 0.435769132147021 0.382932049519981 0.701770147205443 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.658774924820306 0.453011105593577 -1.45421363115838 0.145887086964635 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) -0.395149761406317 0.453987434024751 -0.870398014991696 0.384082931108074 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) 0.707317474012988 0.360277694842754 1.96325635513378 0.0496163940576401 1 FALSE Actinomyces viscosus_nov_95.841% (SPN468) 0.0205486046561913 0.331240911899443 0.0620352254748938 0.950534780138639 1 FALSE Prevotella veroralis_nov_96.402% (SPN608) -0.0202704291037191 0.309561797377703 -0.0654810421551685 0.947791000105838 1 FALSE Veillonella dispar_parvula (SPP13) -0.525431559614362 0.5389481391136 -0.974920444995936 0.329599723752375 1 FALSE