GroupStatic Day 3 MR...1 GroupStatic Day 3 MR...2 GroupStatic Day 3 MR...3 GroupStatic Day 3 MR...4 GroupStatic Day 3 MR...5 GroupStatic Day 3 MR...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance StreptococcusStreptococcus oralis (SP1) 3.09197677591896 0.309574434081689 9.98782985775583 1.72312765535734e-23 1.32680829462516e-21 TRUE StreptococcusStreptococcus sp._str._C300 (SP10) 3.45403818979915 0.444834303746236 7.76477479526754 8.1790420341553e-15 5.97070068493337e-13 TRUE PrevotellaPrevotella nanceiensis (SP101) 2.8567438391588 0.812942179613085 3.51407998108605 0 0 TRUE SelenomonasSelenomonas sputigena (SP102) -3.08114303289096 0.205058896257831 -15.0256491628477 0 0 TRUE ActinomycesActinomyces sp._HMT_175 (SP103) 0.542369698218995 1.28673555309117 0.421508286544226 0 0 TRUE ActinomycesActinomyces odontolyticus (SP106) 0.590763701500495 1.30403034200456 0.453029107123667 0 0 TRUE LeptotrichiaLeptotrichia sp._AF189244.1 (SP108) 0.189960674050576 1.5722340350715 0.120822135771878 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_392 (SP109) -1.72214426114946 1.44972763661128 -1.18790883036137 0 0 TRUE LeptotrichiaLeptotrichia hofstadii (SP11) 0.327471432494328 1.51791023263603 0.215738339101672 0 0 TRUE AlloprevotellaAlloprevotella sp._HMT_473 (SP113) 3.23845460725981 1.05372766910845 3.07333166073151 0 0 TRUE ActinomycesActinomyces sp._HMT_171 (SP115) -1.17151815394856 1.22586441668845 -0.955666987311122 0 0 TRUE RothiaRothia dentocariosa (SP119) -3.04283416379099 0.209538713320005 -14.521584654116 0 0 TRUE GranulicatellaGranulicatella adiacens (SP12) -2.50669186113966 0.22344354843254 -11.2184570945285 0 0 TRUE OttowiaOttowia sp._HMT_894 (SP120) 0.659976823093242 1.19170821697867 0.55380739487261 0 0 TRUE PrevotellaPrevotella sp._HMT_292 (SP121) 0.304631450348743 1.53647871246693 0.19826597523088 0 0 TRUE GranulicatellaGranulicatella paradiacens (SP13) -0.164243773437521 1.8382915208281 -0.0893458798980552 0.92880703295337 1 FALSE Ruminococcaceae_[G-2]Ruminococcaceae_[G-2] bacterium_HMT_085 (SP130) 3.26745839958968 1.13104034483066 2.88889641693454 0 0 TRUE StreptococcusStreptococcus mitis (SP14) -3.50655157281051 0.254447352919427 -13.7810495278404 0 0 TRUE SolobacteriumSolobacterium moorei (SP15) 8.57471056257986 0.97112998724329 8.82962185826489 1.05030201120794e-18 7.87726508405956e-17 TRUE PorphyromonasPorphyromonas sp._Oral_Taxon_B43 (SP17) 3.14256058310921 1.03061448298813 3.04921057774949 0 0 TRUE KingellaKingella oralis (SP18) -0.718309449269315 1.10722826552523 -0.648745585381689 0 0 TRUE FusobacteriumFusobacterium canifelinum (SP19) 3.23079143451824 1.11233618078143 2.90450988679391 0 0 TRUE PrevotellaPrevotella sp._HMT_300 (SP2) -1.2118603647493 1.23808368223387 -0.978819430494994 0 0 TRUE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP20) 3.49532130659192 0.546877754141766 6.39141248683126 1.64360339805404e-10 1.16695841261837e-08 TRUE CapnocytophagaCapnocytophaga gingivalis (SP21) -2.77719911637639 1.15147628178765 -2.4118595930303 0.015871392287294 0.7935696143647 FALSE NeisseriaNeisseria elongata (SP22) -1.07100879387016 1.26519624058078 -0.846515947105979 0 0 TRUE GemellaGemella moribillum (SP23) 6.46494714290954 1.25348147427945 5.15759289272772 2.50144758248203e-07 1.75101330773742e-05 TRUE PorphyromonasPorphyromonas catoniae (SP24) 5.04724001443711 1.253910610508 4.02519922244882 5.69271003668132e-05 0.00370026152384286 TRUE LeptotrichiaLeptotrichia sp._HMT_223 (SP25) -1.36868574490819 1.30238847340088 -1.05090437520089 0 0 TRUE VeillonellaVeillonella atypica (SP26) 3.89669198724615 1.63999039069734 2.37604562157784 0 0 TRUE GemellaGemella morbillorum (SP27) -1.18861591874441 1.53531857322355 -0.774181944694899 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP28) -2.89809373736961 0.205053998674354 -14.1333197894476 0 0 TRUE PorphyromonasPorphyromonas endodontalis (SP29) 6.19035595105794 1.20078102788659 5.15527461485058 2.53259496195423e-07 1.75101330773742e-05 TRUE VeillonellaVeillonella parvula (SP3) 2.53433687361152 0.229397351084323 11.0478035671822 2.24643854319009e-28 1.77468644912017e-26 TRUE PorphyromonasPorphyromonas pasteri (SP30) -2.30072180580493 0.812189518217689 -2.83274008614856 0.00461508944941833 0.244599740819171 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_869 (SP31) -1.60181328509612 1.46450467742117 -1.09375771193625 0 0 TRUE PeptostreptococcusPeptostreptococcus stomatis (SP32) 7.77439033763912 0.303585829081526 25.6085416146066 0 0 TRUE PrevotellaPrevotella maculosa (SP33) -1.70043241066283 0.451649530929612 -3.76493784276251 0.000166590517630784 0.0106617931283702 TRUE StreptococcusStreptococcus cristatus (SP35) -1.34444941842028 1.2414211324673 -1.08299221211758 0.278811879820041 1 FALSE PrevotellaPrevotella denticola (SP36) -3.68264823270095 0.204049621947922 -18.047807183102 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP37) -1.57158352814867 1.38705533686512 -1.13303592609405 0 0 TRUE CapnocytophagaCapnocytophaga granulosa (SP38) 0.217068653327105 1.80901398608439 0.119992799943437 0.904488851561153 1 FALSE CampylobacterCampylobacter gracilis (SP39) 0.647396713765627 0.963716473306512 0.671770932320383 0 0 TRUE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP4) 4.48089961208401 1.08857083149985 4.11631423736584 0 0 TRUE LautropiaLautropia mirabilis (SP40) -3.10394981567965 0.185766237755712 -16.7089017529732 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP41) -2.64710210724691 0.212623114168921 -12.449738202705 0 0 TRUE PrevotellaPrevotella saccharolytica (SP42) 3.29413930214753 1.09852684864588 2.99868802133341 0 0 TRUE PrevotellaPrevotella intermedia (SP43) 5.61197893205881 1.53411492758864 3.65812158602736 0 0 TRUE StreptococcusStreptococcus vestibularis (SP44) 3.58381858448873 1.33233499472895 2.68987799514928 0 0 TRUE CardiobacteriumCardiobacterium valvarum (SP45) -2.07239486515952 0.138109556712966 -15.0054414370946 0 0 TRUE SelenomonasSelenomonas artemidis (SP46) -1.05104978117718 0.100674706460269 -10.4400580655477 0 0 TRUE LeptotrichiaLeptotrichia wadei (SP48) -4.02232916414173 0.218109806151896 -18.4417621339799 0 0 TRUE CapnocytophagaCapnocytophaga ochracea (SP49) -1.72388915315433 1.21616433028133 -1.41748044259409 0.156342508378355 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP5) 2.0576734749174 0.582485204441471 3.53257638001371 0.000411531327380355 0.0251034109702016 TRUE ArachniaArachnia propionica (SP50) 0.166848561697941 1.53959614486769 0.108371641650401 0.913700895311828 1 FALSE DialisterDialister invisus (SP51) -3.01234634588937 0.369853107460341 -8.14471011633281 0 0 TRUE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP52) -2.74055893372101 0.21468549664487 -12.7654591323158 0 0 TRUE CapnocytophagaCapnocytophaga sp._HMT_864 (SP55) -0.637558150097106 1.12082821149285 -0.568827714684244 0 0 TRUE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP56) 0.776638416660992 0.247187210393396 3.14190372319417 0.00167853220003703 0.0990333998021847 FALSE SelenomonasSelenomonas sp._Oral_Taxon_137 (SP57) -2.88327799308051 0.311317922911044 -9.2615226457886 0 0 TRUE SelenomonasSelenomonas sp._HMT_137 (SP58) 0.617878914651811 0.987777371525208 0.625524467823915 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_G00 (SP59) 0.215990153041055 1.60856057284645 0.134275424057452 0 0 TRUE NeisseriaNeisseria flavescens|subflava (SP6) 9.20045392020286 0.432029886901953 21.2958737326681 0 0 TRUE CapnocytophagaCapnocytophaga leadbetteri (SP60) -3.62845552825014 0.250337352719233 -14.4942633963204 0 0 TRUE ActinomycesActinomyces naeslundii (SP61) -1.56604044249149 1.4108137061824 -1.11002638805454 0 0 TRUE PrevotellaPrevotella sp._HMT_317 (SP62) -4.35274040024627 0.230933638685252 -18.8484467876886 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215 (SP63) -1.48849468440075 1.38259836854784 -1.0765922470776 0 0 TRUE StreptococcusStreptococcus intermedius (SP64) 0.708170566030278 1.15281723756109 0.614295608147297 0 0 TRUE BergeyellaBergeyella sp._HMT_322 (SP65) -2.21670350753539 0.200276031777239 -11.0682416056703 0 0 TRUE PrevotellaPrevotella oris (SP66) -3.39565555402523 0.146010476500596 -23.2562459585657 0 0 TRUE CapnocytophagaCapnocytophaga sp._HMT_380 (SP67) -1.9917708269048 0.258266539130725 -7.71207464044209 0 0 TRUE ActinomycesActinomyces sp._HMT_169 (SP68) 0.41327543521067 1.1546043879237 0.357936830600353 0 0 TRUE StreptococcusStreptococcus sanguinis (SP69) 0.295916356980636 1.25032411786336 0.236671717959275 0 0 TRUE FusobacteriumFusobacterium nucleatum (SP7) 2.16368953084348 0.515038067988507 4.20102836144485 2.65705299223395e-05 0.00178022550479674 TRUE HaemophilusHaemophilus parainfluenzae (SP70) 0.832395661125336 1.05273598755317 0.790697450231602 0 0 TRUE Lachnospiraceae_[G-8]Lachnospiraceae_[G-8] bacterium_HMT_500 (SP71) 2.92146251063912 0.800229734508409 3.65077975068474 0 0 TRUE SelenomonasSelenomonas noxia (SP72) -1.80288236978824 1.53704755459988 -1.1729515878626 0 0 TRUE PrevotellaPrevotella melaninogenica (SP74) -1.35244787128652 1.39504924326799 -0.969462460062216 0 0 TRUE CatonellaCatonella morbi (SP77) 0.782551749801681 0.853578065936519 0.916789900104907 0 0 TRUE LeptotrichiaLeptotrichia buccalis (SP78) -3.72240168908988 0.184087760968574 -20.2207994138477 0 0 TRUE CapnocytophagaCapnocytophaga endodontalis (SP8) 0.733261758302393 1.74907298557463 0.419228793966818 0.675048930446267 1 FALSE LeptotrichiaLeptotrichia sp._HMT_225 (SP80) -1.19674388337817 1.17180885701525 -1.02127909019773 0.307122230152072 1 FALSE EikenellaEikenella corrodens (SP81) 0.715661517980964 1.14677518818188 0.624064354858941 0 0 TRUE TannerellaTannerella sp._HMT_286 (SP83) -3.06278283924242 0.152115838648288 -20.1345426384165 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_E83 (SP84) -2.56722691917291 0.160234326219373 -16.0217038367808 0 0 TRUE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP86) 1.75813155049069 1.34688882932125 1.30532788765995 0.191781221872563 1 FALSE CampylobacterCampylobacter concisus (SP87) -0.890793389734376 1.18191734833227 -0.753685011046937 0 0 TRUE SelenomonasSelenomonas sp._HMT_138 (SP89) 0.298073861815841 1.24856427720048 0.238733293318451 0 0 TRUE CapnocytophagaCapnocytophaga sputigena (SP90) 6.63668936719971 0.384931156495229 17.2412371802436 0 0 TRUE PeptidiphagaPeptidiphaga sp._HMT_183 (SP91) -1.77510745451527 1.48353399150121 -1.19653979260631 0 0 TRUE AggregatibacterAggregatibacter segnis (SP93) -1.27549267215048 1.33110254607759 -0.958222697348917 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_212 (SP94) 0.381227481693036 1.41716581660071 0.269006969563709 0 0 TRUE CampylobacterCampylobacter showae (SP95) 0.52912292200249 1.06013675759368 0.499108174688239 0 0 TRUE ParvimonasParvimonas micra (SP96) -0.253222696519137 0.843913369712288 -0.300057690288124 0 0 TRUE AlloprevotellaAlloprevotella tannerae (SP98) 0.76452934271159 0.868261257731299 0.880529144775211 0 0 TRUE ActinomycesActinomyces sp._HMT_448_nov_96.718% (SPN10) -0.411954563017022 0.908004050801492 -0.453692428633321 0 0 TRUE BergeyellaBergeyella zoohelcum_nov_92.673% (SPN11) 9.49363261283476 0.365727359124032 25.9582237313974 0 0 TRUE BulleidiaBulleidia extructa_nov_96.008% (SPN12) 3.61947595767279 0.84799638205634 4.26826816040863 0 0 TRUE PrevotellaPrevotella sp._HMT_305_nov_93.688% (SPN2) 3.6382602698565 1.43052896822107 2.54329716537012 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215_nov_97.292% (SPN9) 6.50710081345675 0.362010642425819 17.9748881686265 0 0 TRUE StreptococcusStreptococcus pneumoniae_sp._str._C300_sp._str._M334 (SPP1) -2.19255538917961 0.149982622959768 -14.6187294628642 0 0 TRUE GranulicatellaGranulicatella adiacens_paradiacens (SPP5) -0.800538426852269 1.36504922503788 -0.586453889111621 0 0 TRUE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP6) -0.126248030121788 0.864059520876495 -0.14611033970637 0 0 TRUE