Comp2Smoker 24 Weeks P1...1 Comp2Smoker 24 Weeks P1...2 Comp2Smoker 24 Weeks P1...3 Comp2Smoker 24 Weeks P1...4 Comp2Smoker 24 Weeks P1...5 Comp2Smoker 24 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Streptococcus mitis (SP1) -0.182111793127142 0.585371487055807 -0.311104652608028 0.755721064273456 1 FALSE Corynebacterium durum (SP10) 0.310091506631487 0.430885591425576 0.719660886328447 0.471733814188694 1 FALSE Actinomyces sp._HMT_175 (SP100) 0.203246668263706 0.549963293444911 0.369564061249598 0.711707333083646 1 FALSE Lachnoanaerobaculum saburreum (SP101) 0.489158633427125 0.422104749733798 1.15885602740935 0.24651487534842 1 FALSE Prevotella intermedia (SP104) -0.159633974783795 0.43838843206803 -0.36413820052401 0.715754812235127 1 FALSE Neisseria elongata (SP105) 0.603400855921541 0.355504916902266 1.69730663974874 0.0896387025927104 1 FALSE Solobacterium moorei (SP106) -0.163122319867595 0.359979440046399 -0.453143434654405 0.650445460748266 1 FALSE Prevotella maculosa (SP107) -0.0883374654072469 0.308069958223815 -0.286744822236347 0.77430771484682 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP109) 0.637333262692096 0.418244493951996 1.52382941534969 0.127551329429892 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) -0.000849203779173385 0.493173393024927 -0.00172191726314494 0.998626109479687 1 FALSE Streptococcus salivarius (SP115) -0.512874274482324 0.554007068118124 -0.925754027334847 0.354573823504041 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) 0.0976924715279171 0.315543401136534 0.309600743276663 0.756864590994922 1 FALSE Leptotrichia hongkongensis (SP119) -0.0521038893759641 0.492497651442838 -0.105795203740198 0.915744842295007 1 FALSE Selenomonas sputigena (SP12) -0.102487297235968 0.448821483436585 -0.228347574744489 0.819376042058726 1 FALSE Fretibacterium sp._HMT_359 (SP120) 0.316303043766465 0.324044884072389 0.976108740836671 0.329010580258344 1 FALSE Peptidiphaga gingivicola (SP121) -0.202499716044429 0.4624534756034 -0.437881271797583 0.661472352447315 1 FALSE Olsenella sp._HMT_807 (SP124) 0.440730199968175 0.55794803535949 0.789912629917604 0.42957879487673 1 FALSE Selenomonas noxia (SP128) 0.340144880190312 0.421189477277494 0.807581619533703 0.419331471293218 1 FALSE Capnocytophaga leadbetteri (SP129) 0.631959183825229 0.427606058106282 1.47790044562033 0.139434427046028 1 FALSE Parvimonas micra (SP13) 0.0450405573921341 0.486431905768836 0.0925937564086069 0.926226304103513 1 FALSE Gemella haemolysans (SP131) -0.584400972387952 0.373121316205685 -1.56624922513351 0.117290282745478 1 FALSE Dialister invisus (SP134) 0.522192368694672 0.476182124165086 1.09662320821106 0.272806137879291 1 FALSE Actinomyces sp._HMT_170 (SP136) 0.457239607311299 0.505630823997158 0.904295358611026 0.365838807246196 1 FALSE Leptotrichia wadei (SP137) -0.101940245236283 0.541323131692016 -0.188316809809416 0.850628308771575 1 FALSE Treponema sp._HMT_237 (SP140) -0.0379497876982605 0.308227123410538 -0.123122803984106 0.902009853698002 1 FALSE Bergeyella sp._HMT_322 (SP141) -0.11689374498792 0.436433955387484 -0.267838337381739 0.788823759504194 1 FALSE Gemella morbillorum (SP142) 0.00699226995666427 0.43773879372133 0.0159736127045565 0.987255443020768 1 FALSE Leptotrichia sp._HMT_417 (SP143) -0.157608603295101 0.339445371919932 -0.464312128940375 0.642424135379165 1 FALSE Stomatobaculum longum (SP145) -0.22146163648734 0.391647145559505 -0.565462148769044 0.571759462776939 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) 0.262175813598638 0.362148369933654 0.723945861323824 0.469098972915466 1 FALSE Prevotella salivae (SP147) -0.0263779688705737 0.336654266792052 -0.0783532884401761 0.937547029666256 1 FALSE Neisseria mucosa (SP149) -0.113240562921659 0.32300486512532 -0.350584697471115 0.725899938406237 1 FALSE Campylobacter showae (SP151) 0.517010450551208 0.363638105966963 1.4217719267248 0.155092471818544 1 FALSE Porphyromonas endodontalis (SP156) 0.302601686307279 0.455471700571389 0.664369895929135 0.506453595463678 1 FALSE Scardovia wiggsiae (SP158) -0.386821158684727 0.558094230513938 -0.69311083601153 0.488239997919984 1 FALSE Capnocytophaga endodontalis (SP159) 0.176464436312455 0.382408726770545 0.461455045241 0.644472167091457 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_145 (SP163) -0.203035891269356 0.294778256618558 -0.688774991746027 0.490964875574664 1 FALSE Streptococcus intermedius (SP167) 0.728865042460275 0.518268908325071 1.40634529826573 0.159621615169338 1 FALSE Mycoplasma faucium (SP169) 0.0162850042899661 0.306551933628456 0.0531231497945915 0.957633786624109 1 FALSE Fusobacterium nucleatum (SP17) 0.845127294034374 0.398901575344326 2.1186361405188 0.0341212289889017 1 FALSE Treponema sp._HMT_257 (SP170) -0.251775938043446 0.303460281611076 -0.82968333353796 0.406717846906935 1 FALSE Lachnoanaerobaculum orale (SP174) -0.694432773914604 0.311716311672619 -2.22777168826486 0.0258957437187114 1 FALSE Actinomyces sp._HMT_897 (SP175) 0.159162143396045 0.428367373618901 0.371555242527981 0.710224018233458 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) -0.143088974413055 0.459786935197072 -0.31120713412991 0.7556431598948 1 FALSE Capnocytophaga granulosa (SP177) 0.716995593402159 0.299553887581957 2.3935446112546 0 0 TRUE Catonella morbi (SP18) 0.237204899306386 0.374235011591739 0.63383941095591 0.526185630115836 1 FALSE Leptotrichia sp._HMT_215 (SP184) -0.101158776624083 0.318082458340961 -0.318026895138143 0.750464535828056 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) -0.0157876186521475 0.316299605705317 -0.0499134945708917 0.96019132359578 1 FALSE Prevotella veroralis (SP19) -0.0245341618931972 0.322386892009025 -0.0761016111427706 0.939338258353572 1 FALSE Prevotella pleuritidis (SP193) 0.150357255013579 0.431569695073687 0.348396230620195 0.727542632954078 1 FALSE Lautropia mirabilis (SP194) 0.832778368275281 0.471885138472449 1.7647904127074 0.0775989965388394 1 FALSE Granulicatella adiacens (SP20) 0.515902126030796 0.539348550325669 0.956528251942615 0.338805417911952 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) -0.241366895203324 0.301642887150777 -0.800174330259199 0.423609800203238 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) -0.542580225119931 0.450365064076556 -1.20475647069219 0.228297328725912 1 FALSE Slackia exigua (SP211) 0.1322249588156 0.316080614210999 0.418326695376937 0.675708274204845 1 FALSE Bulleidia extructa (SP212) -0.0046243338453664 0.299381548879298 -0.015446288733147 0.987676134754123 1 FALSE Streptococcus cristatus (SP214) -0.240648576706227 0.559092857145434 -0.430426848833142 0.666885168242259 1 FALSE Neisseria sicca (SP215) -0.073368968292941 0.390992944911884 -0.187647806047948 0.851152748043298 1 FALSE Peptococcus sp._HMT_167 (SP218) 0.0760568868103679 0.362798943372517 0.209639218084143 0.83394926812076 1 FALSE Tannerella sp._HMT_808 (SP22) -0.462172148282251 0.32410662973778 -1.42598794926279 0.153871820570212 1 FALSE Oribacterium sp._HMT_078 (SP220) 0.593887273624938 0.448674501003087 1.32364837381488 0.185619851602472 1 FALSE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP222) 0.141116442296182 0.278178410544058 0.507287542624848 0.61195307804335 1 FALSE Fretibacterium sp._HMT_360 (SP223) -0.277965082409563 0.354554699635901 -0.783983635515226 0.433049712586077 1 FALSE Peptostreptococcus stomatis (SP226) -0.115763726632889 0.340663705103093 -0.339818198706715 0.733993442044626 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) -0.660973261152641 0.54264615815133 -1.21805572788799 0.223202796216746 1 FALSE Treponema sp._HMT_231 (SP231) 0.575373470509639 0.350685741732449 1.64070962128997 0.100857706769605 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP232) 0.119889574815617 0.445140837111977 0.269329535329642 0.787676105703861 1 FALSE Pseudoramibacter alactolyticus (SP233) 0.0217730648543162 0.287197239642275 0.0758122358050382 0.939568481377586 1 FALSE Capnocytophaga sputigena (SP24) 0.175132253918049 0.363975266343409 0.481165260698821 0.630399048733178 1 FALSE Filifactor alocis (SP245) -0.0928635221848291 0.34555692126845 -0.268735818816626 0.788132985942963 1 FALSE Phocaeicola abscessus (SP252) 0.257783042886034 0.263867659639787 0.976940649861906 0.328598535699565 1 FALSE Kingella oralis (SP253) 0.437268858986282 0.494039149183781 0.885089490799887 0.376108367050944 1 FALSE Actinomyces israelii (SP256) -0.023134999557629 0.525997444315303 -0.0439831025942419 0.964917873008644 1 FALSE Arachnia propionica (SP258) -0.111028050104178 0.400269718916931 -0.277383086596215 0.781485967238071 1 FALSE Shuttleworthia satelles (SP260) -0.249781975465852 0.3508023580271 -0.71203049167234 0.476445894581678 1 FALSE Actinomyces sp._HMT_448 (SP264) -0.769959234002051 0.72948490650302 -1.05548343377391 0.291204282145956 1 FALSE Rothia aeria (SP269) 0.383961889551345 0.502832251833581 0.763598373316798 0.445106618961974 1 FALSE Aggregatibacter sp._HMT_458 (SP27) -0.297030309539511 0.371106658236214 -0.800390677308861 0.42348448070861 1 FALSE Schaalia sp._HMT_180 (SP275) -0.399664441263168 0.480312924737915 -0.832091789912268 0.405357135663568 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) 0.349664666815143 0.462434907234014 0.756138131756988 0.449566381763551 1 FALSE Actinomyces naeslundii (SP3) -0.0379527457873963 0.421119636090618 -0.0901234293886725 0.928189131018269 1 FALSE Prevotella melaninogenica (SP30) -0.0326763987907847 0.373136084884104 -0.0875723365134574 0.930216589949723 1 FALSE Actinomyces oris (SP31) -0.490358624037705 0.617064166741812 -0.79466391092983 0.426809030611061 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP316) 0.261074348421354 0.262459453306118 0.994722594795819 0.319871202081298 1 FALSE Mogibacterium timidum (SP319) 0.156175866057407 0.366214293416411 0.426460323545658 0.669772453281714 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) -0.0589363065156217 0.318981766430351 -0.184763872791739 0.85341424526605 1 FALSE Lancefieldella parvula (SP338) 0.3297374083166 0.501960609753807 0.656898971571343 0.511245879554088 1 FALSE Streptococcus gordonii (SP34) 0.437478918103734 0.549348353055059 0.796359751823789 0.425822964831571 1 FALSE Lancefieldella rimae (SP341) 0.286076035751177 0.508290288717696 0.562820187796394 0.573557332099905 1 FALSE Fretibacterium fastidiosum (SP345) 0.221955152231145 0.392069418563883 0.566111871321533 0.571317733766955 1 FALSE Corynebacterium matruchotii (SP35) -0.0637721470327083 0.548745585339271 -0.11621441472423 0.907482612863404 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) -0.313795971062033 0.296805881256228 -1.05724310358641 0.290400652560432 1 FALSE Prevotella sp._HMT_300 (SP36) -0.102875687069355 0.408416902271655 -0.251888906891831 0.801126934211845 1 FALSE Actinomyces massiliensis (SP360) 0.346392549402776 0.44727341549772 0.774453695213061 0.438662540910195 1 FALSE Actinomyces viscosus (SP366) -0.138258005194312 0.397625292108785 -0.347709282930842 0.728058524424674 1 FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) -0.623590081752175 0.282176535091167 -2.20992890691886 0.0271100966737973 1 FALSE Streptococcus parasanguinis_clade_411 (SP4) -0.499301081086126 0.629201602617373 -0.793547058699655 0.427459163226785 1 FALSE Streptococcus sanguinis (SP40) 0.68349206665602 0.647604868977836 1.055415268472 0.29123544284475 1 FALSE Actinomyces sp._HMT_414 (SP407) -0.577970321780401 0.324311261685518 -1.78214693740995 0.0747252732511474 1 FALSE Streptococcus mutans (SP41) -0.350091781702148 0.678623256119765 -0.515885328928902 0.605934501381955 1 FALSE Prevotella oralis (SP417) -0.0404192825562005 0.342540525750855 -0.117998541829761 0.906068813263117 1 FALSE Prevotella oris (SP42) 0.539586148120154 0.505510400780682 1.06740859789798 0.285787367632875 1 FALSE Peptidiphaga sp._HMT_183 (SP428) -0.000954301740868108 0.493102895963018 -0.00193529940440601 0.998455855448596 1 FALSE Schaalia meyeri (SP43) -0.378832678585281 0.456304971451754 -0.830218170492442 0.40641544363603 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 0.564623377105368 0.453517108325624 1.24498804287659 0.213136145513271 1 FALSE Bifidobacterium dentium (SP46) -0.620640395657676 0.41925641067327 -1.4803360899384 0.138783576445602 1 FALSE Olsenella uli (SP464) -0.0835960231943 0.333192562240963 -0.250894025461 0.801896043701896 1 FALSE Actinomyces dentalis (SP47) -0.252533525924841 0.534444483406301 -0.472515918426755 0.636558582239624 1 FALSE Eikenella corrodens (SP48) 0.682198641906296 0.368038773754457 1.85360535507445 0.0637956409157196 1 FALSE Prevotella denticola (SP49) 0.102328337740705 0.523745297679708 0.195378055314367 0.845096994880371 1 FALSE Streptococcus sp._HMT_064 (SP5) 0.573119161545298 0.468398793696015 1.22357095974343 0.221114120260736 1 FALSE Treponema socranskii (SP51) 0.278985854808737 0.453939437475957 0.614588272744013 0.538826661079528 1 FALSE Schaalia odontolytica (SP52) -0.162740830047195 0.422813550142097 -0.384899750711637 0.700311690604078 1 FALSE Actinomyces sp._HMT_169 (SP53) 0.0494412713583062 0.636848334567736 0.0776342948150516 0.938118961379352 1 FALSE Treponema denticola (SP54) -0.0283968029815688 0.33245044306805 -0.0854166495297953 0.931930157125144 1 FALSE Prevotella oulorum (SP57) -0.332366173704013 0.364643734667032 -0.911481926345194 0.362041504288513 1 FALSE Rothia mucilaginosa (SP59) -0.194695270263673 0.475245762865668 -0.409672816627942 0.682045973361407 1 FALSE Capnocytophaga gingivalis (SP6) 0.331459564901303 0.430436741926296 0.770054069775622 0.441267819729272 1 FALSE Alloprevotella tannerae (SP63) -0.251241886287786 0.476679117836882 -0.527067112626821 0.598146983902897 1 FALSE Tannerella forsythia (SP64) -0.00661139158087995 0.41717627158142 -0.0158479569219449 0.987355689140014 1 FALSE Veillonella atypica (SP65) 0.308074367543919 0.38797603815185 0.794055140651086 0.427163331350707 1 FALSE Porphyromonas gingivalis (SP67) -0.563517793409935 0.409150516487576 -1.37728725909368 0.168423452787079 1 FALSE Streptococcus constellatus (SP68) 0.287155464438048 0.344199758862233 0.834269801313205 0.40412896508598 1 FALSE Streptococcus anginosus (SP69) -0.355733398792691 0.519327730065185 -0.684988261166104 0.493351328544163 1 FALSE Prevotella sp._HMT_314 (SP70) -0.333680707612115 0.306997656359547 -1.08691613991124 0.277073872707357 1 FALSE Actinomyces sp._HMT_171 (SP74) 0.235097219778236 0.556475184299062 0.422475658235084 0.672677864363777 1 FALSE Campylobacter gracilis (SP78) 1.13002403972877 0.431218898624977 2.62053459004711 0.00877920234090367 1 FALSE Veillonella parvula (SP8) -0.678457285413184 0.54033237020081 -1.25562953994602 0.209250316131351 1 FALSE Parvimonas sp._HMT_110 (SP80) 0.327496766172713 0.348609432137215 0.939437479258475 0.347506177806713 1 FALSE Selenomonas artemidis (SP81) -0.0751756353004543 0.3448482682291 -0.217996267420752 0.827432019661215 1 FALSE Haemophilus parainfluenzae (SP83) 1.29367264094851 0.610081931921756 2.12049000840502 0.0339647432596421 1 FALSE Anaeroglobus geminatus (SP84) 0.253297295554175 0.355837846833509 0.711833487663525 0.476567893129974 1 FALSE Cardiobacterium hominis (SP86) 0.211933237205347 0.356886648757125 0.593839074516837 0.552619751632355 1 FALSE Campylobacter concisus (SP88) -0.556854424368139 0.415193045472159 -1.341194007079 0.179857471623241 1 FALSE Streptococcus oralis (SP89) 0.365740637022126 0.576968714590103 0.633900292638847 0.526145894595382 1 FALSE Porphyromonas pasteri (SP9) 0.120322200682316 0.329960582469984 0.364656286461919 0.715367993153679 1 FALSE Prevotella loescheii (SP91) 0.160717742453518 0.34026519947099 0.472330825201595 0.636690671293153 1 FALSE Mogibacterium neglectum (SP92) -0.174972866505623 0.33142057454329 -0.527948111690839 0.597535350525113 1 FALSE Rothia dentocariosa (SP93) -0.194108389018053 0.580952669579685 -0.334120831493018 0.73828838123534 1 FALSE Megasphaera micronuciformis (SP95) -0.298416330145791 0.30842546820233 -0.967547627908688 0.333270343852414 1 FALSE Alloprevotella rava (SP96) 0.0167516356451029 0.346485288808117 0.0483473214771318 0.961439441538386 1 FALSE Prevotella sp._HMT_317 (SP97) 0.00491210834293415 0.425676456408349 0.0115395349425245 0.990792987566594 1 FALSE Actinomyces sp._HMT_525 (SP98) -0.383264943009131 0.490588814388376 -0.781234573166844 0.434664542943868 1 FALSE Schaalia sp._HMT_178 (SP99) -0.495464223916335 0.362478505135986 -1.36687890977275 0.171663263607794 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) -0.00722121388228159 0.502897288519839 -0.0143592221456106 0.988543392047333 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.724154387154843 0.389411543879433 -1.85961201853597 0.0629404376939865 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) -0.170739924793894 0.423803378924939 -0.402875326824929 0.687039943071734 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.259558321030676 0.405930486591308 -0.639415687178974 0.522552546499299 1 FALSE Actinomyces viscosus_nov_95.841% (SPN469) 0.0752547625984007 0.395534118813946 0.190261115334527 0.849104522513804 1 FALSE Actinomyces israelii_nov_97.037% (SPN579) -0.416922058491053 0.39004960237702 -1.06889497117871 0.285116998211919 1 FALSE Veillonella dispar_parvula (SPP45) 0.260574678381743 0.469551870835264 0.554943329089966 0.578933423705206 1 FALSE