GroupDynamic Day 3 MR...1 GroupDynamic Day 3 MR...2 GroupDynamic Day 3 MR...3 GroupDynamic Day 3 MR...4 GroupDynamic Day 3 MR...5 GroupDynamic Day 3 MR...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance StreptococcusStreptococcus oralis (SP1) 2.96244329214134 0.373858226481215 7.92397513898277 2.30035635473217e-15 1.5872458847652e-13 TRUE StreptococcusStreptococcus sp._str._C300 (SP10) 3.86498755383516 0.365005338909221 10.5888521120958 3.35682870574907e-26 2.48405324225431e-24 TRUE PrevotellaPrevotella nanceiensis (SP101) 3.1025797674552 0.932927024724634 3.32564036117506 0 0 TRUE SelenomonasSelenomonas sputigena (SP102) -3.06635616478121 0.203588659451115 -15.0615273613385 0 0 TRUE ActinomycesActinomyces sp._HMT_175 (SP103) 0.557156566328743 1.28557315765019 0.433391567810216 0 0 TRUE StreptococcusStreptococcus cristatus_clade_578 (SP104) 3.81028530251603 0.892951420033026 4.26706897714 0 0 TRUE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP105) 3.28911836343368 1.14456827422574 2.8736759855227 0 0 TRUE ActinomycesActinomyces odontolyticus (SP106) 0.605550569610243 1.30286856066625 0.464782548210835 0 0 TRUE LeptotrichiaLeptotrichia sp._AF189244.1 (SP108) 0.204747542160325 1.57107999303206 0.130322799009857 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_392 (SP109) -1.70735739303972 1.44857042702116 -1.17864990282228 0 0 TRUE LeptotrichiaLeptotrichia hofstadii (SP11) 0.342258300604077 1.51675485115306 0.22565169337938 0 0 TRUE ActinomycesActinomyces sp._HMT_171 (SP115) -1.15673128583881 1.22469971637123 -0.944501962706571 0 0 TRUE RothiaRothia dentocariosa (SP119) -3.02804729568124 0.208078282145941 -14.5524427847662 0 0 TRUE GranulicatellaGranulicatella adiacens (SP12) -2.49190499302991 0.222010351011567 -11.2242739209041 0 0 TRUE OttowiaOttowia sp._HMT_894 (SP120) 0.674763691202991 1.1905421158608 0.566770114398781 0 0 TRUE PrevotellaPrevotella sp._HMT_292 (SP121) 0.319418318458492 1.53532379982026 0.208046223536616 0 0 TRUE LachnoanaerobaculumLachnoanaerobaculum orale (SP125) 3.49546476623575 1.24904642156198 2.7985066894988 0 0 TRUE GranulicatellaGranulicatella paradiacens (SP13) -1.56082574019352 1.4499635217053 -1.07645862590932 0 0 TRUE StreptococcusStreptococcus mitis (SP14) -3.49176470470076 0.253061628606089 -13.7980804278154 0 0 TRUE SolobacteriumSolobacterium moorei (SP15) 8.64124581735319 0.963653985563216 8.9671665834524 3.04239785177513e-19 2.16010247476034e-17 TRUE KingellaKingella oralis (SP18) -0.703522581159567 1.10605831160619 -0.63606283120637 0 0 TRUE FusobacteriumFusobacterium canifelinum (SP19) 3.26805872955983 1.12760436784775 2.89823170497073 0 0 TRUE PrevotellaPrevotella sp._HMT_300 (SP2) -1.19707349663955 1.23691946351606 -0.967786126702829 0 0 TRUE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP20) 3.62093444321162 0.46332804344915 7.81505564881488 5.49387523369206e-15 3.7358351589106e-13 TRUE CapnocytophagaCapnocytophaga gingivalis (SP21) -3.03432874915073 0.932186738826034 -3.25506534556807 0.00113366278524598 0.066886104329513 FALSE NeisseriaNeisseria elongata (SP22) -1.05622192576041 1.26403305591668 -0.835596759765463 0 0 TRUE GemellaGemella moribillum (SP23) 1.65838698103524 1.65048838394275 1.0047856120463 0.315000093447092 1 FALSE PorphyromonasPorphyromonas catoniae (SP24) 2.62729777187386 1.98762231049418 1.32182948339951 0.186224938177088 1 FALSE LeptotrichiaLeptotrichia sp._HMT_223 (SP25) -1.35389887679844 1.3012266344908 -1.04047891498029 0 0 TRUE VeillonellaVeillonella atypica (SP26) 7.61407897607096 0.301685524256308 25.2384631143327 0 0 TRUE GemellaGemella morbillorum (SP27) 3.71054483361932 1.56799727967185 2.36642300450665 0.0179609097771146 0.933967308409957 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP28) -2.88330686925986 0.20358375084009 -14.1627554132482 0 0 TRUE PorphyromonasPorphyromonas endodontalis (SP29) 5.25875475906202 1.23478257093661 4.25885081538943 2.05480543028089e-05 0.00127397936677415 TRUE VeillonellaVeillonella parvula (SP3) 2.54076995608798 0.407002772588564 6.24263549834935 4.30258767090021e-10 2.83970786279414e-08 TRUE PorphyromonasPorphyromonas pasteri (SP30) 0.0198569030911924 1.39780320839549 0.0142057930414867 0.98866579827511 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_869 (SP31) -1.58702641698637 1.46334787897227 -1.08451752299731 0 0 TRUE PeptostreptococcusPeptostreptococcus stomatis (SP32) 7.87619474012699 0.276955306777718 28.4385045073296 0 0 TRUE PrevotellaPrevotella maculosa (SP33) -2.14774366292638 0.14466055028475 -14.8467820611685 0 0 TRUE StreptococcusStreptococcus cristatus (SP35) -1.3623226864306 1.267433459897 -1.07486722540946 0.282434177424894 1 FALSE PrevotellaPrevotella denticola (SP36) -3.6678613645912 0.202577097935464 -18.1060021195471 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP37) -1.55679666003892 1.38589628267208 -1.12331397342183 0 0 TRUE CapnocytophagaCapnocytophaga granulosa (SP38) -1.16469605923862 1.36693522238436 -0.852049197479181 0 0 TRUE CampylobacterCampylobacter gracilis (SP39) 0.662183581875376 0.962538344360296 0.687955535231652 0 0 TRUE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP4) 3.28911836343368 1.0826599087831 3.03799774679994 0 0 TRUE LautropiaLautropia mirabilis (SP40) -3.08916294756991 0.184246446805928 -16.7664723044771 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP41) -2.63231523913717 0.211169122750042 -12.4654362572363 0 0 TRUE PrevotellaPrevotella intermedia (SP43) 7.78473140678348 0.373358199964479 20.8505703303801 0 0 TRUE CardiobacteriumCardiobacterium valvarum (SP45) -2.05760799704977 0.136375530832327 -15.0878092608826 0 0 TRUE SelenomonasSelenomonas artemidis (SP46) -1.03626291306743 0.0984941156920444 -10.5210641852702 0 0 TRUE LeptotrichiaLeptotrichia wadei (SP48) -4.00754229603199 0.216666690599699 -18.4963470154999 0 0 TRUE CapnocytophagaCapnocytophaga ochracea (SP49) -0.316646319033325 1.17396682866281 -0.269723395331363 0.787373060523597 1 FALSE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP5) 1.87340733471468 0.440503835281311 4.25287406071799 2.11044278148391e-05 0.00128737009670518 TRUE ArachniaArachnia propionica (SP50) -1.05622192576041 1.17981407791467 -0.895244382595679 0 0 TRUE DialisterDialister invisus (SP51) -2.99755947777962 0.368563569287301 -8.13308673881161 0 0 TRUE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP52) -2.72577206561126 0.213235677660995 -12.7829080738765 0 0 TRUE CapnocytophagaCapnocytophaga sp._HMT_864 (SP55) -0.622771281987357 1.1196589188023 -0.556215175469271 0 0 TRUE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP56) -0.745734970078973 1.05176007365142 -0.709035253154254 0.478302600392417 1 FALSE SelenomonasSelenomonas sp._Oral_Taxon_137 (SP57) -2.86849112497075 0.309990154951995 -9.2534910517238 0 0 TRUE SelenomonasSelenomonas sp._HMT_137 (SP58) 0.63266578276156 0.986600787448453 0.641258136837454 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_G00 (SP59) 0.230777021150804 1.60740737446115 0.1435709608015 0 0 TRUE NeisseriaNeisseria flavescens|subflava (SP6) 9.84213623257073 0.246351540732749 39.9515919539055 0 0 TRUE CapnocytophagaCapnocytophaga leadbetteri (SP60) -3.61366866014039 0.248946174148262 -14.5158634090445 0 0 TRUE ActinomycesActinomyces naeslundii (SP61) -1.55125357438174 1.40965537122822 -1.10044880900936 0 0 TRUE PrevotellaPrevotella sp._HMT_317 (SP62) -4.33795353213653 0.22951338930151 -18.9006556233536 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215 (SP63) -1.473707816291 1.38143917657562 -1.06679167731735 0 0 TRUE StreptococcusStreptococcus intermedius (SP64) 0.722957434140027 1.15164943598231 0.627758249647708 0 0 TRUE BergeyellaBergeyella sp._HMT_322 (SP65) -2.20191663942564 0.198794686233346 -11.0763354954117 0 0 TRUE PrevotellaPrevotella oris (SP66) -1.65737402090276 1.48115358175768 -1.11897512946359 0.263150749341504 1 FALSE CapnocytophagaCapnocytophaga sp._HMT_380 (SP67) -1.97698395879506 0.256885691488054 -7.6959676007762 0 0 TRUE ActinomycesActinomyces sp._HMT_169 (SP68) 0.428062303320419 1.15343666710653 0.371119035425016 0 0 TRUE StreptococcusStreptococcus sanguinis (SP69) 0.310703225090385 1.24916037176284 0.248729652423983 0 0 TRUE FusobacteriumFusobacterium nucleatum (SP7) 1.90230233189189 0.354898015225047 5.3601379841068 8.315841073627e-08 5.40529669785755e-06 TRUE HaemophilusHaemophilus parainfluenzae (SP70) 0.847182529235085 1.05156320462312 0.805641092718446 0 0 TRUE SelenomonasSelenomonas noxia (SP72) -1.78809550167849 1.5358926561313 -1.16420603649636 0 0 TRUE PrevotellaPrevotella melaninogenica (SP74) -1.33766100317677 1.39389043390768 -0.959660078465937 0 0 TRUE CatonellaCatonella morbi (SP77) 0.79733861791143 0.852391686931363 0.935413413969198 0 0 TRUE LeptotrichiaLeptotrichia buccalis (SP78) -3.70761482098013 0.182562990679766 -20.3086880159827 0 0 TRUE CapnocytophagaCapnocytophaga endodontalis (SP8) 0.497946761612177 1.71681997797581 0.290040171945852 0.771785505072028 1 FALSE LeptotrichiaLeptotrichia sp._HMT_225 (SP80) -2.59812209595154 0.179150795582386 -14.5024312479636 0 0 TRUE EikenellaEikenella corrodens (SP81) 0.730448386090713 1.14560711161597 0.63760811074257 0 0 TRUE TannerellaTannerella sp._HMT_286 (SP83) -3.04799597113267 0.150465314282171 -20.2571335837354 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_E83 (SP84) -2.55244005106317 0.158622575178093 -16.091278610232 0 0 TRUE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP86) 0.662183581875376 0.962538344360296 0.687955535231652 0 0 TRUE CampylobacterCampylobacter concisus (SP87) -0.876006521624628 1.1807508301093 -0.741906335601336 0 0 TRUE SelenomonasSelenomonas sp._HMT_138 (SP89) 0.31286072992559 1.24740046374379 0.250810176057342 0 0 TRUE FusobacteriumFusobacterium periodonticum (SP9) 8.41409193415161 0.23599648049919 35.6534636294311 0 0 TRUE CapnocytophagaCapnocytophaga sputigena (SP90) 7.21805914493646 0.236253894454469 30.5521276658892 0 0 TRUE PeptidiphagaPeptidiphaga sp._HMT_183 (SP91) -1.76032058640553 1.48237771003394 -1.1874980138262 0 0 TRUE AggregatibacterAggregatibacter segnis (SP93) -1.26070580404073 1.3299416927727 -0.947940658520428 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_212 (SP94) 0.396014349802785 1.41600766971471 0.279669636169817 0 0 TRUE CampylobacterCampylobacter showae (SP95) 0.543909790112239 1.05896437676162 0.513624255969355 0 0 TRUE ParvimonasParvimonas micra (SP96) -0.238435828409388 0.842726157752195 -0.28293393555668 0 0 TRUE AlloprevotellaAlloprevotella tannerae (SP98) 0.779316210821338 0.867076106625631 0.89878639817925 0 0 TRUE LachnoanaerobaculumLachnoanaerobaculum gingivalis (SP99) 3.23773480349126 1.10319104728824 2.93488132581384 0 0 TRUE ActinomycesActinomyces sp._HMT_448_nov_96.718% (SPN10) -0.397167694907273 0.90682201283379 -0.437977562615774 0 0 TRUE BergeyellaBergeyella zoohelcum_nov_92.673% (SPN11) 8.42599832303462 0.260598460309722 32.3332621114503 0 0 TRUE BulleidiaBulleidia extructa_nov_96.008% (SPN12) 3.22147141543478 0.613048978158101 5.25483530714569 0 0 TRUE PrevotellaPrevotella sp._HMT_305_nov_93.688% (SPN2) 7.03256702953812 0.305141668907808 23.0468918083517 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215_nov_97.292% (SPN9) 5.71719598017269 0.255120253198828 22.4098083491514 0 0 TRUE StreptococcusStreptococcus pneumoniae_sp._str._C300_sp._str._M334 (SPP1) -2.17776852106987 0.14832087659578 -14.682818569128 0 0 TRUE LachnoanaerobaculumLachnoanaerobaculum gingivalis_umeaense (SPP4) 3.4219980777796 1.24305486266753 2.752893842864 0 0 TRUE GranulicatellaGranulicatella adiacens_paradiacens (SPP5) -0.785751558742521 1.36388948149929 -0.576110872179149 0 0 TRUE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP6) -0.111461162012038 0.862874022910161 -0.129174316357468 0 0 TRUE