GroupDynamic Day 3 LR...1 GroupDynamic Day 3 LR...2 GroupDynamic Day 3 LR...3 GroupDynamic Day 3 LR...4 GroupDynamic Day 3 LR...5 GroupDynamic Day 3 LR...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Prevotella oris (SP1) -2.09608852210289 1.18129464163443 -1.77439941588389 0.0759971064188829 1 FALSE Peptostreptococcus stomatis (SP10) 7.84455521325327 0.301240031189868 26.0408790367869 0 0 TRUE Leptotrichia sp._HMT_392 (SP103) -1.80362213802431 1.44017035973406 -1.25236721186052 0 0 TRUE Peptidiphaga sp._HMT_183 (SP105) -1.85658533139012 1.47435585733198 -1.25925184354735 0 0 TRUE Leptotrichia hofstadii (SP106) 0.245993555619485 1.51766484001385 0.162086877902001 0 0 TRUE Leptotrichia sp._HMT_212 (SP108) 0.299749604818192 1.41477930270214 0.211870221910717 0 0 TRUE Streptococcus sp._str._C300 (SP11) 3.51837455221205 0.452516121024575 7.77513637358563 7.5366168888232e-15 4.97416714662331e-13 TRUE Actinomyces odontolyticus (SP110) 0.50928582462565 1.30380544080758 0.390614894435629 0 0 TRUE Leptotrichia sp._HMT_223 (SP113) -1.45016362178303 1.29267631936801 -1.12183042270939 0 0 TRUE Selenomonas sp._HMT_137 (SP118) 0.536401037776968 0.975314172311563 0.549977692322116 0 0 TRUE Selenomonas sp._HMT_138 (SP119) 0.216595984940998 1.23619333430377 0.175212063461728 0 0 TRUE Granulicatella adiacens (SP12) -2.5881697380145 0.209542359302535 -12.3515347762107 0 0 TRUE Ottowia sp._HMT_894 (SP122) 0.578498946218399 1.18941117077476 0.486374233261635 0 0 TRUE Actinomyces sp._HMT_175 (SP124) 0.460891821344151 1.28439700929321 0.358839064564448 0 0 TRUE Fusobacterium nucleatum_ss_polymorphum (SP13) 1.50186769631437 0.501059097632039 2.99738634307224 0.0027230537617505 0.141598795611026 FALSE Parvimonas micra (SP14) -0.334700573393981 0.833769358237002 -0.401430647561458 0 0 TRUE Capnocytophaga sputigena (SP15) 6.70393635219083 0.250816192821772 26.7284830248364 0 0 TRUE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP16) -1.65306140502351 1.37744327910727 -1.20009399304984 0 0 TRUE Prevotella nanceiensis (SP17) 2.95493146252819 0.902147168074492 3.27544281808819 0 0 TRUE Capnocytophaga sp._HMT_380 (SP18) -2.07324870377965 0.257975627572313 -8.03660688139425 0 0 TRUE Capnocytophaga gingivalis (SP2) -4.17575823277838 0.219589247851905 -19.0162235793739 0 0 TRUE Leptotrichia sp._HMT_225 (SP20) -2.69438684093613 0.178837783900843 -15.0660938766164 0 0 TRUE Kingella oralis (SP21) -0.799787326144159 1.10057042939864 -0.726702539683141 0 0 TRUE Capnocytophaga granulosa (SP22) -1.26096080422322 1.36296586188245 -0.925159491875792 0 0 TRUE Solobacterium moorei (SP23) 8.5366278647958 0.965798922594519 8.83892875119701 9.66407215121285e-19 6.66820978433687e-17 TRUE Streptococcus cristatus (SP24) -0.130017191008758 1.24498481035182 -0.104432752855849 0.916825931758715 1 FALSE Selenomonas sp._Oral_Taxon_E83 (SP25) -2.64870479604776 0.157546984735864 -16.8121579761647 0 0 TRUE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_869 (SP26) -1.68329116197096 1.45767754332422 -1.15477608177474 0 0 TRUE Leptotrichia wadei (SP28) -4.10380704101658 0.217047196763032 -18.9074408802295 0 0 TRUE Streptococcus mitis (SP29) -3.58802944968535 0.252445904118426 -14.2130626449069 0 0 TRUE Veillonella parvula (SP3) 2.10355838428271 0.372603747968006 5.64556421065131 1.64640406783189e-08 1.07016264409073e-06 TRUE Streptococcus sp._Oral_Taxon_71 (SP30) 3.29997088167341 0.677450198898934 4.87116379482488 1.1094281784126e-06 6.9893975239994e-05 TRUE Granulicatella paradiacens (SP31) -1.65709048517812 1.44417369951344 -1.14743156293209 0 0 TRUE Lachnospiraceae_[G-3] bacterium_HMT_100 (SP32) 0.565918836890783 0.951242165195358 0.594926147722393 0 0 TRUE Alloprevotella tannerae (SP34) 0.683051465836746 0.855736594399363 0.798202940375802 0 0 TRUE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP35) 4.3871709132115 1.06989320475001 4.10056900420877 0 0 TRUE Fusobacterium periodonticum (SP36) 8.58199484193496 0.39977273901999 21.4671837378732 0 0 TRUE Streptococcus oralis (SP37) 2.70090774489908 0.57432086679492 4.70278532620952 2.56636212266717e-06 0.000159114451605364 TRUE Prevotella sp._HMT_300 (SP38) -1.29333824162414 1.22749783634671 -1.05363789925153 0 0 TRUE Streptococcus oralis_subsp._tigurinus_clade_070 (SP39) 2.58872736630549 0.613516103282062 4.21949375486128 0 0 TRUE Veillonella atypica (SP4) 7.66812881579355 0.253741996606887 30.2201800188145 0 0 TRUE Capnocytophaga ochracea (SP40) -3.20693123649283 0.194183640288845 -16.51494035091 0 0 TRUE Prevotella melaninogenica (SP41) -1.43392574816136 1.38731874332423 -1.03359502281751 0 0 TRUE Fusobacterium canifelinum (SP42) 4.40014993502544 1.0751736369742 4.09250169805922 0 0 TRUE Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP43) -2.82203681059585 0.212749032901741 -13.264628149446 0 0 TRUE Leptotrichia sp._HMT_215 (SP45) -1.56997256127559 1.37380359641929 -1.14279258357424 0 0 TRUE Actinomyces sp._HMT_171 (SP46) -1.2529960308234 1.21633583495884 -1.03013986335921 0 0 TRUE Streptococcus intermedius (SP47) 0.626692689155435 1.1505391263386 0.544694808554473 0 0 TRUE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP48) -1.96105161979041 0.708961861550922 -2.76608901852692 0.00567330456957598 0.289338533048375 FALSE Dialister invisus (SP49) -3.09382422276421 0.368315098300831 -8.39993863145206 0 0 TRUE Capnocytophaga endodontalis (SP5) 0.684114636756652 1.47990659705089 0.462268793260288 0.643888575639827 1 FALSE Porphyromonas catoniae (SP50) 4.29436039011055 1.25577379317521 3.41969263369662 0.000626919276218729 0.0338536409158114 TRUE Neisseria elongata (SP51) -1.15248667074501 1.25897246263307 -0.915418490039603 0 0 TRUE Capnocytophaga sp._HMT_864 (SP52) -0.71903602697195 1.11542836845245 -0.644627702960027 0 0 TRUE Arachnia propionica (SP53) -1.15248667074501 1.17125738871479 -0.983973874444132 0 0 TRUE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_348 (SP54) -2.97957161424445 0.200841633674932 -14.8354280919014 0 0 TRUE Lautropia mirabilis (SP55) -3.1854276925545 0.182026601126896 -17.4997921888013 0 0 TRUE Haemophilus parainfluenzae (SP58) 0.750917784250493 1.05051295369099 0.714810590019033 0 0 TRUE Leptotrichia buccalis (SP59) -3.80387956596472 0.182360807397509 -20.8590849111183 0 0 TRUE Neisseria flavescens|subflava (SP6) 9.84858831369558 0.316941816037284 31.0738053969408 0 0 TRUE Campylobacter showae (SP60) 0.447645045127646 1.04770383938282 0.427262961440845 0 0 TRUE Selenomonas noxia (SP61) -1.88436024666309 1.52926415110545 -1.23220062753773 0 0 TRUE Capnocytophaga leadbetteri (SP62) -3.70993340512498 0.249755099694307 -14.8542848961476 0 0 TRUE Prevotella intermedia (SP63) 5.49739215997701 1.51969295054886 3.61743611299345 0 0 TRUE Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP65) 0.0272365220437729 0.204021152002325 0.133498520993855 0.89379913387809 1 FALSE Campylobacter concisus (SP66) -0.972271266609221 1.17541313219302 -0.827174071805041 0 0 TRUE Aggregatibacter segnis (SP67) -1.35697054902532 1.32427441039952 -1.02468985156629 0 0 TRUE Streptococcus cristatus_clade_578 (SP68) 4.32063762556313 1.07488058106478 4.01964432298432 0 0 TRUE Porphyromonas pasteri (SP69) -1.47656641055338 1.56054256765146 -0.946187845920495 0.344052784199818 1 FALSE Gemella morbillorum (SP7) 0.914673187628563 1.62776591784137 0.561919362976673 0.57417096051149 1 FALSE Campylobacter gracilis (SP70) 0.565918836890783 0.951242165195358 0.594926147722393 0 0 TRUE Tannerella sp._HMT_286 (SP71) -3.14426071611727 0.149270204198414 -21.0642219792092 0 0 TRUE Selenomonas sputigena (SP72) -3.1626209097658 0.200516431909493 -15.7723777530278 0 0 TRUE Eikenella corrodens (SP73) 0.634183641106121 1.14450013263141 0.554114082667705 0 0 TRUE Bergeyella sp._HMT_322 (SP74) -2.29818138441023 0.198208775036784 -11.59475095885 0 0 TRUE Prevotella maculosa (SP75) -2.24400840791097 0.142796787815892 -15.7146980841346 0 0 TRUE Streptococcus sanguinis (SP76) 0.214438480105792 1.23795366356375 0.173220118343105 0 0 TRUE Catonella morbi (SP77) 0.701073872926838 0.841044621035495 0.83357512240394 0 0 TRUE Rothia dentocariosa (SP78) -3.12431204066584 0.207871717477072 -15.0300006108837 0 0 TRUE Prevotella denticola (SP79) -3.76412610957579 0.202929462399764 -18.5489384590227 0 0 TRUE Fusobacterium nucleatum (SP8) 1.75934955407931 0.317996765348933 5.53260204439126 3.15514770755642e-08 2.01929453283611e-06 TRUE Cardiobacterium valvarum (SP80) -2.15387274203436 0.133977979473839 -16.0763190375992 0 0 TRUE Actinomyces sp._HMT_169 (SP81) 0.331797558335826 1.14220513737138 0.290488588678046 0 0 TRUE Leptotrichia sp._AF189244.1 (SP82) 0.108482797175733 1.56980077687083 0.0691060921704837 0 0 TRUE Prevotella sp._HMT_317 (SP84) -4.43421827712112 0.229727704003786 -19.3020615269286 0 0 TRUE Actinomyces naeslundii (SP89) -1.64751831936633 1.40193990128116 -1.175170431957 0 0 TRUE Porphyromonas endodontalis (SP9) 4.91008411701201 1.20512338282062 4.07434142180517 4.61447431605722e-05 0.00267639510331319 TRUE Selenomonas sp._Oral_Taxon_137 (SP90) -2.96475586995535 0.311429298102544 -9.51983608484756 0 0 TRUE Prevotella sp._HMT_292 (SP92) 0.223153573473899 1.5362317705671 0.145260355728434 0 0 TRUE Selenomonas sp._Oral_Taxon_G00 (SP94) 0.134512276166212 1.60830791027877 0.0836358978940148 0 0 TRUE Selenomonas artemidis (SP96) -1.13252765805202 0.0912961306154686 -12.4049907747146 0 0 TRUE Lachnoanaerobaculum gingivalis (SP97) 3.43063691440824 1.28443828378213 2.670923903254 0 0 TRUE Actinomyces sp._HMT_448_nov_96.718% (SPN10) -0.493432439891866 0.897654887407516 -0.549690584671053 0 0 TRUE Bergeyella zoohelcum_nov_92.673% (SPN11) 7.91707351969484 0.374200728763037 21.1572904891597 0 0 TRUE Prevotella sp._HMT_305_nov_93.688% (SPN2) 5.72866770274589 1.60238585358432 3.57508629393579 0 0 TRUE Leptotrichia sp._HMT_215_nov_97.292% (SPN9) 5.87172682205601 0.462122248053794 12.7060033287393 0 0 TRUE Streptococcus pneumoniae_sp._str._C300_sp._str._M334 (SPP1) -2.27403326605446 0.142572158290063 -15.9500514920167 0 0 TRUE Atopobium_Lancefieldella parvula_parvulum (SPP2) -0.207725906996632 0.857348961221568 -0.242288632041567 0 0 TRUE Granulicatella adiacens_paradiacens (SPP5) -0.882016303727112 1.3663029768035 -0.645549573338861 0 0 TRUE