Comp9Smoker 24 Weeks P1...1 Comp9Smoker 24 Weeks P1...2 Comp9Smoker 24 Weeks P1...3 Comp9Smoker 24 Weeks P1...4 Comp9Smoker 24 Weeks P1...5 Comp9Smoker 24 Weeks P1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Streptococcus mitis (SP1) 0.468056445092592 0.608109247238815 0.769691379004434 0.441482985173545 1 FALSE Corynebacterium durum (SP10) 0.30926134151281 0.435731806933327 0.709751587081481 0.47785819572452 1 FALSE Actinomyces sp._HMT_175 (SP100) 0.122445066412125 0.558591053294501 0.219203414895314 0.826491595470087 1 FALSE Lachnoanaerobaculum saburreum (SP101) -0.00969672146808315 0.448114621628179 -0.0216389312021355 0.982735978185937 1 FALSE Prevotella intermedia (SP104) -0.128882166662759 0.472284284813502 -0.272891076004472 0.784936946581003 1 FALSE Neisseria elongata (SP105) 0.213532272628335 0.41770504111332 0.511203484782473 0.609208578805583 1 FALSE Solobacterium moorei (SP106) 0.433333129768977 0.328707935194052 1.31829226913296 0.187405827907226 1 FALSE Prevotella maculosa (SP107) -0.16030764265019 0.336182690661146 -0.47684680711825 0.633471212210218 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP109) 0.517296444646826 0.472009543475337 1.09594488458443 0.273102894930752 1 FALSE Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) 0.465389191127295 0.486679063201039 0.956254801811868 0.338943518944704 1 FALSE Streptococcus salivarius (SP115) 0.336828010971589 0.489010253288517 0.688795395815269 0.490952033453563 1 FALSE Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) 0.157811868089966 0.339822610216133 0.464394844091141 0.642364883389891 1 FALSE Leptotrichia hongkongensis (SP119) -0.167372062725144 0.504093661527731 -0.332025723588545 0.73986983517426 1 FALSE Selenomonas sputigena (SP12) -0.282246820618655 0.460989917734196 -0.612262459027135 0.540364123272689 1 FALSE Fretibacterium sp._HMT_359 (SP120) 0.503284302681479 0.303263321183834 1.65956206216048 0.097002585715886 1 FALSE Peptidiphaga gingivicola (SP121) 0.0727258201206493 0.448198650583976 0.162262470058515 0.871099167527678 1 FALSE Olsenella sp._HMT_807 (SP124) 1.4026752543985 0.524236162032753 2.67565527902454 0.0074583314503285 1 FALSE Selenomonas noxia (SP128) 0.467414180932456 0.439731675260799 1.06295317628697 0.28780318608317 1 FALSE Capnocytophaga leadbetteri (SP129) -0.0366279865865398 0.479803638824122 -0.0763395348070011 0.939148973367757 1 FALSE Parvimonas micra (SP13) -0.00933279080216692 0.494526791759156 -0.0188721641732854 0.984943085357395 1 FALSE Capnocytophaga sp._HMT_864 (SP130) -0.372989127475156 0.291790351436667 -1.27827779650251 0.201151493816619 1 FALSE Gemella haemolysans (SP131) -0.0541979583668456 0.312378600873029 -0.173500867906362 0.862257745736618 1 FALSE Dialister invisus (SP134) 0.13256792569492 0.503407955320544 0.263340943053846 0.792287805006409 1 FALSE Actinomyces sp._HMT_170 (SP136) 0.702272318586696 0.500892569322227 1.40204179817832 0.160902765412934 1 FALSE Leptotrichia wadei (SP137) 0.229948207566773 0.546893340892859 0.420462621086881 0.674147530109826 1 FALSE Treponema sp._HMT_237 (SP140) -0.38397079276006 0.350805020166768 -1.09454189845267 0.273717381956785 1 FALSE Bergeyella sp._HMT_322 (SP141) -0.122123771873621 0.444422877053994 -0.274791821436284 0.783476181859636 1 FALSE Gemella morbillorum (SP142) -0.014105042300703 0.449425680359241 -0.031384593531523 0.97496282768029 1 FALSE Leptotrichia sp._HMT_417 (SP143) -0.14102647842923 0.353255680932724 -0.399219279522607 0.689731638597628 1 FALSE Stomatobaculum longum (SP145) -0.624037684907937 0.431616377536455 -1.4458155838983 0.148228933922024 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) 0.664081361813494 0.353473935142637 1.87872795074838 0.060281649281257 1 FALSE Prevotella salivae (SP147) -0.428574894649516 0.394378224277903 -1.08671034115595 0.277164842355411 1 FALSE Alloprevotella sp._HMT_473 (SP15) -0.226079803774174 0.378555983327372 -0.597216300181055 0.550362977788962 1 FALSE Campylobacter showae (SP151) -0.070805395485564 0.434173680503173 -0.163080809973341 0.870454808940814 1 FALSE Porphyromonas endodontalis (SP156) -0.0394455892523921 0.493343916456566 -0.0799555602827929 0.936272600515592 1 FALSE Scardovia wiggsiae (SP158) -0.245278151076112 0.580311717794652 -0.422666204308673 0.67253881631173 1 FALSE Capnocytophaga endodontalis (SP159) 0.26521868773692 0.382090569014322 0.694125187180369 0.487603704317048 1 FALSE Streptococcus intermedius (SP167) 0.150929092741599 0.575208793595146 0.26239009977276 0.793020704610156 1 FALSE Mycoplasma faucium (SP169) -0.147292870255239 0.342610972640376 -0.429912880840059 0.66725901522451 1 FALSE Fusobacterium nucleatum (SP17) -0.361008665444225 0.267638523866312 -1.34886659898241 0.177379818329526 1 FALSE Treponema sp._HMT_257 (SP170) -0.0453698050113156 0.291329566225554 -0.155733609873943 0.876243003530991 1 FALSE Actinomyces sp._HMT_897 (SP175) 0.0864580653591802 0.430002058555008 0.201064305714527 0.840648291915445 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) 0.144105976622681 0.453379577261921 0.317848407493286 0.750599929395756 1 FALSE Capnocytophaga granulosa (SP177) 0.585849220434041 0.333779950216541 1.75519596085376 0.0792257945677569 1 FALSE Bacteroidetes_[G-5] bacterium_HMT_511 (SP178) -0.00636814343203984 0.313755845489843 -0.0202964933516944 0.983806853111991 1 FALSE Catonella morbi (SP18) -0.349942693062795 0.436675094267365 -0.801380013783279 0.422911681946261 1 FALSE Leptotrichia sp._HMT_215 (SP184) -0.345884359065534 0.346216107097756 -0.999041789144348 0.317774447982635 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) 0.0767599761960878 0.311257178824032 0.246612709419575 0.805207967606564 1 FALSE Bacteroidetes_[G-3] bacterium_HMT_365 (SP188) 0.0167571536895768 0.249688346780108 0.0671122777881751 0.94649231967194 1 FALSE Prevotella veroralis (SP19) -0.579889011407886 0.379761337580086 -1.5269827494896 0.12676530099529 1 FALSE Prevotella pleuritidis (SP193) 0.0144237767251365 0.466228437741565 0.0309371448790341 0.975319666761493 1 FALSE Lautropia mirabilis (SP194) -0.230198417670013 0.557455085666401 -0.412945228394187 0.67964674306305 1 FALSE Granulicatella adiacens (SP20) 0.797768497438109 0.517564161955484 1.5413905290968 0.123221767665479 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) -0.00567108753574505 0.303866600076668 -0.0186630828604203 0.985109878731703 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) 0.0420395779003111 0.429268170731011 0.0979331354307515 0.92198538817657 1 FALSE Bulleidia extructa (SP212) 0.131267840557214 0.305635239129307 0.429491837823315 0.667565332553827 1 FALSE Streptococcus cristatus (SP214) 0.0179591425501337 0.567280201573718 0.0316583277546306 0.974744527849161 1 FALSE Neisseria sicca (SP215) -0.190922325623367 0.426594217229165 -0.447550196210945 0.654477853475189 1 FALSE Peptococcus sp._HMT_167 (SP218) -0.291856363054467 0.386577127765031 -0.754975765746448 0.450263523221578 1 FALSE Tannerella sp._HMT_808 (SP22) -0.0898249773195501 0.306926146057742 -0.292659906864537 0.769782118369905 1 FALSE Oribacterium sp._HMT_078 (SP220) -0.0503641272213925 0.482303839166608 -0.104424064524178 0.916832826347979 1 FALSE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP222) 0.158264384649181 0.299222213374674 0.52891923652409 0.596861476918106 1 FALSE Fretibacterium sp._HMT_360 (SP223) 0.0776141928368396 0.34171629007142 0.227130502969636 0.82032226586433 1 FALSE Peptostreptococcus stomatis (SP226) -0.290696290664604 0.381293944418103 -0.76239419723342 0.445824768501919 1 FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) -0.182153772130094 0.520272588453194 -0.35011218382973 0.726254507503412 1 FALSE Treponema sp._HMT_231 (SP231) 0.694384994402726 0.343030942096113 2.02426343862639 0.0429430533526192 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP232) 0.145860042951559 0.490012803184038 0.29766577935062 0.765958264185772 1 FALSE Capnocytophaga sputigena (SP24) -0.0571724444779796 0.402418514576546 -0.142072102567499 0.887023053551261 1 FALSE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP244) -0.55039339252959 0.34882414596927 -1.57785347972465 0.114599274377677 1 FALSE Filifactor alocis (SP245) -0.230807997085551 0.37537546611636 -0.614872355600365 0.538639020577486 1 FALSE Selenomonas sp._HMT_138 (SP246) -0.0619122156090457 0.299221541346112 -0.206910957448185 0.836079398888267 1 FALSE Kingella oralis (SP253) 0.258372848650965 0.516872750413403 0.499877094399568 0.617161621711677 1 FALSE Actinomyces israelii (SP256) 0.239593586159453 0.526979577578605 0.454654404750087 0.649357888029918 1 FALSE Arachnia propionica (SP258) 0.193709517315523 0.369900232850894 0.523680441676302 0.600500821266106 1 FALSE Shuttleworthia satelles (SP260) -0.118040695434346 0.363558578962134 -0.324681364338372 0.745422240283477 1 FALSE Actinomyces sp._HMT_448 (SP264) 0.442833922140401 0.678420718317802 0.652742332572688 0.513922406417725 1 FALSE Rothia aeria (SP269) 0.351552532486395 0.491525250511426 0.715227818144865 0.474468282423474 1 FALSE Aggregatibacter sp._HMT_458 (SP27) -0.0634867991216212 0.351902839912649 -0.180410022088427 0.856830686928458 1 FALSE Schaalia sp._HMT_180 (SP275) -0.0728205476318011 0.486673228877971 -0.149629244657014 0.881057134025968 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) 0.811204274001419 0.453128137941716 1.7902315174825 0.0734167003077743 1 FALSE Tannerella sp._HMT_286 (SP28) -0.448816632509704 0.310125944689859 -1.44720762707726 0.147838781033979 1 FALSE Actinomyces naeslundii (SP3) -0.212343105088545 0.451051117381269 -0.470773925406448 0.637802186661084 1 FALSE Prevotella melaninogenica (SP30) -0.401803703910648 0.428991890888302 -0.936623074806016 0.348952478259887 1 FALSE Actinomyces oris (SP31) -0.212084425348574 0.588384533009693 -0.360452074196655 0.718509090410894 1 FALSE Mogibacterium timidum (SP319) -0.122552770008535 0.402656601719197 -0.304360513363694 0.760853247392864 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) -0.41286841901468 0.35374831353389 -1.16712476984042 0.243159986124865 1 FALSE Lancefieldella parvula (SP338) 0.648049856038472 0.506059993245992 1.2805791105551 0.200341541182111 1 FALSE Streptococcus gordonii (SP34) 0.798349936731155 0.575803752736434 1.38649658488174 0.165595322370927 1 FALSE Lancefieldella rimae (SP341) 0.118738281592594 0.518827974988638 0.228858672463054 0.818978762685153 1 FALSE Fretibacterium fastidiosum (SP345) 0.100751432653865 0.411102657599781 0.245076091801744 0.806397514495616 1 FALSE Corynebacterium matruchotii (SP35) 1.0930810837838 0.570490612981986 1.9160369319141 0.0553603949434922 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) -0.537737425607282 0.326886317031453 -1.64502886046325 0.099963859567971 1 FALSE Prevotella sp._HMT_300 (SP36) -0.258732799421576 0.426463977134126 -0.606693210433111 0.544054528840757 1 FALSE Actinomyces massiliensis (SP360) 0.452710821004636 0.4292208285541 1.05472705630262 0.291550173826223 1 FALSE Actinomyces viscosus (SP366) -0.0559603115691537 0.387345950190981 -0.144471141473307 0.885128443130157 1 FALSE Aggregatibacter aphrophilus (SP37) -0.716366351215811 0.375151766998722 -1.90953745719196 0.0561927944835054 1 FALSE Streptococcus parasanguinis_clade_411 (SP4) 0.0376670309628584 0.603109838857348 0.0624546782957851 0.950200752921693 1 FALSE Streptococcus sanguinis (SP40) 0.00568207178590502 0.643766749796797 0.00882628962694726 0.992957731213703 1 FALSE Streptococcus mutans (SP41) 0.421521270993507 0.661119017033471 0.637587575206849 0.523742185765369 1 FALSE Prevotella oralis (SP417) 0.0769462464396581 0.330026680768467 0.233151593260547 0.815643692998835 1 FALSE Prevotella oris (SP42) 0.671337744006708 0.53144866784194 1.26322217860253 0.206509344444259 1 FALSE Peptidiphaga sp._HMT_183 (SP428) 0.632642416512394 0.43475364338125 1.45517450202852 0.145620957924021 1 FALSE Schaalia meyeri (SP43) 0.377064773597306 0.393736041246845 0.957658771605603 0.338234852778136 1 FALSE Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 0.0697558042521868 0.480799026611517 0.145083081269524 0.884645276138862 1 FALSE Bifidobacterium dentium (SP46) -0.119417255095962 0.381846937158554 -0.312735924987599 0.754481299422564 1 FALSE Actinomyces dentalis (SP47) 0.0474666045550496 0.531342988740463 0.0893332660087754 0.928817057296003 1 FALSE Eikenella corrodens (SP48) 0.463672599336753 0.402499657811919 1.15198259262476 0.249328226534672 1 FALSE Prevotella denticola (SP49) -0.698062189090003 0.553609627404105 -1.26092855784182 0.207334588052842 1 FALSE Streptococcus sp._HMT_064 (SP5) 0.64571526503105 0.460117755836194 1.40336958711267 0.160506657187379 1 FALSE Treponema socranskii (SP51) 0.574864585768134 0.459766126188025 1.25034132143315 0.211174889835519 1 FALSE Schaalia odontolytica (SP52) 0.0600922946656551 0.394587472712626 0.152291440608961 0.878957075583014 1 FALSE Actinomyces sp._HMT_169 (SP53) 0.373564260058574 0.637992239509607 0.585531040856727 0.558190701071894 1 FALSE Treponema denticola (SP54) -0.252559648800813 0.369243577167851 -0.683991989076641 0.493980224393814 1 FALSE Prevotella oulorum (SP57) -0.777625534757664 0.410566439869065 -1.89403092713973 0.0582209049119051 1 FALSE Rothia mucilaginosa (SP59) -0.00722347902466225 0.435296092095939 -0.0165944035699502 0.986760189249042 1 FALSE Capnocytophaga gingivalis (SP6) -0.0997199866460664 0.465854338154319 -0.214058297795723 0.83050159554924 1 FALSE Alloprevotella tannerae (SP63) -0.0574108375458593 0.469288877996186 -0.122335815395834 0.902633068426683 1 FALSE Tannerella forsythia (SP64) 0.390325853941387 0.41731725925245 0.9353216175161 0.349622577908145 1 FALSE Veillonella atypica (SP65) 0.144633694564099 0.413219822416796 0.350016351389391 0.726326426281821 1 FALSE Streptococcus constellatus (SP68) 0.0251006153194233 0.392603945510882 0.0639336807651303 0.94902303375579 1 FALSE Streptococcus anginosus (SP69) 0.202655770297912 0.51572237527461 0.392955163502461 0.694352597349535 1 FALSE Actinomyces sp._HMT_171 (SP74) 0.272916810687888 0.551698533460126 0.494684676749487 0.62082271962753 1 FALSE Capnocytophaga sp._HMT_380 (SP75) 0.106959027366655 0.316101866367356 0.338368857469361 0.735085239624399 1 FALSE Campylobacter gracilis (SP78) 0.853405457782734 0.461690320777852 1.8484369703591 0.0645391545918012 1 FALSE Veillonella parvula (SP8) 0.136131910732199 0.562362668044185 0.242071386434035 0.808724849239584 1 FALSE Parvimonas sp._HMT_110 (SP80) -0.31597214260034 0.425975715469158 -0.741760929381473 0.458232196542231 1 FALSE Selenomonas artemidis (SP81) -0.129126699664967 0.336128717257208 -0.384158487613418 0.700860984114883 1 FALSE Haemophilus parainfluenzae (SP83) 0.250195040728006 0.650030436446774 0.384897424335441 0.70031341425895 1 FALSE Anaeroglobus geminatus (SP84) -0.230857878558977 0.401590286513624 -0.574859219238474 0.565386512272799 1 FALSE Cardiobacterium hominis (SP86) 0.185139042068125 0.376005218140046 0.492384236005918 0.622447741186841 1 FALSE Campylobacter concisus (SP88) 0.00551627586410258 0.396910995454046 0.0138980172564689 0.988911343577798 1 FALSE Streptococcus oralis (SP89) 0.138406730073922 0.554364372391736 0.249667433491052 0.802844545052581 1 FALSE Porphyromonas pasteri (SP9) -0.312327551937129 0.376302662717549 -0.829990278786733 0.406544279945009 1 FALSE Prevotella loescheii (SP91) -0.294667038387704 0.423650891484437 -0.695542118075605 0.486715625788777 1 FALSE Mogibacterium neglectum (SP92) -0.125441253368438 0.336654920358197 -0.372610782682072 0.709438146466694 1 FALSE Rothia dentocariosa (SP93) 0.355064056367747 0.598174335543721 0.593579555774497 0.552793358297452 1 FALSE Megasphaera micronuciformis (SP95) -0.631686453293609 0.347122537871975 -1.81977942765153 0.0687926018360618 1 FALSE Alloprevotella rava (SP96) -0.103020422394529 0.376710125064325 -0.273473993768918 0.784488880642326 1 FALSE Prevotella sp._HMT_317 (SP97) -0.191350489421908 0.465877867032888 -0.410731015492523 0.681269781790008 1 FALSE Actinomyces sp._HMT_525 (SP98) 0.498960218115018 0.443556595990099 1.12490767272043 0.260628160294119 1 FALSE Schaalia sp._HMT_178 (SP99) -0.545767381601007 0.382242517943214 -1.42780396209635 0.153348292116525 1 FALSE Actinomyces naeslundii_nov_97.422% (SPN109) -0.0385428399578056 0.513436814193886 -0.0750683217336475 0.940160352279089 1 FALSE Actinomyces sp._HMT_175_nov_97.633% (SPN133) -0.484540864970897 0.367760456200697 -1.31754476807172 0.18765608525479 1 FALSE Streptococcus sanguinis_nov_97.727% (SPN14) -0.101604698244088 0.436273681730422 -0.232892109927618 0.815845185371109 1 FALSE Actinomyces viscosus_nov_95.849% (SPN249) -0.452418889170536 0.442984908193375 -1.02129639363028 0.307114034537384 1 FALSE Actinomyces viscosus_nov_95.841% (SPN469) 0.0703375291383156 0.399247426939133 0.176175284779078 0.860156236970008 1 FALSE Veillonella dispar_parvula (SPP45) 0.349013959984246 0.474465520782823 0.735593936116594 0.461977853995163 1 FALSE