GroupDynamic Day 3 LR...1 GroupDynamic Day 3 LR...2 GroupDynamic Day 3 LR...3 GroupDynamic Day 3 LR...4 GroupDynamic Day 3 LR...5 GroupDynamic Day 3 LR...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance StreptococcusStreptococcus oralis (SP1) 2.69660908027958 0.57303844890581 4.70580828464238 2.52862067117212e-06 0.000159303102283844 TRUE StreptococcusStreptococcus sp._str._C300 (SP10) 3.51407588759255 0.443198913360956 7.9288910276063 2.21111459210884e-15 1.48144677671292e-13 TRUE PrevotellaPrevotella nanceiensis (SP101) 2.95063279790869 0.905574150964098 3.25830059831917 0 0 TRUE SelenomonasSelenomonas sputigena (SP102) -3.1669195743853 0.197992797285829 -15.9951251651515 0 0 TRUE ActinomycesActinomyces sp._HMT_175 (SP103) 0.456593156724652 1.28213388123137 0.356119718391763 0 0 TRUE StreptococcusStreptococcus cristatus_clade_578 (SP104) 4.31633896094363 1.06804821245651 4.04133344412987 0 0 TRUE ActinomycesActinomyces odontolyticus (SP106) 0.50498716000615 1.30100105855876 0.388152766428623 0 0 TRUE LeptotrichiaLeptotrichia sp._AF189244.1 (SP108) 0.104184132556233 1.56758429708207 0.066461582161906 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_392 (SP109) -1.80792080264381 1.43978033346029 -1.25569210846126 0 0 TRUE LeptotrichiaLeptotrichia hofstadii (SP11) 0.241694890999986 1.51488258454824 0.159546946717367 0 0 TRUE ActinomycesActinomyces sp._HMT_171 (SP115) -1.2572946954429 1.21591840391667 -1.03402883893603 0 0 TRUE RothiaRothia dentocariosa (SP119) -3.12861070528533 0.204652806704344 -15.2874067825767 0 0 TRUE GranulicatellaGranulicatella adiacens (SP12) -2.592468402634 0.209537132241393 -12.3723579439247 0 0 TRUE OttowiaOttowia sp._HMT_894 (SP120) 0.5742002815989 1.18712749320808 0.483688807549379 0 0 TRUE PrevotellaPrevotella sp._HMT_292 (SP121) 0.218854908854399 1.53345114915325 0.142720496166603 0 0 TRUE GranulicatellaGranulicatella paradiacens (SP13) -1.66138914979762 1.44311065012432 -1.15125555317223 0 0 TRUE StreptococcusStreptococcus mitis (SP14) -3.59232811430485 0.249506012478999 -14.397761715691 0 0 TRUE SolobacteriumSolobacterium moorei (SP15) 8.5323292001763 0.963438370600739 8.85612350570601 8.28450882604246e-19 5.79915617822972e-17 TRUE StreptococcusStreptococcus oralis_subsp._tigurinus_clade_070 (SP16) 2.58442870168599 0.616651995375494 4.19106517301102 0 0 TRUE KingellaKingella oralis (SP18) -0.80408599076366 1.0993984676697 -0.731387221657687 0 0 TRUE FusobacteriumFusobacterium canifelinum (SP19) 4.39585127040595 1.08333075112044 4.05771853689144 0 0 TRUE PrevotellaPrevotella sp._HMT_300 (SP2) -1.29763690624364 1.2273547013453 -1.05726315695154 0 0 TRUE StreptococcusStreptococcus sp._Oral_Taxon_71 (SP20) 3.29567221705391 0.676082972974339 4.8746564383289 1.0899798103079e-06 6.97587078597055e-05 TRUE CapnocytophagaCapnocytophaga gingivalis (SP21) -4.18005689739788 0.216482232927584 -19.3090067525133 0 0 TRUE NeisseriaNeisseria elongata (SP22) -1.1567853353645 1.25770689166321 -0.919757491218608 0 0 TRUE GemellaGemella moribillum (SP23) 1.4790273120764 1.62232661906706 0.911670495135518 0.361942200280905 1 FALSE PorphyromonasPorphyromonas catoniae (SP24) 4.29006172549105 1.25401436995702 3.42106265148945 0.000623769608751495 0.0343073284813322 TRUE LeptotrichiaLeptotrichia sp._HMT_223 (SP25) -1.45446228640253 1.29231391442412 -1.12547135039606 0 0 TRUE VeillonellaVeillonella atypica (SP26) 7.66383015117405 0.25001193817516 30.653856800249 0 0 TRUE GemellaGemella morbillorum (SP27) 2.54673354447179 2.18322838408209 1.16649891648534 0.243412786412783 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP28) -2.98387027886395 0.19823474071072 -15.0522066322283 0 0 TRUE PorphyromonasPorphyromonas endodontalis (SP29) 4.90578545239251 1.20248453250046 4.07970773827035 4.50923574583497e-05 0.00275063380495933 TRUE VeillonellaVeillonella parvula (SP3) 2.09925971966321 0.378781310335823 5.542141764603 2.98794243760118e-08 1.97204200881678e-06 TRUE PorphyromonasPorphyromonas pasteri (SP30) -1.48086507517288 1.54889366391593 -0.956079238796122 0.339032202901665 1 FALSE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_869 (SP31) -1.68758982659046 1.45658460846422 -1.15859375197559 0 0 TRUE PeptostreptococcusPeptostreptococcus stomatis (SP32) 7.84025654863377 0.2997255869871 26.1581155864788 0 0 TRUE PrevotellaPrevotella maculosa (SP33) -2.24830707253047 0.139458706220102 -16.1216687969416 0 0 TRUE StreptococcusStreptococcus cristatus (SP35) -0.134315855628256 1.23804375863691 -0.108490394375186 0.91360669971929 1 FALSE PrevotellaPrevotella denticola (SP36) -3.76842477419529 0.199543155521877 -18.8852620093108 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP37) -1.65736006964301 1.3770624681497 -1.20354748457412 0 0 TRUE CapnocytophagaCapnocytophaga granulosa (SP38) -1.26525946884271 1.36142788729947 -0.929362091555567 0 0 TRUE CampylobacterCampylobacter gracilis (SP39) 0.561620172271284 0.951550627650574 0.590215755159504 0 0 TRUE Saccharibacteria_(TM7)_[G-3]Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP4) 4.382872248592 1.07803967456178 4.06559457134416 0 0 TRUE LautropiaLautropia mirabilis (SP40) -3.189726357174 0.179168586831843 -17.8029330563827 0 0 TRUE Saccharibacteria_(TM7)_[G-1]Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP41) -1.96535028440991 0.711782774635146 -2.76116584222951 0.00575954216753769 0.29949619271196 FALSE PrevotellaPrevotella intermedia (SP43) 5.49309349535751 1.52799911156852 3.59495856625123 0 0 TRUE CardiobacteriumCardiobacterium valvarum (SP45) -2.15817140665386 0.13064269313011 -16.5196487836062 0 0 TRUE SelenomonasSelenomonas artemidis (SP46) -1.13682632267152 0.0878923174862837 -12.9343081987676 0 0 TRUE LeptotrichiaLeptotrichia wadei (SP48) -4.10810570563608 0.213722451955775 -19.2216852653654 0 0 TRUE CapnocytophagaCapnocytophaga ochracea (SP49) -3.21122990111233 0.190925371098848 -16.8192937514301 0 0 TRUE FusobacteriumFusobacterium nucleatum_ss_polymorphum (SP5) 1.49756903169488 0.498827052444888 3.00218086480049 0.00268052865230967 0.142068018572413 FALSE ArachniaArachnia propionica (SP50) -1.1567853353645 1.17088525272125 -0.987957899953072 0 0 TRUE DialisterDialister invisus (SP51) -3.09812288738371 0.365510329157522 -8.47615686956011 0 0 TRUE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP52) -2.82633547521535 0.209625065748865 -13.4828125878866 0 0 TRUE CapnocytophagaCapnocytophaga sp._HMT_864 (SP55) -0.72333469159145 1.11393416467648 -0.649351384066338 0 0 TRUE Absconditabacteria_(SR1)_[G-1]Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP56) 0.0229378574242749 0.202971021063695 0.113010504179691 0.910022227435425 1 FALSE SelenomonasSelenomonas sp._Oral_Taxon_137 (SP57) -2.96905453457485 0.308107221542005 -9.63643279672389 0 0 TRUE SelenomonasSelenomonas sp._HMT_137 (SP58) 0.532102373157469 0.975623817399878 0.545397071768469 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_G00 (SP59) 0.130213611546712 1.60553327885629 0.0811030286706175 0 0 TRUE NeisseriaNeisseria flavescens|subflava (SP6) 9.84428964907607 0.319184384298841 30.842015253037 0 0 TRUE CapnocytophagaCapnocytophaga leadbetteri (SP60) -3.71423206974448 0.246444221533389 -15.0712889376523 0 0 TRUE ActinomycesActinomyces naeslundii (SP61) -1.65181698398583 1.40137052215973 -1.17871537745787 0 0 TRUE PrevotellaPrevotella sp._HMT_317 (SP62) -4.43851694174062 0.226497920367534 -19.5962812132594 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215 (SP63) -1.57427122589509 1.37321153485754 -1.14641567299274 0 0 TRUE StreptococcusStreptococcus intermedius (SP64) 0.622394024535936 1.14824604892019 0.542038899346733 0 0 TRUE BergeyellaBergeyella sp._HMT_322 (SP65) -2.30248004902973 0.195035112230921 -11.8054642709852 0 0 TRUE PrevotellaPrevotella oris (SP66) -2.10038718672239 1.16982008035211 -1.79547882789821 0.0725774430571882 1 FALSE CapnocytophagaCapnocytophaga sp._HMT_380 (SP67) -2.07754736839915 0.254618283849739 -8.15945868846244 0 0 TRUE ActinomycesActinomyces sp._HMT_169 (SP68) 0.327498893716328 1.1425215022297 0.286645715706177 0 0 TRUE StreptococcusStreptococcus sanguinis (SP69) 0.210139815486294 1.23827300600771 0.169703946114275 0 0 TRUE FusobacteriumFusobacterium nucleatum (SP7) 1.75505088945981 0.318419959302577 5.5117489911871 3.55285364190928e-08 2.30935486724103e-06 TRUE HaemophilusHaemophilus parainfluenzae (SP70) 0.746619119630993 1.04819244915825 0.712292022548497 0 0 TRUE SelenomonasSelenomonas noxia (SP72) -1.88865891128259 1.52842279035033 -1.23569140895216 0 0 TRUE PrevotellaPrevotella melaninogenica (SP74) -1.43822441278086 1.38645324121681 -1.03734072670104 0 0 TRUE CatonellaCatonella morbi (SP77) 0.696775208307339 0.841346710271 0.828166557022498 0 0 TRUE LeptotrichiaLeptotrichia buccalis (SP78) -3.80817823058422 0.178989704241841 -21.275962473455 0 0 TRUE CapnocytophagaCapnocytophaga endodontalis (SP8) 0.679815972137154 1.47756013929032 0.460093605708445 0.6454490335874 1 FALSE LeptotrichiaLeptotrichia sp._HMT_225 (SP80) -2.69868550555563 0.175469436684731 -15.3798037797568 0 0 TRUE EikenellaEikenella corrodens (SP81) 0.629884976486622 1.14220553690491 0.551463774368887 0 0 TRUE TannerellaTannerella sp._HMT_286 (SP83) -3.14855938073677 0.145845210630078 -21.5883632183354 0 0 TRUE SelenomonasSelenomonas sp._Oral_Taxon_E83 (SP84) -2.65300346066726 0.154185214717956 -17.2066009410843 0 0 TRUE Lachnospiraceae_[G-3]Lachnospiraceae_[G-3] bacterium_HMT_100 (SP86) 0.561620172271284 0.951550627650574 0.590215755159504 0 0 TRUE CampylobacterCampylobacter concisus (SP87) -0.976569931228719 1.17421083626946 -0.831681927183827 0 0 TRUE SelenomonasSelenomonas sp._HMT_138 (SP89) 0.212297320321499 1.23651262647324 0.171690378065131 0 0 TRUE FusobacteriumFusobacterium periodonticum (SP9) 8.57769617731546 0.402342595165978 21.3193837301191 0 0 TRUE CapnocytophagaCapnocytophaga sputigena (SP90) 6.69963768757133 0.25197611355453 26.5883840855473 0 0 TRUE PeptidiphagaPeptidiphaga sp._HMT_183 (SP91) -1.86088399600962 1.47387048211251 -1.2625831228687 0 0 TRUE AggregatibacterAggregatibacter segnis (SP93) -1.36126921364482 1.32317082530469 -1.02879324998067 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_212 (SP94) 0.295450940198693 1.4125398439706 0.209162907127767 0 0 TRUE CampylobacterCampylobacter showae (SP95) 0.443346380508147 1.04801668502721 0.423033704369543 0 0 TRUE ParvimonasParvimonas micra (SP96) -0.338999238013479 0.833450780781751 -0.406741760677827 0 0 TRUE AlloprevotellaAlloprevotella tannerae (SP98) 0.678752801217247 0.85603963836383 0.792898799072627 0 0 TRUE LachnoanaerobaculumLachnoanaerobaculum gingivalis (SP99) 3.42633824978874 1.28801108470479 2.66017761064071 0 0 TRUE ActinomycesActinomyces sp._HMT_448_nov_96.718% (SPN10) -0.497731104511365 0.897403160075192 -0.554634891713175 0 0 TRUE BergeyellaBergeyella zoohelcum_nov_92.673% (SPN11) 7.91277485507534 0.38023556068383 20.8101915582138 0 0 TRUE PrevotellaPrevotella sp._HMT_305_nov_93.688% (SPN2) 5.72436903812639 1.59648921863126 3.58559830615965 0 0 TRUE LeptotrichiaLeptotrichia sp._HMT_215_nov_97.292% (SPN9) 5.86742815743651 0.458127962607179 12.8074001945774 0 0 TRUE StreptococcusStreptococcus pneumoniae_sp._str._C300_sp._str._M334 (SPP1) -2.27833193067396 0.140243863074349 -16.2455018047109 0 0 TRUE GranulicatellaGranulicatella adiacens_paradiacens (SPP5) -0.886314968346611 1.36312450182811 -0.650208375799833 0 0 TRUE Atopobium_LancefieldellaAtopobium_Lancefieldella parvula_parvulum (SPP6) -0.212024571616131 0.85614872607613 -0.247649228642638 0 0 TRUE