Comp1Smoker 12 Weeks P1...1 Comp1Smoker 12 Weeks P1...2 Comp1Smoker 12 Weeks P1...3 Comp1Smoker 12 Weeks P1...4 Comp1Smoker 12 Weeks P1...5 Comp1Smoker 12 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance StreptococcusStreptococcus mitis (SP1) -0.874155572933364 0.553243136549783 -1.58005678730133 0.114093862221727 1 FALSE CorynebacteriumCorynebacterium durum (SP10) -0.128220912138357 0.371187320633638 -0.34543451516468 0.729767732899998 1 FALSE ActinomycesActinomyces sp._HMT_175 (SP100) -0.153364338789693 0.53259373649457 -0.287957458529475 0.773379303147976 1 FALSE LachnoanaerobaculumLachnoanaerobaculum saburreum (SP101) 0.495508922141874 0.390433748109506 1.26912421003857 0.204396766773761 1 FALSE PrevotellaPrevotella intermedia (SP104) -0.0127828710286678 0.406959891233024 -0.0314106409600654 0.974942055080654 1 FALSE NeisseriaNeisseria elongata (SP105) 0.24618934133203 0.342486267646529 0.718829817685172 0.472245783195659 1 FALSE SolobacteriumSolobacterium moorei (SP106) -0.543049135218319 0.289059621646107 -1.87867517478165 0.0602888595395737 1 FALSE PrevotellaPrevotella maculosa (SP107) 0.111139239806328 0.307269708179051 0.36169930470844 0.717576746690032 1 FALSE FusobacteriumFusobacterium nucleatum_subsp._vincentii (SP109) 0.0369440244861282 0.420284851238592 0.0879023461760591 0.929954291846122 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) -0.29138282419192 0.475879286984211 -0.612304069879781 0.540336597458463 1 FALSE StreptococcusStreptococcus salivarius (SP115) -0.833145040331672 0.488543065564949 -1.70536662795168 0.0881260682970134 1 FALSE Peptostreptococcaceae_[XI][G-5]Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) 0.00251295887688992 0.285374692327573 0.00880582246587363 0.992974061010916 1 FALSE LeptotrichiaLeptotrichia hongkongensis (SP119) 0.071740611467782 0.433851394164568 0.165357568127508 0.868662549582785 1 FALSE SelenomonasSelenomonas sputigena (SP12) 0.107438220381657 0.44845247789182 0.239575486095483 0.810659370645342 1 FALSE PeptidiphagaPeptidiphaga gingivicola (SP121) -0.23350042912282 0.416893874250537 -0.560095610765668 0.575414224146044 1 FALSE OlsenellaOlsenella sp._HMT_807 (SP124) -0.636485652031061 0.50993548921589 -1.24816896547005 0.211969186564683 1 FALSE SelenomonasSelenomonas noxia (SP128) -0.0230946641093994 0.370867142843714 -0.0622720684618092 0.950346171433411 1 FALSE CapnocytophagaCapnocytophaga leadbetteri (SP129) 0.376502264111322 0.422204499240809 0.891753320460425 0.372525166879025 1 FALSE ParvimonasParvimonas micra (SP13) -0.045527448933528 0.480168286990139 -0.0948156097915374 0.924461287911282 1 FALSE CapnocytophagaCapnocytophaga sp._HMT_864 (SP130) 0.216010294916903 0.304327517532932 0.709795475177586 0.477830975437583 1 FALSE GemellaGemella haemolysans (SP131) -0.384177446168783 0.366111146396076 -1.04934648931219 0.29401867671178 1 FALSE TreponemaTreponema sp._HMT_262 (SP132) 0.367247521631566 0.276269977364091 1.32930666276335 0.183746816999504 1 FALSE DialisterDialister invisus (SP134) 0.412013724926016 0.429267026329175 0.959807531571435 0.337152091064465 1 FALSE ActinomycesActinomyces sp._HMT_170 (SP136) -0.148121374089823 0.406844549293053 -0.364073635365655 0.715803023707482 1 FALSE LeptotrichiaLeptotrichia wadei (SP137) -0.302292485013895 0.501019079261712 -0.603355236410049 0.546272394326852 1 FALSE TreponemaTreponema sp._HMT_237 (SP140) 0.47106867314247 0.338313615462856 1.39240234980785 0.163800593311854 1 FALSE BergeyellaBergeyella sp._HMT_322 (SP141) -0.00169603559156216 0.391102164619524 -0.0043365538342446 0.996539941493372 1 FALSE GemellaGemella morbillorum (SP142) 0.0861558132433138 0.435069595521206 0.198027658402791 0.843023423946109 1 FALSE StreptococcusStreptococcus oralis_subsp._dentisani_clade_058 (SP144) -0.0200638434070335 0.302709126797545 -0.0662809331826074 0.947154162955943 1 FALSE StomatobaculumStomatobaculum longum (SP145) 0.321497353485001 0.386576739276491 0.831652090828612 0.405605350283395 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) -0.374688643603372 0.286516794013872 -1.30773710802178 0.190962492406335 1 FALSE PrevotellaPrevotella salivae (SP147) 0.251215686588831 0.339311598849091 0.740368697801454 0.459076306927256 1 FALSE NeisseriaNeisseria mucosa (SP149) -0.430316507979233 0.319715887945552 -1.34593407523281 0.178323778322188 1 FALSE CampylobacterCampylobacter showae (SP151) 0.49814697934617 0.333742460810609 1.49260893605281 0.135539582851056 1 FALSE PorphyromonasPorphyromonas endodontalis (SP156) 0.228803492605032 0.472470748152538 0.484270176512943 0.628194138619374 1 FALSE ScardoviaScardovia wiggsiae (SP158) -0.14937490654028 0.511663324627708 -0.291939834947065 0.770332625612643 1 FALSE CapnocytophagaCapnocytophaga endodontalis (SP159) -0.181777771583733 0.321053795391931 -0.56619100659385 0.571263942904107 1 FALSE Erysipelotrichaceae_[G-1]Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP166) -0.0156773765467684 0.249809816428342 -0.0627572477771926 0.94995981005639 1 FALSE StreptococcusStreptococcus intermedius (SP167) 0.590635689536425 0.499607815178225 1.18219865981425 0.237126884298668 1 FALSE MycoplasmaMycoplasma faucium (SP169) 0.264461249201633 0.300096522180557 0.881253962158601 0.378180378054707 1 FALSE FusobacteriumFusobacterium nucleatum (SP17) 1.29942791263491 0.34879093967869 3.72552083443439 0.000194912352079905 0.0284572034036661 TRUE LachnoanaerobaculumLachnoanaerobaculum orale (SP174) -0.247761609977886 0.308169143269062 -0.803979293155791 0.421408933879655 1 FALSE ActinomycesActinomyces sp._HMT_897 (SP175) 0.132001082706363 0.395892875883655 0.333426264394703 0.738812540202215 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) -0.460630564964743 0.412072853291588 -1.11783768643161 0.263636322654757 1 FALSE Bacteroidetes_[G-5]Bacteroidetes_[G-5] bacterium_HMT_511 (SP178) 0.193119299993282 0.28447802125588 0.678854904645081 0.497229801246557 1 FALSE CatonellaCatonella morbi (SP18) 0.460226837217474 0.375838665742038 1.22453296897706 0.220751237027922 1 FALSE LeptotrichiaLeptotrichia sp._HMT_215 (SP184) 0.0546004869465781 0.314570225776125 0.173571693925783 0.862202079284705 1 FALSE PrevotellaPrevotella veroralis (SP19) 0.377358009940424 0.326206091242644 1.15680859453888 0.247350569673 1 FALSE PrevotellaPrevotella pleuritidis (SP193) 0.223088091881338 0.422975926139668 0.527425033186578 0.597898463363791 1 FALSE LautropiaLautropia mirabilis (SP194) 0.772847708884706 0.456122539732784 1.69438613872814 0.0901919317411606 1 FALSE GranulicatellaGranulicatella adiacens (SP20) -0.485993531314762 0.518888162123772 -0.936605547765101 0.34896149723178 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) -0.23085329120669 0.277115444445768 -0.833058192293819 0.404811910764141 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) -0.452828227889577 0.402721489548138 -1.12442032432305 0.260834753848476 1 FALSE StreptococcusStreptococcus cristatus (SP214) -0.244976200015008 0.509597642063172 -0.480724751832034 0.630712137003849 1 FALSE NeisseriaNeisseria sicca (SP215) -0.238571574165519 0.381432523648213 -0.625462065698279 0.531667838039758 1 FALSE PeptococcusPeptococcus sp._HMT_167 (SP218) 0.468692063726405 0.370328062336343 1.26561314519213 0.205651617525712 1 FALSE TannerellaTannerella sp._HMT_808 (SP22) -0.240206192517162 0.304801986276207 -0.788072923840759 0.430654051778214 1 FALSE OribacteriumOribacterium sp._HMT_078 (SP220) 0.56829825433184 0.412427169414021 1.37793602477567 0.168223041167006 1 FALSE FretibacteriumFretibacterium sp._HMT_360 (SP223) -0.39901285055329 0.342697999349775 -1.16432792520051 0.244291143883188 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP226) 0.124498184302315 0.324077974707555 0.384161201990543 0.700858972411613 1 FALSE StreptococcusStreptococcus oralis_subsp._tigurinus_clade_070 (SP230) -0.737304544072299 0.525252533304011 -1.4037143989281 0.16040391298834 1 FALSE TreponemaTreponema sp._HMT_231 (SP231) -0.0378450038223654 0.286045113184889 -0.13230431871739 0.89474359156423 1 FALSE Bacteroidales_[G-2]Bacteroidales_[G-2] bacterium_HMT_274 (SP232) -0.100959208361956 0.410524059001634 -0.24592762871799 0.805738255882084 1 FALSE CapnocytophagaCapnocytophaga sputigena (SP24) 0.222509773081025 0.366883842488665 0.606485615642504 0.544192331319415 1 FALSE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP244) 0.559540174718927 0.312973982490066 1.78781689860334 0.0738055535927744 1 FALSE FilifactorFilifactor alocis (SP245) 0.0882836994588629 0.347264255516946 0.254226278853381 0.799320749789027 1 FALSE KingellaKingella oralis (SP253) 0.230555807609791 0.460981702893215 0.500140908332752 0.616975863070948 1 FALSE ActinomycesActinomyces israelii (SP256) -0.194330584675098 0.51110327317966 -0.380217844167059 0.703783714430503 1 FALSE ArachniaArachnia propionica (SP258) -0.263733882633471 0.365262280434428 -0.722039741743377 0.470270044040851 1 FALSE ShuttleworthiaShuttleworthia satelles (SP260) -0.140892642290858 0.315923900097716 -0.44597019170528 0.655618778007938 1 FALSE ActinomycesActinomyces sp._HMT_448 (SP264) -1.080227696288 0.625799326266046 -1.72615669424476 0.084319226558571 1 FALSE RothiaRothia aeria (SP269) -0.130539779666949 0.426867748089954 -0.305808485768854 0.759750467101276 1 FALSE AggregatibacterAggregatibacter sp._HMT_458 (SP27) -0.268979986695994 0.312611386535632 -0.860429268673922 0.389552457624787 1 FALSE SchaaliaSchaalia sp._HMT_180 (SP275) -0.470088074828979 0.438999550157734 -1.07081675746609 0.284251830586376 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) -0.32241035765574 0.422094479055465 -0.763834576508104 0.444965828931621 1 FALSE AlloprevotellaAlloprevotella sp._HMT_912 (SP299) 0.210802956035464 0.28416731431147 0.741826893589906 0.458192224037255 1 FALSE ActinomycesActinomyces naeslundii (SP3) 0.144979697754556 0.393569895809009 0.368370902597977 0.71259669076288 1 FALSE PrevotellaPrevotella melaninogenica (SP30) 0.0601242594041846 0.363651900110206 0.165334649388505 0.868680587821047 1 FALSE ActinomycesActinomyces oris (SP31) -0.0260711740754831 0.540126667324652 -0.0482686296616652 0.961502155303965 1 FALSE MogibacteriumMogibacterium timidum (SP319) 0.356153550062891 0.35575120742924 1.0011309663193 0.316763495884554 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) 0.279401639706746 0.293637605538185 0.951518587664048 0.341341187340828 1 FALSE LancefieldellaLancefieldella parvula (SP338) -0.231146030331461 0.437704265718625 -0.528087223349226 0.597438798283418 1 FALSE StreptococcusStreptococcus gordonii (SP34) -0.773842856278467 0.519827267978051 -1.4886538355105 0.136578547307511 1 FALSE LancefieldellaLancefieldella rimae (SP341) 0.302896302633332 0.471942370216347 0.641807817540261 0.520997973154556 1 FALSE FretibacteriumFretibacterium fastidiosum (SP345) 0.00455159311320454 0.373652196654748 0.0121813631873552 0.990280918745837 1 FALSE CorynebacteriumCorynebacterium matruchotii (SP35) -1.15334282123556 0.526726894581683 -2.18964103238268 0.0285502807298651 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) 0.321213944093907 0.339619626079671 0.945805010746209 0.344248049386756 1 FALSE PrevotellaPrevotella sp._HMT_300 (SP36) 0.213064270445553 0.378361168508768 0.563124041733197 0.573350421470377 1 FALSE ActinomycesActinomyces massiliensis (SP360) -0.229815554897618 0.378628090676329 -0.606969109151693 0.543871412726857 1 FALSE CryptobacteriumCryptobacterium curtum (SP364) -0.0644892462219556 0.317034171275294 -0.203414180757055 0.838811316865317 1 FALSE ActinomycesActinomyces viscosus (SP366) -0.105344876578344 0.339435063682572 -0.310353548733136 0.756292114002353 1 FALSE AggregatibacterAggregatibacter aphrophilus (SP37) 0.408492490983051 0.329352041871892 1.24029135711854 0.214867648028697 1 FALSE Peptostreptococcaceae_[XI][G-1]Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) -0.435040838108396 0.274159942414447 -1.58681401183965 0.11255477440041 1 FALSE Peptostreptococcaceae_[XI][G-6]Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP391) 0.175837556838424 0.29137619940339 0.603472614436118 0.546194328361206 1 FALSE StreptococcusStreptococcus parasanguinis_clade_411 (SP4) -0.68068985379624 0.565831229361904 -1.20299095997911 0.228979818830261 1 FALSE StreptococcusStreptococcus sanguinis (SP40) 0.25718409933354 0.593897444244837 0.433044630560011 0.664982346654841 1 FALSE StreptococcusStreptococcus mutans (SP41) -0.71457481752506 0.583195745712692 -1.22527440019614 0.220471850413138 1 FALSE PrevotellaPrevotella oralis (SP417) -0.0570372410733869 0.281383529834229 -0.20270284158774 0.839367302020791 1 FALSE PrevotellaPrevotella oris (SP42) -0.0141863052476857 0.489885997158472 -0.0289583807864926 0.976897783982545 1 FALSE PeptidiphagaPeptidiphaga sp._HMT_183 (SP428) -0.575190617675069 0.391330226682408 -1.46983437121988 0.141606617701216 1 FALSE SchaaliaSchaalia meyeri (SP43) -0.492360211414221 0.404159284178025 -1.21823308455125 0.223135410471376 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 0.504763169896802 0.452138007982352 1.11639181175962 0.264254456934127 1 FALSE BifidobacteriumBifidobacterium dentium (SP46) -0.571445240495463 0.390478141403918 -1.46345001141652 0.143344282534888 1 FALSE ActinomycesActinomyces dentalis (SP47) -0.267378286313423 0.486911317274402 -0.549131385588108 0.582915287785721 1 FALSE EikenellaEikenella corrodens (SP48) 0.369933417763319 0.342339038844953 1.08060541097349 0.279872674568038 1 FALSE PrevotellaPrevotella denticola (SP49) 0.76629374389923 0.497164342183199 1.54132885020314 0.123236770746683 1 FALSE StreptococcusStreptococcus sp._HMT_064 (SP5) -0.260155185441224 0.393837137687629 -0.660565397587176 0.508891065810139 1 FALSE TreponemaTreponema socranskii (SP51) -0.153180499571568 0.455535315753843 -0.336264816961726 0.736671178697327 1 FALSE SchaaliaSchaalia odontolytica (SP52) -0.412196316537053 0.369025359537099 -1.11698642351872 0.264000130136439 1 FALSE ActinomycesActinomyces sp._HMT_169 (SP53) -0.462637589422915 0.602699521223871 -0.767609020965307 0.442719501402377 1 FALSE TreponemaTreponema denticola (SP54) 0.290044508064403 0.351777412757268 0.824511459650019 0.40964900711629 1 FALSE PrevotellaPrevotella oulorum (SP57) 0.377136008712475 0.387461766968018 0.973350252500153 0.330379254632394 1 FALSE RothiaRothia mucilaginosa (SP59) -0.230823650630763 0.43343537667355 -0.532544556935444 0.594348890282507 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP6) 0.466146797545651 0.422070196820495 1.10442955000659 0.269406848233763 1 FALSE SelenomonasSelenomonas flueggei (SP60) -0.444165626174031 0.270671769536045 -1.64097507078544 0.10080259014165 1 FALSE AlloprevotellaAlloprevotella tannerae (SP63) -0.255539221568735 0.442202851823835 -0.577877823525518 0.56334660852244 1 FALSE TannerellaTannerella forsythia (SP64) -0.277691428473149 0.375718313808255 -0.73909473738048 0.45984947223556 1 FALSE VeillonellaVeillonella atypica (SP65) 0.122161217270197 0.33248550799926 0.367418171111594 0.713307119417902 1 FALSE PorphyromonasPorphyromonas gingivalis (SP67) -0.182590789621939 0.370071188263253 -0.493393691302583 0.621734439107709 1 FALSE StreptococcusStreptococcus constellatus (SP68) 0.122948487382611 0.32693182157092 0.376067666927737 0.706866590968754 1 FALSE StreptococcusStreptococcus anginosus (SP69) -0.446032845111642 0.492433662704331 -0.905772449962365 0.365056305951622 1 FALSE ActinomycesActinomyces sp._HMT_171 (SP74) -0.155187590158023 0.45210207393051 -0.343257859467099 0.731404480235151 1 FALSE CampylobacterCampylobacter gracilis (SP78) 0.27351294524987 0.456291337287508 0.599426118575487 0.548888764152779 1 FALSE VeillonellaVeillonella parvula (SP8) -1.2484478167522 0.483267028788815 -2.58334987156295 0.00978460410649119 1 FALSE ParvimonasParvimonas sp._HMT_110 (SP80) 0.743867012801848 0.35854311312059 2.07469335089881 0.0380149640173057 1 FALSE SelenomonasSelenomonas artemidis (SP81) 0.0198026557441591 0.292612253777486 0.0676754151219443 0.946044020322756 1 FALSE HaemophilusHaemophilus parainfluenzae (SP83) 0.836459625990626 0.55248562799126 1.51399345722683 0.130027498924468 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP84) 0.472326234717735 0.360602139651036 1.30982648958993 0.190254539709305 1 FALSE CardiobacteriumCardiobacterium hominis (SP86) 0.147946083007934 0.333232300397652 0.443972816654889 0.657062237327589 1 FALSE CampylobacterCampylobacter concisus (SP88) -0.677828912678299 0.38840620144034 -1.7451547121665 0.080957942015769 1 FALSE StreptococcusStreptococcus oralis (SP89) -0.0205585198680361 0.526277382759353 -0.0390640383598561 0.968839332303317 1 FALSE PorphyromonasPorphyromonas pasteri (SP9) 0.139632933579433 0.360114948241132 0.387745452560151 0.698204415871724 1 FALSE MogibacteriumMogibacterium neglectum (SP92) -0.0576610332588029 0.309573156935955 -0.186259796648751 0.852241033347065 1 FALSE RothiaRothia dentocariosa (SP93) -0.433400937710064 0.570320912681148 -0.759924681128373 0.447299607628475 1 FALSE MegasphaeraMegasphaera micronuciformis (SP95) 0.20881863373394 0.344736417284758 0.605734187814142 0.544691277978187 1 FALSE AlloprevotellaAlloprevotella rava (SP96) 0.231712229547303 0.336896909097165 0.687783779816379 0.491588951936219 1 FALSE PrevotellaPrevotella sp._HMT_317 (SP97) 0.179765502859566 0.392787425832906 0.457666134495963 0.647192321871361 1 FALSE ActinomycesActinomyces sp._HMT_525 (SP98) -0.598438354362831 0.457563434760792 -1.3078806322793 0.190913799629941 1 FALSE SchaaliaSchaalia sp._HMT_178 (SP99) 0.0078619979924559 0.369165645026994 0.0212966674942925 0.98300900219177 1 FALSE ActinomycesActinomyces naeslundii_nov_97.422% (SPN109) 0.0837542076451055 0.425018278885335 0.197060248478634 0.843780390539374 1 FALSE ActinomycesActinomyces sp._HMT_175_nov_97.633% (SPN133) -0.208319137455475 0.373573505529061 -0.557638950226006 0.577090953494189 1 FALSE StreptococcusStreptococcus sanguinis_nov_97.727% (SPN14) -0.0408207387591024 0.370250824608526 -0.11025158094452 0.912209855892471 1 FALSE ActinomycesActinomyces viscosus_nov_95.849% (SPN249) 0.163206999465868 0.415116275292057 0.393159722179148 0.694201516302058 1 FALSE ActinomycesActinomyces viscosus_nov_95.841% (SPN469) -0.0226304671539033 0.334264122110867 -0.0677023516942013 0.946022577227768 1 FALSE PrevotellaPrevotella veroralis_nov_96.402% (SPN611) 0.202202379644339 0.281870465177685 0.71735922923629 0.473152469596876 1 FALSE VeillonellaVeillonella dispar_parvula (SPP45) -0.323181273684873 0.497741267843161 -0.649295717603041 0.5161472532144 1 FALSE