GroupSaliva Parkinson + Periodontitis...1 GroupSaliva Parkinson + Periodontitis...2 GroupSaliva Parkinson + Periodontitis...3 GroupSaliva Parkinson + Periodontitis...4 GroupSaliva Parkinson + Periodontitis...5 GroupSaliva Parkinson + Periodontitis...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP104) 1.99375169480441 0.73750075297285 2.70338936844151 0.00686362920877357 0.720681066921224 FALSE SchaaliaSchaalia sp._HMT_180 (SP106) -1.20624083035584 0.684078791156078 -1.76330686749888 0.077848747671375 1 FALSE HaemophilusHaemophilus parainfluenzae (SP108) -1.73178601403421 0.811208485022667 -2.13482236195522 0.0327755229619602 1 FALSE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP109) -0.336821370394601 0.622332443264639 -0.541224186590208 0.58835306848184 1 FALSE RothiaRothia aeria (SP113) -1.16588042085423 0.725756611949979 -1.60643444600762 0.108178487546706 1 FALSE RothiaRothia dentocariosa (SP116) -3.43847522536704 0.843163571178637 -4.07806426048564 4.54122163913393e-05 0.00567652704891741 TRUE AbiotrophiaAbiotrophia defectiva (SP118) -0.524737311480693 0.885966741366195 -0.592276534750648 0.553665426365024 1 FALSE FusobacteriumFusobacterium periodonticum (SP124) -2.3670763820134 0.624489354670198 -3.79041910692536 0.000150393307208271 0.0181975901722007 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP132) 2.31639686007832 0.684312400934529 3.38499909824071 0.000711784883533442 0.0825670464898792 FALSE NeisseriaNeisseria elongata (SP136) -0.348323882555041 0.59367096636268 -0.586728848623273 0.557385829476498 1 FALSE Saccharibacteria_(TM7)_[G-5]Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP137) 1.80442209524821 0.623095582164883 2.89589935620941 0.00378073631812752 0.4121002586759 FALSE BulleidiaBulleidia extructa (SP139) -0.398690950087579 0.379936806299274 -1.04936121870102 0.294011900070248 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP155) -1.66925400141084 0.784933914577413 -2.12661724816607 0.0334518981982685 1 FALSE TannerellaTannerella forsythia (SP158) 1.46595537428699 0.526536217394253 2.78414917314099 0 0 TRUE LautropiaLautropia mirabilis (SP159) -1.2936273688736 0.459410541535227 -2.81584171871774 0.00486496285128681 0.525415987938976 FALSE PrevotellaPrevotella salivae (SP163) -0.599150717345615 0.702748879178579 -0.852581533884399 0.393891406572517 1 FALSE GemellaGemella morbillorum (SP168) 0.317838865997453 0.605751462095064 0.524701772733935 0.599790524778234 1 FALSE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP171) 0.549682760749448 0.892783808104913 0.615695262122018 0.538095664883487 1 FALSE TannerellaTannerella sp._HMT_286 (SP174) -2.00250215907466 0.545106471737722 -3.67359821043945 0.000239158695049704 0.0282207260158651 TRUE TreponemaTreponema denticola (SP178) 0.569851717433846 0.493345899383483 1.15507541087494 0 0 TRUE BergeyellaBergeyella sp._HMT_322 (SP179) -2.54261827690553 0.773814608275926 -3.28582356770252 0.00101684679601779 0.11490368795001 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_155 (SP182) 1.48364683897895 0.509881594161513 2.90978700931296 0 0 TRUE PrevotellaPrevotella histicola (SP183) -0.504496310412929 0.632784095692878 -0.797264523313473 0.425297419601139 1 FALSE StreptococcusStreptococcus lactarius (SP184) -0.661204012336085 0.378126361091108 -1.7486324159684 0.0803545792321054 1 FALSE Peptostreptococcaceae_[XI][G-1]Peptostreptococcaceae_[XI][G-1] [Eubacterium]_sulci (SP186) -0.483207089058119 0.799546732515973 -0.604351277301312 0.545610121527008 1 FALSE MycoplasmaMycoplasma faucium (SP188) 2.24453514777381 0.527849673352921 4.25222418632267 0 0 TRUE CapnocytophagaCapnocytophaga sp._Oral_Taxon_A48 (SP204) -0.721562195876996 0.520809325376607 -1.38546327939735 0.165910853282306 1 FALSE Clostridiales_[G]Clostridiales_[G] sp._Oral_Taxon_G74 (SP205) 0.335596587368307 0.519321970160947 0.646220662038042 0 0 TRUE OribacteriumOribacterium sinus (SP206) -2.38855656800651 0.724424928054825 -3.29717611239593 0.000976622424994365 0.111334956449358 FALSE Saccharibacteria_(TM7)_[G-6]Saccharibacteria_(TM7)_[G-6] bacterium_HMT_870 (SP218) -0.123043259640045 0.558877487714432 -0.220161417027618 0.825745444141642 1 FALSE Bacteroidaceae_[G-1]Bacteroidaceae_[G-1] bacterium_HMT_272 (SP219) 0.632162809512847 0.453486196041726 1.39400673059226 0 0 TRUE PrevotellaPrevotella melaninogenica (SP222) -1.78798710303883 0.823064552412357 -2.17235342938575 0.029829014852037 1 FALSE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085 (SP223) 1.08876132295202 0.754809053317665 1.44243278239247 0.149180321312067 1 FALSE Erysipelotrichaceae_[G-1]Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP227) 0.73675229609432 0.57139097971071 1.28940134208512 0.197258595086792 1 FALSE PrevotellaPrevotella denticola (SP229) -0.102885084399039 0.53649483390172 -0.191772740197321 0.847920224787795 1 FALSE GemellaGemella sanguinis (SP23) -3.92499398956521 0.778844332710899 -5.03951023936145 4.66724659971389e-07 5.97407564763378e-05 TRUE DialisterDialister pneumosintes (SP230) 0.021741822216808 0.402241736872851 0.0540516317024571 0.956894028182551 1 FALSE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP234) -0.592341037065863 0.801061205140736 -0.73944541723475 0.4596365723078 1 FALSE CampylobacterCampylobacter concisus (SP236) -0.0346715005441101 0.663438264821931 -0.0522603268194306 0.958321264706961 1 FALSE ActinomycesActinomyces graevenitzii (SP241) -1.99828379487723 0.729961998782024 -2.73751756695754 0.00619048137532205 0.656191025784137 FALSE PorphyromonasPorphyromonas endodontalis (SP248) -0.159610620768257 0.819734330231754 -0.194710182167351 0.84561984026108 1 FALSE RothiaRothia mucilaginosa (SP25) -1.72428219336094 0.675312449375089 -2.55331024173555 0.0106704404220817 1 FALSE SelenomonasSelenomonas sputigena (SP250) -0.10613937154804 0.582685049525795 -0.182155645892098 0.85546058003119 1 FALSE PorphyromonasPorphyromonas sp._HMT_285 (SP252) -0.156113432241761 0.612263014939555 -0.254977727598282 0.798740301603693 1 FALSE SlackiaSlackia exigua (SP255) 0.660369655150732 0.546949506743526 1.20736859071781 0.227290226096459 1 FALSE Bacteroidetes_[G-3]Bacteroidetes_[G-3] bacterium_HMT_280 (SP262) 0.833043474415822 0.510712938868094 1.63113837738695 0 0 TRUE CapnocytophagaCapnocytophaga gingivalis (SP268) -2.49667091063806 0.663700623715341 -3.76174260114734 0.000168733647723461 0.0202480377268153 TRUE PrevotellaPrevotella sp._HMT_313 (SP272) -0.70473053660657 0.493685117966528 -1.42748993429117 0.153438724486729 1 FALSE GemellaGemella haemolysans (SP275) 0.316761845125582 0.844249186826073 0.375199467252598 0.707512126375671 1 FALSE TreponemaTreponema socranskii (SP279) 0.231348790207072 0.550232673414096 0.420456293101596 0.674152151970998 1 FALSE CorynebacteriumCorynebacterium durum (SP280) -1.33923925895205 0.596189135333441 -2.24633288260617 0.0246826938510546 1 FALSE StomatobaculumStomatobaculum sp._HMT_097 (SP283) -2.91946785092483 0.522710986875014 -5.58524294348323 0 0 TRUE Veillonellaceae_[G-1]Veillonellaceae_[G-1] bacterium_HMT_129 (SP284) 0.0542118882768029 0.424725333824874 0.127639874430368 0 0 TRUE PrevotellaPrevotella pallens (SP30) -1.14450594035689 0.753967424628017 -1.51797796956752 0.129019952497081 1 FALSE PrevotellaPrevotella sp._HMT_305 (SP310) -0.362941540103286 0.420877465673444 -0.862344909634316 0.388497746387193 1 FALSE AlloprevotellaAlloprevotella tannerae (SP313) -0.230541933295516 0.592978649525381 -0.388786229453694 0.697434288319275 1 FALSE CatonellaCatonella morbi (SP318) -1.02595240973254 0.587534613101995 -1.74619909508964 0.0807763620207911 1 FALSE Firmicutes_[G]Firmicutes_[G] sp._Oral_Taxon_A55 (SP321) 0.515761982042466 0.523419252852145 0.985370674143235 0.324442029054847 1 FALSE CapnocytophagaCapnocytophaga leadbetteri (SP323) -0.434162975447718 0.69936413874428 -0.620796737200831 0.534733370314086 1 FALSE Peptostreptococcaceae_[XI][G-4]Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP325) 0.692446521916376 0.611950426777198 1.1315402222417 0.257827784044081 1 FALSE AlloscardoviaAlloscardovia omnicolens (SP328) 0.449123792455683 0.604655952819715 0.742775772505451 0.457617445855889 1 FALSE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP329) 0.132079480025379 0.465597144620142 0.283677598867441 0 0 TRUE PrevotellaPrevotella sp._HMT_309 (SP344) -0.647072019729046 0.522334591027776 -1.23880752078056 0.215416788031954 1 FALSE GranulicatellaGranulicatella elegans (SP355) -0.61458137992489 0.791823415757826 -0.776159643292054 0.437654731174519 1 FALSE CardiobacteriumCardiobacterium hominis (SP356) -0.899036141283758 0.367082598356341 -2.44913854622722 0.0143198354865752 1 FALSE SelenomonasSelenomonas sp._HMT_478 (SP373) -1.43166907388807 0.492018370884998 -2.90978784250049 0.00361674175038094 0.401458334292285 FALSE TM7_[G]TM7_[G] sp._Oral_Taxon_A56 (SP384) -1.53707206220109 0.610284761833536 -2.51861451952875 0.0117817563460746 1 FALSE CorynebacteriumCorynebacterium argentoratense (SP392) 0.190254297174777 0.574183617258078 0.331347484421979 0 0 TRUE MycoplasmaMycoplasma salivarium (SP408) -0.107315555089243 0.421127934138563 -0.254828868829996 0.798855277072784 1 FALSE CapnocytophagaCapnocytophaga sputigena (SP409) -1.34095232764299 0.688474754030159 -1.94771459634996 0.0514491225968321 1 FALSE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_875 (SP411) -0.684838605307708 0.530074058321247 -1.29196778177865 0.196368302288858 1 FALSE LeptotrichiaLeptotrichia sp._HMT_215 (SP414) -1.15232199145899 0.616666535185118 -1.86863065483693 0.0616742178103052 1 FALSE VeillonellaVeillonella atypica (SP426) -0.222206961108531 0.660531652657941 -0.336406227036029 0.736564554353401 1 FALSE Peptostreptococcaceae_[XI][G-6]Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP429) -0.443798075317011 0.419329064584738 -1.05835276587971 0.289894645093559 1 FALSE PorphyromonasPorphyromonas pasteri (SP43) -2.67553922216343 0.787079061647945 -3.39932714835727 0.000675518630789037 0.0790356798023174 FALSE SelenomonasSelenomonas noxia (SP435) -0.042931253423105 0.585838357784247 -0.0732817386445627 0.941581923074757 1 FALSE Veillonellaceae_[G-1]Veillonellaceae_[G-1] sp._Oral_Taxon_G40 (SP458) -0.203693108528487 0.503369329617744 -0.404659355553447 0.685727922144655 1 FALSE TreponemaTreponema lecithinolyticum (SP487) -0.428579370399489 0.407145249940491 -1.05264489874837 0.292503771177244 1 FALSE LeptotrichiaLeptotrichia sp._HMT_417 (SP488) -1.73755168264199 0.443173394333571 -3.92070396115466 0 0 TRUE PrevotellaPrevotella oris (SP501) -0.216468478977459 0.50804449052831 -0.426081736960391 0.670048287479496 1 FALSE CryptobacteriumCryptobacterium curtum (SP510) 0.372143786851856 0.500205725625298 0.743981461600917 0 0 TRUE AlloprevotellaAlloprevotella sp._HMT_308 (SP529) -1.6626762661133 0.429877981140531 -3.86778653259227 0 0 TRUE StreptococcusStreptococcus sanguinis (SP55) -1.45152812776641 0.675630895058259 -2.14840401524451 0.0316816740955438 1 FALSE NeisseriaNeisseria subflava (SP56) 0.317799531273887 0.876714446910371 0.362489214582746 0.716986481828434 1 FALSE StreptococcusStreptococcus anginosus (SP59) 0.401908772817848 0.821539252891394 0.489214327134506 0.624689967366212 1 FALSE Ruminococcaceae_[G-1]Ruminococcaceae_[G-1] bacterium_HMT_075 (SP60) 0.459432966365088 0.778964865024 0.589799343967757 0.555325182570486 1 FALSE StreptococcusStreptococcus sinensis (SP63) -0.464816293352296 0.564368026573699 -0.823604937675535 0.410164069460417 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP66) 1.72926482542256 0.589261714945603 2.93462952294838 0.00333946145739607 0.37401968322836 FALSE ParvimonasParvimonas micra (SP68) 1.34911650313824 0.625264090501602 2.15767469079497 0.030953133047901 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_352 (SP70) -0.816982932479082 0.667200561485945 -1.22449377239664 0.220766014171862 1 FALSE SchaaliaSchaalia odontolytica (SP75) -0.691761356593323 0.607873215875775 -1.13800269287517 0.255119357884576 1 FALSE ActinomycesActinomyces odontolyticus (SP76) -0.350821359769789 0.760832162854132 -0.461102167991614 0.644725306390881 1 FALSE SolobacteriumSolobacterium moorei (SP81) 0.487620018274718 0.520031775291816 0.937673506587342 0.348412222983819 1 FALSE PorphyromonasPorphyromonas sp._HMT_278 (SP83) 0.747476821002259 0.598270249872184 1.24939660824176 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP85) 0.620814897602686 0.613151867248524 1.01249776892721 0 0 TRUE Gracilibacteria_(GN02)_[G-2]Gracilibacteria_(GN02)_[G-2] bacterium_HMT_873 (SP89) 0.464388988105877 0.640188194190666 0.725394489182924 0.468210052902143 1 FALSE PrevotellaPrevotella sp._HMT_396_nov_97.614% (SPN29) -0.323091098831193 0.546320678689211 -0.591394599242311 0.554256058211827 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346_nov_97.968% (SPN45) 0.965484503921095 0.746253372222347 1.29377573336235 0.195742897057556 1 FALSE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_97.072% (SPN467) -0.418564934268392 0.61883824910767 -0.676372113184567 0.498804418124844 1 FALSE Firmicutes_[G]Firmicutes_[G] sp._Oral_Taxon_A55_nov_88.651% (SPN630) 0.0791877488210687 0.538569369071312 0.147033517627668 0.883105564579514 1 FALSE StreptococcusStreptococcus species5_nov_87.234% (SPN634) -1.11321130128353 0.516157780427949 -2.15672676746354 0.0310269600772748 1 FALSE NeisseriaNeisseria flavescens_flavescens|subflava (SPP109) 0.174012295625679 1.11006787558178 0.156758248259801 0.875435379013413 1 FALSE StreptococcusStreptococcus cristatus_gwangjuense_infantis_infantis_clade_431_ ...(20 species) (SPP11) -1.63021481143487 0.443463094056457 -3.67610029624545 0.000236826445258855 0.0281823469858037 TRUE NeisseriaNeisseria flavescens|subflava_perflava (SPP111) -0.0546252090193652 0.940673777139143 -0.0580703006152632 0.953692631134064 1 FALSE StreptococcusStreptococcus sanguinis_sp._HMT_074 (SPP113) -2.92577368575065 0.581396041859374 -5.03232474096947 4.84567530358682e-07 6.15400763555526e-05 TRUE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP118) -0.306927964491923 0.8381657336678 -0.366190064999211 0.714223255099908 1 FALSE GranulicatellaGranulicatella adiacens_paradiacens (SPP134) -1.50688839276468 0.386103698890185 -3.90280745068248 9.50833428437194e-05 0.0116952511697775 TRUE Actinomyces_SchaaliaActinomyces_Schaalia odontolytica_odontolyticus (SPP135) -0.288942106764038 0.554754093745998 -0.520847182601114 0.602473231620716 1 FALSE StreptococcusStreptococcus salivarius_sp._str._ACS2_sp._str._C150_vestibulari ...(4 species) (SPP17) -0.758936945576592 0.941429337478269 -0.806153914439818 0.420154107792711 1 FALSE ParvimonasParvimonas sp._HMT_110_sp._HMT_393_sp._Oral_Taxon_110 (SPP18) 0.158276400715695 0.910781145880528 0.173780936761351 0.862037626684425 1 FALSE StreptococcusStreptococcus gordonii_sp._str._2136FAA (SPP2) 0.0536232142718153 0.53754835925169 0.0997551445352061 0.920538719824943 1 FALSE PorphyromonasPorphyromonas catoniae_sp._HMT_284 (SPP20) 0.00718616870686584 0.4914852228985 0.0146213321826563 0.98833428045068 1 FALSE PorphyromonasPorphyromonas catoniae_sp._HMT_275_sp._HMT_284 (SPP21) -0.113177398803375 0.603810172331359 -0.18743870837152 0.851316675485291 1 FALSE StreptococcusStreptococcus sanguinis_sp._Oral_Taxon_B66 (SPP25) -1.42991774434711 0.566557873937199 -2.52386880515865 0.0116071237384282 1 FALSE GemellaGemella morbillorum_moribillum (SPP27) 2.12933789326289 0.636811883316649 3.34374710813004 0.000826550461346186 0.0950533030548114 FALSE NeisseriaNeisseria flava_macacae_mucosa_sicca_sp._TM101 (SPP39) 1.29738850491285 0.704115241005651 1.84257977864512 0.0653903885772281 1 FALSE Actinomyces_SchaaliaActinomyces_Schaalia odontolyticus_sp._HMT_180 (SPP5) -0.590041517279764 1.01271109437188 -0.58263558141992 0.560138647216965 1 FALSE SelenomonasSelenomonas sp._HMT_136_sp._Oral_Taxon_149 (SPP56) -0.804033500943694 0.781466680835747 -1.02887752051541 0.303537232954712 1 FALSE VeillonellaVeillonella rogosae_sp._str._NVG100cf (SPP60) -1.62838278019069 0.690397065511258 -2.3586177600347 0.0183431388719858 1 FALSE StreptococcusStreptococcus cristatus_cristatus_clade_578 (SPP7) -1.26918597292983 0.529697374357843 -2.39605864474687 0.0165724385459766 1 FALSE VeillonellaVeillonella dispar_parvula (SPP70) -1.52599585760395 0.742267720424798 -2.05585641893551 0.0397963579332522 1 FALSE LachnoanaerobaculumLachnoanaerobaculum gingivalis_umeaense (SPP76) -1.57162011796307 0.610160987525269 -2.5757466473518 0.0100023906292199 1 FALSE OribacteriumOribacterium parvum_sp._str._ACB1 (SPP79) -0.765426527399197 0.644417247468963 -1.18778094535104 0.234919723367798 1 FALSE MogibacteriumMogibacterium diversum_neglectum_vescum (SPP8) 0.487968891238756 0.613138671742042 0.795854043673912 0.42611687532331 1 FALSE StreptococcusStreptococcus mitis_parasanguinis_II_parasanguinis_clade_411 (SPP84) -0.834302516330668 0.396215221341184 -2.10568012381393 0.0352321474971857 1 FALSE ActinomycesActinomyces sp._HMT_169_sp._str._ChDCB197 (SPP87) -1.20879649983426 0.700596769212026 -1.72538120778634 0.0844587956812343 1 FALSE ShuttleworthiaShuttleworthia satelles_sp._Oral_Taxon_G69 (SPP9) 0.444979435132295 0.49534913994037 0.898314742579064 0 0 TRUE StreptococcusStreptococcus parasanguinis_parasanguinis_I_parasanguinis_clade_ ...(4 species) (SPP95) -0.234531626852715 0.721931279563371 -0.32486696932506 0.745281756760983 1 FALSE MobiluncusMobiluncus multispecies_sppn34_2_nov_97.817% (SPPN34) -1.52764281976502 0.72597015245054 -2.10427772355159 0.0353542280767097 1 FALSE