GroupFeces Parkinson + Periodontitis...1 GroupFeces Parkinson + Periodontitis...2 GroupFeces Parkinson + Periodontitis...3 GroupFeces Parkinson + Periodontitis...4 GroupFeces Parkinson + Periodontitis...5 GroupFeces Parkinson + Periodontitis...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance RoseburiaRoseburia intestinalis (SP103) -0.253106503532294 1.24999633491099 -0.20248579652861 0.83953696116567 1 FALSE HaemophilusHaemophilus parainfluenzae (SP108) -1.18739519515345 0.683742778870829 -1.73661094763498 0 0 TRUE BacteroidesBacteroides fragilis (SP119) -0.829667959402104 1.04327992297904 -0.795249617219723 0.426468314720035 1 FALSE ButyrivibrioButyrivibrio crossotus (SP126) 1.20494349890147 1.21914743002677 0.988349291664433 0.322981612657692 1 FALSE HoldemanellaHoldemanella biformis (SP160) -1.14074803412604 0.933990931357634 -1.22136949709765 0.22194615090729 1 FALSE BacteroidesBacteroides caccae (SP164) 0.092449523681528 1.25598968093122 0.0736069134047214 0.941323169963204 1 FALSE BlautiaBlautia obeum (SP175) -0.297884405587767 0.996704051591886 -0.298869463921613 0.76503964706224 1 FALSE FusicatenibacterFusicatenibacter saccharivorans (SP185) -0.14550350529853 1.22728602049668 -0.118557127571327 0.905626232953196 1 FALSE AgathobaculumAgathobaculum butyriciproducens (SP193) 1.32325417140683 1.17155114081123 1.12948903834497 0.258691591116008 1 FALSE BarnesiellaBarnesiella intestinihominis (SP207) 0.850561945111911 0.855369117546843 0.994380002344814 0.320037900125255 1 FALSE MegasphaeraMegasphaera elsdenii (SP208) 0.758750557403186 1.16122643738252 0.653404480794856 0.513495550882472 1 FALSE OdoribacterOdoribacter splanchnicus (SP224) -0.596890090001348 0.980142963584885 -0.608982681279694 0.54253591838191 1 FALSE MethanobrevibacterMethanobrevibacter smithii (SP225) -1.67217765386874 1.36757934608397 -1.22272806960486 0.221432421402688 1 FALSE ParabacteroidesParabacteroides distasonis (SP238) 0.475017970225598 0.989168122136256 0.480219650831171 0.631071215236156 1 FALSE RuminococcusRuminococcus callidus (SP24) 0.977013096532313 1.36856138051518 0.713897900702506 0.475290315568886 1 FALSE ParabacteroidesParabacteroides merdae (SP240) 0.631080310335908 1.14225269399674 0.552487478167163 0.580614411188237 1 FALSE AlistipesAlistipes putredinis (SP243) 1.0614902838691 0.865283007012304 1.22675503305476 0.219914676438646 1 FALSE MediterraneibacterMediterraneibacter faecis (SP254) 0.837946241155206 1.26712812914496 0.661295587937614 0.508422770392573 1 FALSE LactobacillusLactobacillus rogosae (SP259) -0.261972491511753 1.25707751124942 -0.208398041622252 0.834918185321958 1 FALSE EubacteriumEubacterium rectale (SP26) 0.526944320855771 1.25392955097302 0.420234390717463 0.674314233766204 1 FALSE RomboutsiaRomboutsia timonensis (SP263) -2.51772115623458 0.902950889058278 -2.78832568497762 0.00529812511591502 0.672861889721208 FALSE CoprococcusCoprococcus eutactus (SP266) -2.12828568563056 1.16401864823345 -1.82839483616564 0.0674903158117762 1 FALSE PrevotellaPrevotella copri (SP27) 0.927976601250491 0.930474795613672 0.997315140211259 0.318611567036659 1 FALSE BilophilaBilophila wadsworthia (SP270) -0.0858254722100171 1.03437416817736 -0.0829733329103214 0.933872743734319 1 FALSE DoreaDorea formicigenerans (SP273) 0.0561184014210641 1.06114395146827 0.0528848148674033 0.957823683444756 1 FALSE BlautiaBlautia luti (SP28) 0.632067834621611 1.23976399784383 0.50982915758232 0.61017115643172 1 FALSE AlistipesAlistipes shahii (SP288) 0.732011263561413 1.15663605551369 0.632879513025652 0.526812327307756 1 FALSE LachnospiraLachnospira eligens (SP29) 0.598235528252874 1.37680330219283 0.434510526885045 0.663917752169082 1 FALSE LacnoclostridiumLacnoclostridium sp._SS3/4 (SP295) 0.0659942365735027 1.12313524369115 0.0587589401581014 0.953144112930012 1 FALSE CoprococcusCoprococcus comes (SP297) -1.03413981549961 0.805006604743063 -1.28463519355804 0.198919794367665 1 FALSE RuminococcusRuminococcus bromii (SP301) -0.538644147698274 1.2068092295073 -0.446337444666533 0.655353512058252 1 FALSE RoseburiaRoseburia inulinivorans (SP307) 0.281072020547224 1.25600028291098 0.223783405443026 0.822925843064163 1 FALSE CatenibacteriumCatenibacterium mitsuokai (SP309) -1.24683958037373 1.4469350133983 -0.861710836235398 0.38884666103673 1 FALSE PhascolarctobacteriumPhascolarctobacterium faecium (SP341) 0.148516318810928 0.896281843670516 0.165702697047519 0.868390923463694 1 FALSE CoprococcusCoprococcus catus (SP350) 0.165177332632152 1.12030948273655 0.147439020357729 0.882785508257272 1 FALSE EubacteriumEubacterium ramulus (SP363) -0.193129189688906 1.0320193416369 -0.187137180377436 0.851553077336863 1 FALSE BifidobacteriumBifidobacterium bifidum (SP368) -0.442809478243548 1.1523096581417 -0.384279933015277 0.700770979473456 1 FALSE PrevotellaPrevotella stercorea (SP38) -1.23416812377286 1.27788482023302 -0.965789799074237 0.334149373958785 1 FALSE EubacteriumEubacterium ventriosum (SP386) 0.352355179649389 0.983016976646209 0.358442619019186 0.720012102167297 1 FALSE LacnoclostridiumLacnoclostridium sp._str._L2_50 (SP388) 0.706042594798646 1.17918833659604 0.598753034512515 0.549337585404125 1 FALSE MassiliprevotellaMassiliprevotella massiliensis (SP40) 1.39889117728625 1.21474704376281 1.15159051793453 0.249489379639202 1 FALSE AlistipesAlistipes finegoldii (SP400) 0.331502405374511 0.940419860060389 0.352504683762446 0.724459806481098 1 FALSE AkkermansiaAkkermansia muciniphila (SP403) 0.144630418411287 1.41228064708642 0.102409120106307 0.918431944936131 1 FALSE EubacteriumEubacterium siraeum (SP407) 1.24364536589775 1.12140041839134 1.1090109701241 0.267425449559724 1 FALSE PhocaeicolaPhocaeicola vulgatus (SP41) 1.08094500111948 1.32850906633563 0.813652709274318 0.415843932937923 1 FALSE DuodenibacillusDuodenibacillus massiliensis (SP419) -0.942404083963006 1.24611479200092 -0.756273892271004 0.449484997877948 1 FALSE EubacteriumEubacterium hallii (SP439) -1.33725857948332 1.18373515726851 -1.12969406312901 0.258605159720677 1 FALSE FaecalibacteriumFaecalibacterium prausnitzii (SP53) 0.0800371224858158 0.353344588009026 0.226512942894632 0.820802493838102 1 FALSE DoreaDorea longicatena (SP77) 0.188315616414342 0.988455128224761 0.190515088684453 0.848905520654079 1 FALSE SubdoligranulumSubdoligranulum variabile (SP78) 0.576406973706345 1.18062118569608 0.488223471414754 0.625391561070835 1 FALSE CollinsellaCollinsella aerofaciens (SP79) 0.507328238239628 0.845908077182396 0.599743934269394 0.548676903411399 1 FALSE SolobacteriumSolobacterium moorei (SP81) -1.02906251831041 0.689774863375912 -1.49188173264817 0 0 TRUE BlautiaBlautia faecis (SP86) 0.832774090079491 1.21252046671605 0.686812398585692 0.492200955620589 1 FALSE BifidobacteriumBifidobacterium longum (SP93) -1.49434091330735 1.14381556316336 -1.30645268470955 0.191398659439833 1 FALSE StreptococcusStreptococcus thermophilus (SP98) 0.306936490890367 1.08421760378297 0.283094915466626 0.777104079110671 1 FALSE AcetanaerobacteriumAcetanaerobacterium elongatum_nov_92.081% (SPN109) 0.575769381646823 1.27951311028391 0.449990998153248 0.652716931405919 1 FALSE OscillibacterOscillibacter ruminantium_nov_94.144% (SPN119) 2.74592473114535 0.948870569850282 2.89388755262861 0.00380504400757269 0.487045632969305 FALSE OscillibacterOscillibacter valericigenes_nov_94.344% (SPN120) 1.58906532282211 0.951131349418776 1.67071070025519 0.0947788343145899 1 FALSE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085_nov_93.946% (SPN129) 0.136938678911506 1.26383138256145 0.10835201657516 0.913716462192163 1 FALSE PrevotellaPrevotella stercorea_nov_97.403% (SPN140) -0.864063603234062 1.28482381086209 -0.672515247560905 0.501255736542575 1 FALSE RuminococcusRuminococcus callidus_nov_94.369% (SPN144) 0.703419693974534 1.28173314855683 0.548803543675648 0.583140278138243 1 FALSE EubacteriumEubacterium coprostanoligenes_nov_97.059% (SPN149) 0.55079121643093 1.37445449282796 0.400734414493179 0.688615670416058 1 FALSE KineothrixKineothrix alysoides_nov_96.825% (SPN170) 0.587000650292388 1.0842008762108 0.541413185667132 0.588222820808508 1 FALSE FaecalibacteriumFaecalibacterium prausnitzii_nov_97.964% (SPN182) -0.981227736392943 1.07198485258201 -0.915337314729342 0.360014575516193 1 FALSE Clostridiales_[F-1][G-2]Clostridiales_[F-1][G-2] bacterium_HMT_402_nov_89.038% (SPN193) -0.11358351115326 1.03403880277102 -0.109844534701095 0.912532671134098 1 FALSE OscillibacterOscillibacter ruminantium_nov_93.919% (SPN194) 0.973601686677532 1.12124471129424 0.868322210905871 0.385217966338389 1 FALSE AlloprevotellaAlloprevotella rava_nov_92.857% (SPN2) 0.719561650988144 1.30916547643159 0.549633842277495 0.582570541943024 1 FALSE LachnospiraLachnospira pectinoschiza_nov_96.372% (SPN205) 0.018358534814982 0.869507464647864 0.0211137173185936 0.983154942496691 1 FALSE PrevotellaPrevotella copri_nov_97.397% (SPN216) -0.492314871785576 1.30874833243432 -0.376172301109909 0.706788806186327 1 FALSE LachnospiraLachnospira eligens_nov_94.785% (SPN226) -0.703137060469319 1.18979278887332 -0.590974383980892 0.554537584603857 1 FALSE unclassified_Ruminococcaceaeunclassified_Ruminococcaceae sp._str._D16_nov_93.243% (SPN23) 1.01730612520116 1.09140582938635 0.932106186177458 0.351281651351706 1 FALSE EubacteriumEubacterium ruminantium_nov_97.279% (SPN236) 0.0452239029365901 1.28084926974605 0.0353077477614181 0.971834345364103 1 FALSE ButyrivibrioButyrivibrio sp._HMT_090_nov_92.795% (SPN246) -1.47238198843534 1.17498201713148 -1.25311023229948 0.210165592711254 1 FALSE SporobacterSporobacter termitidis_nov_90.562% (SPN249) 1.4270749624946 1.27432797521824 1.11986473674502 0.262771407304308 1 FALSE ParaprevotellaParaprevotella clara_nov_97.609% (SPN255) 0.10113945316306 0.90165977749939 0.112170306014487 0.910688372921089 1 FALSE PrevotellaPrevotella colorans_nov_93.492% (SPN264) 0.075979319800709 1.11740924868152 0.0679959646748587 0.945788846574621 1 FALSE SporobacterSporobacter termitidis_nov_93.243% (SPN275) 2.50446469153441 0.911472885335748 2.74771167834781 0 0 TRUE ChristensenellaChristensenella massiliensis_nov_90.766% (SPN289) 0.297040620658225 1.17277969428404 0.253279130007075 0.800052522273718 1 FALSE AcutalibacterAcutalibacter muris_nov_96.599% (SPN301) 0.855186940844582 1.01214603703727 0.84492445709501 0.398153018311943 1 FALSE PrevotellamassiliaPrevotellamassilia timonensis_nov_97.397% (SPN322) -1.38394226264443 0.902569499781535 -1.53333595139145 0 0 TRUE EubacteriumEubacterium coprostanoligenes_nov_92.777% (SPN334) 0.91021923563395 1.10790226930893 0.82156997133124 0.411321685568999 1 FALSE KineothrixKineothrix alysoides_nov_96.614% (SPN335) 0.105751685593625 1.28188380373025 0.082497091613055 0.934251431009533 1 FALSE AsteroleplasmaAsteroleplasma anaerobium_nov_80.300% (SPN346) -0.730080546065678 1.20953793628755 -0.603602850445948 0.546107717258475 1 FALSE SuccinivibrioSuccinivibrio dextrinosolvens_nov_97.079% (SPN35) -0.156999863592027 1.44631303986711 -0.10855178599956 0.913558003877186 1 FALSE EubacteriumEubacterium coprostanoligenes_nov_95.711% (SPN358) 0.489380568682805 1.24288881291246 0.393744447289729 0.693769722482757 1 FALSE PrevotellaPrevotella oralis_nov_92.641% (SPN366) -0.695593247709182 1.15338929072607 -0.603086272173809 0.546451298340645 1 FALSE DuncaniellaDuncaniella freteri_nov_87.069% (SPN39) 0.574548339875985 1.38376462135457 0.415206698458269 0.677990595613294 1 FALSE PrevotellaPrevotella copri_nov_96.537% (SPN390) -0.305429366018551 1.12126567461791 -0.272396964370314 0.785316806567715 1 FALSE OscillibacterOscillibacter ruminantium_nov_93.049% (SPN399) 0.542459313634315 1.17587782826842 0.461322852249995 0.644566991957383 1 FALSE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085_nov_91.422% (SPN409) -2.10698668061311 0.982621063030072 -2.14425149214273 0.0320127412473593 1 FALSE RuminococcusRuminococcus bromii_nov_97.528% (SPN418) 1.13673654784594 1.23656308220044 0.919270973077357 0.357953856478834 1 FALSE DialisterDialister succinatiphilus_nov_96.360% (SPN436) -1.3901452392029 1.35120647660778 -1.0288177737964 0.303565312999782 1 FALSE PrevotellaPrevotella copri_nov_96.963% (SPN455) -0.453547466551685 1.17880290589164 -0.384752586106517 0.700420730603237 1 FALSE FusicatenibacterFusicatenibacter saccharivorans_nov_97.279% (SPN462) -1.27678268699487 0.99788348048189 -1.27949075414927 0.200724293433824 1 FALSE LacrimisporaLacrimispora xylanolytica_nov_97.285% (SPN536) -0.940488528259299 1.24279775929363 -0.756751065268935 0.449199014931205 1 FALSE Clostridiales_[F-1][G-2]Clostridiales_[F-1][G-2] bacterium_HMT_402_nov_91.011% (SPN55) 0.637546832843306 1.24356299304979 0.512677553454488 0.608176893778093 1 FALSE MonoglobusMonoglobus pectinilyticus_nov_90.112% (SPN567) 0.349861644553394 1.21088461964996 0.288930620536357 0.772634470767823 1 FALSE ErysipelatoclostridiumErysipelatoclostridium [Clostridium] spiroforme_nov_93.333% (SPN610) 1.00287351696527 1.24600211349743 0.804873046443141 0.420892943729509 1 FALSE LachnoclostridiumLachnoclostridium pacaense_nov_96.145% (SPN621) -0.417525527123489 1.29329077116903 -0.32283964011131 0.746816690604063 1 FALSE SporobacterSporobacter termitidis_nov_92.584% (SPN635) 0.222247536468003 1.33125272542319 0.166946164483797 0.867412408819852 1 FALSE RuminoclostridiumRuminoclostridium methylpentosum_nov_89.462% (SPN64) -0.539016579516012 1.2020226420559 -0.448424647470948 0.653846756954789 1 FALSE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085_nov_92.809% (SPN75) 0.685167085742606 1.36028594679866 0.503693423691613 0.61447683036949 1 FALSE AgathobaculumAgathobaculum desmolans_nov_97.738% (SPN87) -1.45789896248981 1.18368281729742 -1.23166353450875 0.218074796863849 1 FALSE OscillibacterOscillibacter ruminantium_nov_92.601% (SPN96) 0.902364484889316 1.09942130933287 0.820763138961595 0.411781198603996 1 FALSE HoldemanellaHoldemanella biformis_nov_97.854% (SPN98) 0.00675894834600177 1.34760794391595 0.00501551536299295 0.995998214505154 1 FALSE BacteroidesBacteroides sp._str._4136_uniformis (SPP1) -0.606041907398008 1.08543378715242 -0.558340743186123 0.576611728247435 1 FALSE Anaerostipes_Lacnoclostridium_unclassified_LachnospiraceaeAnaerostipes_Lacnoclostridium_unclassified_Lachnospiraceae hadrus_sp._SSC/2_sp._str._cont1.81 (SPP104) -0.529760245722596 0.973564535723154 -0.544144970655792 0.586341716313441 1 FALSE Lactobacillus_LigilactobacillusLactobacillus_Ligilactobacillus ruminis (SPP105) -1.45259855487007 1.12434015103655 -1.29195648979616 0.196372212997228 1 FALSE Blautia_MediterraneibacterBlautia_Mediterraneibacter [Ruminococcus] lactaris_lactaris (SPP117) 0.159882042440416 1.02307767850042 0.156275565189501 0.87581581583993 1 FALSE RoseburiaRoseburia faecalis_faecis (SPP12) -1.4798151291632 1.17299864371966 -1.26156593367458 0.207105020843956 1 FALSE Blautia_MediterraneibacterBlautia_Mediterraneibacter [Ruminococcus] gnavus_gnavus (SPP137) 0.0653657753797142 1.05521220711279 0.0619456209273435 0.950606136986385 1 FALSE Blautia_unclassified_LachnospiraceaeBlautia_unclassified_Lachnospiraceae sp._str._cont1.79_torques (SPP138) -1.22313673620009 0.805632179399329 -1.51823222492434 0 0 TRUE LacnoclostridiumLacnoclostridium sp._SM4/1_sp._str._M62/1 (SPP14) -0.207509077719669 1.27359501895818 -0.162931759806516 0.870572164238005 1 FALSE Bacteroides_PhocaeicolaBacteroides_Phocaeicola dorei_sp._Oral_Taxon_D25_sp._str._219_sp._str._3133FAA (SPP15) -0.108330734760745 0.893295425316944 -0.121270893917664 0.90347647313025 1 FALSE BifidobacteriumBifidobacterium adolescentis_faecale (SPP19) -1.28893627293065 1.39475707681041 -0.924129580957746 0.355418853653573 1 FALSE Escherichia_ShigellaEscherichia_Shigella coli_dysenteriae_fergusonii_flexneri_sonnei (SPP26) -1.44867514713684 1.27549184413178 -1.13577766396691 0.256049627316369 1 FALSE BlautiaBlautia obeum_wexlerae (SPP29) -0.694823169254003 1.09457827216717 -0.634786188363044 0.525567872436371 1 FALSE Parasutterella_SutterellaParasutterella_Sutterella excrementihominis_sp._str._cont1.66 (SPP54) -0.0221916105761146 0.860015524346823 -0.0258037325465363 0.979413884699871 1 FALSE BifidobacteriumBifidobacterium catenulatum_pseudocatenulatum (SPP67) 1.25446459403293 1.19712668854597 1.0478962719949 0.294686400070614 1 FALSE BacteroidesBacteroides koreensis_kribbi (SPP68) 0.608292654288293 1.0354234419207 0.587482019105069 0.556880023149904 1 FALSE Bacteroides_PhocaeicolaBacteroides_Phocaeicola plebeius (SPP74) -1.00864163534226 0.658525555659633 -1.53166665541464 0 0 TRUE RuminococcusRuminococcus multispecies_sppn1_2_nov_95.023% (SPPN1) -0.0955500982422113 1.33317337804127 -0.0716711718190743 0.942863598700085 1 FALSE RoseburiaRoseburia multispecies_sppn106_3_nov_96.833% (SPPN106) -0.454319357182925 1.06326860380174 -0.427285594212504 0.669171324148009 1 FALSE ChristensenellaChristensenella multispecies_sppn2_2_nov_91.216% (SPPN2) 1.03882716642265 1.21985718629202 0.851597365737828 0.394437602189354 1 FALSE ClostridiumClostridium multispecies_sppn27_2_nov_97.959% (SPPN27) -1.80002077625633 1.07396622609059 -1.67604970484844 0.0937284570868598 1 FALSE multigenusmultigenus multispecies_sppn46_2_nov_92.568% (SPPN46) 0.233473966921494 1.09429570246651 0.213355463605725 0.831049715590127 1 FALSE RoseburiaRoseburia multispecies_sppn52_2_nov_97.072% (SPPN52) 0.235473400299153 0.974973455846581 0.241517755059997 0.809153857169566 1 FALSE LacnoclostridiumLacnoclostridium multispecies_sppn68_2_nov_97.279% (SPPN68) 1.46762916403725 1.00381933542531 1.46204512330442 0.143728845087473 1 FALSE