GroupFeces Parkinson + Periodontitis...1 GroupFeces Parkinson + Periodontitis...2 GroupFeces Parkinson + Periodontitis...3 GroupFeces Parkinson + Periodontitis...4 GroupFeces Parkinson + Periodontitis...5 GroupFeces Parkinson + Periodontitis...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP104) -5.91442641465454 0.717702311826923 -8.24077938330625 0 0 TRUE HaemophilusHaemophilus parainfluenzae (SP108) -4.61146959398415 0.639582605573181 -7.21012353025368 0 0 TRUE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP109) -4.03229305443018 0.563212241786134 -7.15945562838343 0 0 TRUE RothiaRothia dentocariosa (SP116) -4.21858763204382 0.658527372622516 -6.40609306070869 0 0 TRUE AbiotrophiaAbiotrophia defectiva (SP118) -4.72445329947527 0.709511067471538 -6.65874503735601 0 0 TRUE ButyrivibrioButyrivibrio crossotus (SP126) 1.17871403838602 0.995962636415107 1.18349222680553 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP132) -6.24737770281227 0.640575593711313 -9.75275637121411 0 0 TRUE NeisseriaNeisseria elongata (SP136) -3.37991490951109 0.550874190406441 -6.13554776820702 0 0 TRUE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP137) -6.07828209195924 0.538768168049498 -11.2818136861434 0 0 TRUE PeptostreptococcusPeptostreptococcus stomatis (SP155) -6.1221461424973 0.628671054813214 -9.73823447990025 0 0 TRUE TannerellaTannerella forsythia (SP158) -4.9477438874104 0.61419213885464 -8.05569393420935 0 0 TRUE PrevotellaPrevotella salivae (SP163) -3.7804200173962 0.594942480964191 -6.35426135862659 0 0 TRUE BacteroidesBacteroides caccae (SP164) -0.555227851491317 1.00472588010206 -0.552616253335604 0 0 TRUE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP171) -7.08848680655531 0.68469353022366 -10.3527877709605 0 0 TRUE BergeyellaBergeyella sp._HMT_322 (SP179) -3.7689883695019 0.564178101926506 -6.68049390189355 0 0 TRUE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_155 (SP182) -4.96543535210236 0.591534739411171 -8.39415679465432 0 0 TRUE PrevotellaPrevotella histicola (SP183) -3.55050105188547 0.571348809750206 -6.21424424326315 0 0 TRUE FusicatenibacterFusicatenibacter saccharivorans (SP185) 0.24173165088302 0.970119237498322 0.24917725733012 0 0 TRUE Peptostreptococcaceae_[XI][G-1]Peptostreptococcaceae_[XI][G-1] [Eubacterium]_sulci (SP186) -5.77695887690751 0.660841932845154 -8.74181644623502 0 0 TRUE MycoplasmaMycoplasma faucium (SP188) -5.72632366089721 0.562742221943095 -10.1757491043142 0 0 TRUE AgathobaculumAgathobaculum butyriciproducens (SP193) -0.515784690774057 1.0701058198165 -0.481994099296181 0 0 TRUE OribacteriumOribacterium sinus (SP206) -3.47025599262513 0.525636391749098 -6.60200862630071 0 0 TRUE PrevotellaPrevotella melaninogenica (SP222) -5.0663363197222 0.700887944511766 -7.22845407656623 0 0 TRUE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085 (SP223) -6.05338874809313 0.62119899415684 -9.74468536657798 0 0 TRUE OdoribacterOdoribacter splanchnicus (SP224) -0.952064956133562 0.817521441494127 -1.16457490630893 0 0 TRUE Erysipelotrichaceae_[G-1]Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP227) -4.38856267732926 0.591758445463216 -7.41613864740703 0 0 TRUE GemellaGemella sanguinis (SP23) -3.51209704611031 0.577365775702473 -6.08296714822972 0 0 TRUE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP234) -5.24736666515091 0.632750323856251 -8.29294978969148 0 0 TRUE CampylobacterCampylobacter concisus (SP236) -4.5994443705561 0.589022225258301 -7.80860920577171 0 0 TRUE RuminococcusRuminococcus callidus (SP24) 0.512504132849286 1.18805740746069 0.431379939749454 0 0 TRUE ParabacteroidesParabacteroides merdae (SP240) -0.32201409037605 0.888707527982927 -0.362339780227715 0 0 TRUE ActinomycesActinomyces graevenitzii (SP241) -3.39413478154985 0.506144590909435 -6.70586002993989 0 0 TRUE PorphyromonasPorphyromonas endodontalis (SP248) -4.51707291779137 0.710420257464987 -6.35831097202911 0 0 TRUE RothiaRothia mucilaginosa (SP25) -7.31933778275705 0.57823419805355 -12.658085266135 0 0 TRUE PorphyromonasPorphyromonas sp._HMT_285 (SP252) -3.67224238745963 0.547240901514389 -6.71046768853967 0 0 TRUE MediterraneibacterMediterraneibacter faecis (SP254) -0.296432037717252 1.07396055697683 -0.276017620751082 0 0 TRUE LactobacillusLactobacillus rogosae (SP259) 0.954572072107824 1.01305131999423 0.942274150645455 0 0 TRUE EubacteriumEubacterium rectale (SP26) 0.937439610400562 1.00271903658981 0.934897589646583 0 0 TRUE CoprococcusCoprococcus eutactus (SP266) -0.492190542865591 0.989842012830118 -0.497241515803455 0 0 TRUE CapnocytophagaCapnocytophaga gingivalis (SP268) -3.32901328462487 0.462330551922419 -7.20050464063534 0 0 TRUE PrevotellaPrevotella copri (SP27) 3.80703796596081 0.431601732764887 8.82071983718071 0 0 TRUE BilophilaBilophila wadsworthia (SP270) -0.752455900063496 0.849124663222761 -0.886154804652159 0 0 TRUE DoreaDorea formicigenerans (SP273) -0.333668374232111 0.765801131037838 -0.435711519229428 0 0 TRUE GemellaGemella haemolysans (SP275) -6.33793962293001 0.643261977581462 -9.85281245249317 6.66522646848228e-23 8.73144667371179e-21 TRUE BlautiaBlautia luti (SP28) 0.162754498521727 0.963985250203699 0.1688350506269 0 0 TRUE CorynebacteriumCorynebacterium durum (SP280) -3.36089630120509 0.472889441642851 -7.10715022422387 0 0 TRUE AlistipesAlistipes shahii (SP288) -0.422697965479662 0.975200626840998 -0.433447183938881 0 0 TRUE LachnospiraLachnospira eligens (SP29) 0.940025152963388 0.99608999355801 0.94371508502524 0 0 TRUE LacnoclostridiumLacnoclostridium sp._SS3/4 (SP295) 0.528715257735406 0.800868909342738 0.660177029683067 0 0 TRUE CoprococcusCoprococcus comes (SP297) 1.79414587023006 0.77970955253568 2.30104384946337 0 0 TRUE PrevotellaPrevotella pallens (SP30) -3.94794476163036 0.605699568636933 -6.51799170092661 0 0 TRUE RoseburiaRoseburia inulinivorans (SP307) -0.517209216797291 0.997642468099815 -0.518431435444409 0 0 TRUE CatenibacteriumCatenibacterium mitsuokai (SP309) -0.276142672491145 1.18569634347157 -0.232894934703631 0 0 TRUE CapnocytophagaCapnocytophaga leadbetteri (SP323) -3.93991951391733 0.566853978939753 -6.95050164644973 0 0 TRUE Peptostreptococcaceae_[XI][G-4]Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP325) -4.54551355322524 0.572810732275596 -7.93545458753428 0 0 TRUE CoprococcusCoprococcus catus (SP350) -0.126491029413815 0.852562527897965 -0.148365691987056 0 0 TRUE GranulicatellaGranulicatella elegans (SP355) -3.78682638430267 0.612319795643921 -6.18439320636434 0 0 TRUE LacnoclostridiumLacnoclostridium sp._str._L2_50 (SP388) -0.700677653917142 0.970539600237658 -0.721946486001773 0 0 TRUE CorynebacteriumCorynebacterium argentoratense (SP392) -3.67204281029818 0.589590161746194 -6.22812768690485 0 0 TRUE MassiliprevotellaMassiliprevotella massiliensis (SP40) 0.512392866220733 1.00094851110099 0.511907316448404 0 0 TRUE AkkermansiaAkkermansia muciniphila (SP403) -0.224135390387967 1.08344285063885 -0.206873293091375 0 0 TRUE EubacteriumEubacterium siraeum (SP407) 0.287750989663642 0.871223045211204 0.330283951102194 0 0 TRUE PhocaeicolaPhocaeicola vulgatus (SP41) 0.852756747694644 0.954873432163444 0.893057361290872 0 0 TRUE VeillonellaVeillonella atypica (SP426) -3.84735714067943 0.621299482676753 -6.19243577043362 0 0 TRUE PorphyromonasPorphyromonas pasteri (SP43) -5.02957702628292 0.57912582344957 -8.68477422803249 0 0 TRUE SelenomonasSelenomonas noxia (SP435) -3.77197258206124 0.608707662038446 -6.19668983536304 0 0 TRUE FaecalibacteriumFaecalibacterium prausnitzii (SP53) 3.88745586305485 0.25302190398308 15.3641080153867 0 0 TRUE NeisseriaNeisseria subflava (SP56) -4.9070139883696 0.745051667168218 -6.58613919625213 0 0 TRUE StreptococcusStreptococcus anginosus (SP59) -4.93901476407319 0.734065089316224 -6.72830629866058 0 0 TRUE Ruminococcaceae_[G-1]Ruminococcaceae_[G-1] bacterium_HMT_075 (SP60) -6.86996730832709 0.608100183838643 -11.297426790698 0 0 TRUE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP66) -5.66103525758782 0.57421632021077 -9.85871536272235 0 0 TRUE ParvimonasParvimonas micra (SP68) -4.97195767936743 0.684183186168025 -7.26699775715681 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_352 (SP70) -7.55087174248865 0.552417278522485 -13.668782704778 0 0 TRUE ActinomycesActinomyces odontolyticus (SP76) -3.7228612265119 0.671517341331838 -5.54395396420926 0 0 TRUE DoreaDorea longicatena (SP77) 1.84148991413102 0.708145080708915 2.60044158223556 0 0 TRUE SubdoligranulumSubdoligranulum variabile (SP78) 2.00493926423895 0.86615321774615 2.3147628192805 0 0 TRUE CollinsellaCollinsella aerofaciens (SP79) 2.05482539476139 0.378471498328046 5.42927381279406 0 0 TRUE SolobacteriumSolobacterium moorei (SP81) -7.95762497661819 0.28830443327233 -27.6014658751414 0 0 TRUE BlautiaBlautia faecis (SP86) 0.975010461368364 0.929169255000124 1.04933569004953 0 0 TRUE Gracilibacteria_(GN02)_[G-2]Gracilibacteria_(GN02)_[G-2] bacterium_HMT_873 (SP89) -4.28549050098185 0.629210194250143 -6.8109044324831 0 0 TRUE BifidobacteriumBifidobacterium longum (SP93) -2.44248634139481 0.782411589250948 -3.12174100556609 0.00179785025976668 0.131243068962968 FALSE StreptococcusStreptococcus thermophilus (SP98) -0.816596202703965 0.871001898631526 -0.937536650593942 0 0 TRUE AcetanaerobacteriumAcetanaerobacterium elongatum_nov_92.081% (SPN109) -0.300757359249087 1.06097090536382 -0.283473710474609 0 0 TRUE OscillibacterOscillibacter ruminantium_nov_94.144% (SPN119) 2.90463074234028 0.306716897951101 9.47007081039063 0 0 TRUE OscillibacterOscillibacter valericigenes_nov_94.344% (SPN120) 1.29977557292524 0.714105818983312 1.82014421164605 0 0 TRUE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085_nov_93.946% (SPN129) -0.68223271082201 0.981864143753842 -0.69483412258412 0 0 TRUE RuminococcusRuminococcus callidus_nov_94.369% (SPN144) 0.225388785481847 0.982286611342664 0.229453178816892 0 0 TRUE EubacteriumEubacterium coprostanoligenes_nov_97.059% (SPN149) -0.331561537570031 1.0391846493757 -0.319059310363388 0 0 TRUE KineothrixKineothrix alysoides_nov_96.825% (SPN170) -0.851273152371488 0.861911018448159 -0.987657814033026 0 0 TRUE FaecalibacteriumFaecalibacterium prausnitzii_nov_97.964% (SPN182) -0.786485702175098 0.85293935214632 -0.922088657529988 0 0 TRUE Clostridiales_[F-1][G-2]Clostridiales_[F-1][G-2] bacterium_HMT_402_nov_89.038% (SPN193) 1.04710877796898 0.909373404552515 1.15146184474599 0 0 TRUE OscillibacterOscillibacter ruminantium_nov_93.919% (SPN194) -0.514496078873111 0.960812886949103 -0.535479993931811 0 0 TRUE AlloprevotellaAlloprevotella rava_nov_92.857% (SPN2) 0.280567776397858 1.02737810112682 0.273091061693971 0 0 TRUE LachnospiraLachnospira eligens_nov_94.785% (SPN226) 0.270453998944718 0.991387112914397 0.272803625770019 0 0 TRUE unclassified_Ruminococcaceaeunclassified_Ruminococcaceae sp._str._D16_nov_93.243% (SPN23) 0.731577642713412 0.886813700059912 0.824950767747485 0 0 TRUE EubacteriumEubacterium ruminantium_nov_97.279% (SPN236) -0.552357631027848 1.11051169324408 -0.497390198039495 0 0 TRUE SporobacterSporobacter termitidis_nov_90.562% (SPN249) 0.518282466398912 1.0945724968892 0.473502182698616 0 0 TRUE SporobacterSporobacter termitidis_nov_93.243% (SPN275) 0.0208538474149704 0.918170500340706 0.0227123910071519 0 0 TRUE ChristensenellaChristensenella massiliensis_nov_90.766% (SPN289) -0.690945903668957 0.945184329534421 -0.731017095902662 0 0 TRUE AcutalibacterAcutalibacter muris_nov_96.599% (SPN301) 0.474265216036828 0.806776193803918 0.587852268918207 0 0 TRUE EubacteriumEubacterium coprostanoligenes_nov_92.777% (SPN334) 2.08820192861889 0.84866875127816 2.46056182164585 0 0 TRUE KineothrixKineothrix alysoides_nov_96.614% (SPN335) -0.490185057044727 1.09407558037278 -0.448035826626996 0 0 TRUE SuccinivibrioSuccinivibrio dextrinosolvens_nov_97.079% (SPN35) -0.439249298466067 1.12944424475073 -0.388907465337529 0 0 TRUE EubacteriumEubacterium coprostanoligenes_nov_95.711% (SPN358) 0.545346806909484 0.954912185314616 0.571096290628869 0 0 TRUE DuncaniellaDuncaniella freteri_nov_87.069% (SPN39) 0.403789799262437 1.11874523692174 0.360930966171956 0 0 TRUE OscillibacterOscillibacter ruminantium_nov_93.049% (SPN399) -0.504005968784102 0.998998522849185 -0.504511225248518 0 0 TRUE RuminococcusRuminococcus bromii_nov_97.528% (SPN418) -0.396230601970606 1.06158462606885 -0.373244480223762 0 0 TRUE DialisterDialister succinatiphilus_nov_96.360% (SPN436) 0.60888800829955 1.16462788267252 0.522817646184384 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346_nov_97.968% (SPN45) -4.89907521866573 0.696190171602656 -7.03697842701208 0 0 TRUE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_97.072% (SPN467) -3.58590471363636 0.559918426148495 -6.40433417828859 0 0 TRUE LacrimisporaLacrimispora xylanolytica_nov_97.285% (SPN536) 0.24660937772327 1.05608763824638 0.233512228334346 0 0 TRUE Clostridiales_[F-1][G-2]Clostridiales_[F-1][G-2] bacterium_HMT_402_nov_91.011% (SPN55) -0.328681808831367 1.08049949995915 -0.304194318316477 0 0 TRUE MonoglobusMonoglobus pectinilyticus_nov_90.112% (SPN567) -0.326925288305782 0.891700260633378 -0.366631370135034 0 0 TRUE ErysipelatoclostridiumErysipelatoclostridium [Clostridium] spiroforme_nov_93.333% (SPN610) 0.222671098565542 0.988204734107482 0.225328913007741 0 0 TRUE LachnoclostridiumLachnoclostridium pacaense_nov_96.145% (SPN621) -0.503597248332263 1.02006703946964 -0.493690344699398 0 0 TRUE SporobacterSporobacter termitidis_nov_92.584% (SPN635) -0.173792588265825 1.10292665819374 -0.157574020878636 0 0 TRUE RuminoclostridiumRuminoclostridium methylpentosum_nov_89.462% (SPN64) -0.224383642656496 0.929407931618595 -0.241426433994085 0 0 TRUE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085_nov_92.809% (SPN75) -0.250169031573062 1.09423186171562 -0.228625248748311 0 0 TRUE OscillibacterOscillibacter ruminantium_nov_92.601% (SPN96) 2.18761232382813 0.83726453435221 2.61280901563648 0 0 TRUE HoldemanellaHoldemanella biformis_nov_97.854% (SPN98) -0.480459977229927 1.03171986331973 -0.465688404683777 0 0 TRUE NeisseriaNeisseria flavescens_flavescens|subflava (SPP109) -5.88835492904768 0.929251008430163 -6.33666778473043 0 0 TRUE StreptococcusStreptococcus cristatus_gwangjuense_infantis_infantis_clade_431_ ...(20 species) (SPP11) -9.77760992038317 0.406961847632052 -24.0258637935599 0 0 TRUE NeisseriaNeisseria flavescens|subflava_perflava (SPP111) -4.3497316798771 0.784942192917072 -5.54146753624269 0 0 TRUE StreptococcusStreptococcus sanguinis_sp._HMT_074 (SPP113) -3.49408444061356 0.487871417821285 -7.16189617382648 0 0 TRUE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP118) -6.62594624724245 0.663258192033821 -9.9899953394086 0 0 TRUE RoseburiaRoseburia faecalis_faecis (SPP12) -0.880332261764474 0.907233155398178 -0.970348423143886 0 0 TRUE GranulicatellaGranulicatella adiacens_paradiacens (SPP134) -7.80172761464257 0.423768724981699 -18.4103430827263 0 0 TRUE Actinomyces_SchaaliaActinomyces_Schaalia odontolytica_odontolyticus (SPP135) -3.4444150015956 0.53034681198332 -6.49464637812122 0 0 TRUE StreptococcusStreptococcus salivarius_sp._str._ACS2_sp._str._C150_vestibulari ...(4 species) (SPP17) -5.90755113408983 0.724363541562112 -8.15550589604499 0 0 TRUE ParvimonasParvimonas sp._HMT_110_sp._HMT_393_sp._Oral_Taxon_110 (SPP18) -5.9493468430935 0.7486555328711 -7.94670790754421 0 0 TRUE Escherichia_ShigellaEscherichia_Shigella coli_dysenteriae_fergusonii_flexneri_sonnei (SPP26) -0.281111259367224 1.0719024332707 -0.262254521159607 0 0 TRUE GemellaGemella morbillorum_moribillum (SPP27) -6.03589729451467 0.640681122115993 -9.4210631251 0 0 TRUE BlautiaBlautia obeum_wexlerae (SPP29) 0.792156809061703 0.918391297679404 0.862548252649311 0 0 TRUE NeisseriaNeisseria flava_macacae_mucosa_sicca_sp._TM101 (SPP39) -5.06901547010432 0.697739617505799 -7.26490992187669 0 0 TRUE Actinomyces_SchaaliaActinomyces_Schaalia odontolyticus_sp._HMT_180 (SPP5) -5.87027177638099 0.808845919592934 -7.25758965234728 0 0 TRUE SelenomonasSelenomonas sp._HMT_136_sp._Oral_Taxon_149 (SPP56) -4.19588575130668 0.636816620741604 -6.58884459771222 0 0 TRUE BifidobacteriumBifidobacterium catenulatum_pseudocatenulatum (SPP67) -0.43713793018119 1.04702234457263 -0.417505827308412 0 0 TRUE OribacteriumOribacterium parvum_sp._str._ACB1 (SPP79) -3.49521012549335 0.53973358688121 -6.47580623190421 0 0 TRUE MogibacteriumMogibacterium diversum_neglectum_vescum (SPP8) -4.67443672118901 0.614896073262862 -7.6019947507304 0 0 TRUE StreptococcusStreptococcus parasanguinis_parasanguinis_I_parasanguinis_clade_ ...(4 species) (SPP95) -4.68597475259167 0.649607456890421 -7.21354827886793 0 0 TRUE RuminococcusRuminococcus multispecies_sppn1_2_nov_95.023% (SPPN1) 0.201306297870575 1.05607433816713 0.190617545181481 0 0 TRUE ChristensenellaChristensenella multispecies_sppn2_2_nov_91.216% (SPPN2) 0.598145876737981 0.96444131830922 0.620199347936068 0 0 TRUE LacnoclostridiumLacnoclostridium multispecies_sppn68_2_nov_97.279% (SPPN68) -0.600093371746219 0.932587457335781 -0.643471416032731 0 0 TRUE