ComparisonHamlet + Amoxicillin...1 ComparisonHamlet + Amoxicillin...2 ComparisonHamlet + Amoxicillin...3 ComparisonHamlet + Amoxicillin...4 ComparisonHamlet + Amoxicillin...5 ComparisonHamlet + Amoxicillin...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Lachnospiraceae_[G-11] bacterium_MOT-178 (SP1) -1.48693513397473 1.58618300187678 -0.937429749414398 0.348537544135552 1 FALSE Alistipes sp._MOT-127 (SP10) 4.76174721772358 1.12047576203044 4.24975477300349 2.14004675455956e-05 0.00263225750810825 TRUE Turicimonas muris (SP11) 6.02358940112172 1.49914442943365 4.01801806607607 5.86896984604237e-05 0.00704276381525085 TRUE Bacteroides acidofaciens (SP19) 3.9469799167 0.9628051185143 4.09945880095711 0 0 TRUE Bacteroides caecimuris (SP2) 2.85302514057911 0.741196638486012 3.84921489445335 0.000118497017225516 0.0139217342319332 TRUE Blautia caecimuris (SP20) 4.52235606378139 1.51385994232664 2.98730149159706 0 0 TRUE Peptococcaceae_[G-1] bacterium_MOT-146 (SP21) -0.677574072643324 1.03795414102869 -0.652797696795928 0.51388670865934 1 FALSE Prevotella sp._MOT-128 (SP22) -1.0859424407842 1.5935541003305 -0.681459412365719 0.495580840402751 1 FALSE Lactobacillus taiwanensis (SP23) -3.92797666323454 0.600596705264532 -6.54012356179087 0 0 TRUE Flavonifractor plautii (SP28) 4.22201657438599 1.30186198893926 3.24306002499238 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) -2.02343626776132 1.37639020081791 -1.47010365705808 0.14153368204647 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183 (SP3) 0.649673697346244 1.38778268804569 0.468137917371725 0.639685965264779 1 FALSE Robinsoniella peoriensis (SP30) 3.83758587527776 1.52692656527167 2.51327468036748 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174 (SP31) -0.393090061876823 1.38149992690775 -0.284538604903648 0 0 TRUE Lawsonibacter asaccharolyticus (SP36) -0.0455843980606914 1.20239271291802 -0.0379114057919272 0 0 TRUE Eubacteriales_[G-1] bacterium_MOT-159 (SP37) 1.68590954309902 1.08892165204729 1.54823768994705 0.121565080158206 1 FALSE Bacteroides stercorirosoris (SP4) 0.700255175505322 1.51919325728667 0.460938838522757 0.644842486030231 1 FALSE Muribaculum intestinale (SP5) 6.68590261580426 0.973509872444026 6.86783237135448 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) -3.67633834436025 0.940089606295165 -3.91062545500154 9.20574298964555e-05 0.0109548341576782 TRUE Parabacteroides goldsteinii (SP8) 6.04974416574134 0.840550695128422 7.19735787597801 6.13904833946906e-13 7.8579818745204e-11 TRUE Akkermansia muciniphila (SP9) 3.77267620158488 1.53266622883273 2.46151192647999 0.0138352797774291 1 FALSE Anaerotaenia torta_nov_97.273% (SPN100) 0.0164555120192822 1.27060366147821 0.0129509401855005 0 0 TRUE Kineothrix alysoides_nov_95.227% (SPN102) -2.68850170558694 1.41718345936162 -1.89707386706164 0 0 TRUE Anaerotruncus rubiinfantis_nov_92.760% (SPN103) 1.03512872223898 1.47307531255976 0.702699117562588 0.48224327772689 1 FALSE Mediterraneibacter [Ruminococcus] gnavus_nov_93.424% (SPN105) 0.790651432119581 1.47788181994684 0.534989619229514 0.592657035523249 1 FALSE Alistipes putredinis_nov_95.887% (SPN106) -1.89084109474907 1.22689871069216 -1.54115501000269 0 0 TRUE Oscillibacter valericigenes_nov_95.260% (SPN107) -0.984387691209677 1.36341661288603 -0.722000657690358 0.470294073164872 1 FALSE Kineothrix alysoides_nov_97.279% (SPN108) -2.13136842201622 1.17724063630751 -1.81047812680116 0 0 TRUE Pseudobutyrivibrio ruminis_nov_91.176% (SPN109) -1.30045745796166 1.37329798431841 -0.946959416537046 0 0 TRUE Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 4.53864414537753 1.34620003417205 3.37144854417487 0 0 TRUE Saccharofermentans acetigenes_nov_88.764% (SPN111) 0.0484288710125091 1.34411689826826 0.0360302523351238 0.971258236733792 1 FALSE Lacrimispora indolis_nov_90.724% (SPN112) 3.32110016836811 1.57350666114544 2.11063623076785 0.0348035910139885 1 FALSE Lawsonibacter asaccharolyticus_nov_97.973% (SPN114) -2.16724881699354 1.26339587474998 -1.71541546106633 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) 1.56490255238929 1.36400320287287 1.14728656728465 0.25126320382049 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) 3.85341745217648 1.41283283103049 2.72744047812499 0 0 TRUE Alistipes putredinis_nov_95.879% (SPN119) 0.713227000489135 1.22355070449423 0.58291576954627 0.559950004251178 1 FALSE Odoribacter splanchnicus_nov_93.939% (SPN120) -1.65374172190808 1.08428776043417 -1.52518711568402 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) -2.50868673821148 0.987786128958865 -2.53970638447379 0.011094556547605 1 FALSE Ruthenibacterium lactatiformans_nov_97.045% (SPN122) 0.20581507575029 1.48265262562177 0.138815439431727 0.889595993209036 1 FALSE Lachnospiraceae_[G-11] bacterium_MOT-178_nov_97.978% (SPN124) -0.442603223228849 1.37057141480848 -0.322933353524447 0.746745715999494 1 FALSE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.388% (SPN125) 1.89686110400032 1.47004349067577 1.29034352795124 0.196931410077741 1 FALSE Enterocloster asparagiformis_nov_94.344% (SPN129) 1.8804670492386 1.12227810704317 1.67558026610089 0.0938204368473498 1 FALSE Prevotellamassilia timonensis_nov_94.168% (SPN13) 3.99003442940547 1.65383062553972 2.41260160973457 0.0158391218267935 1 FALSE Eisenbergiella massiliensis_nov_96.599% (SPN130) 1.77662739915561 1.18831558135686 1.49508045424011 0.134893446296806 1 FALSE Neglectibacter timonensis_nov_97.500% (SPN131) -0.497734943185905 1.06894829306352 -0.465630514044264 0 0 TRUE Mailhella massiliensis_nov_92.094% (SPN132) -0.405120940591428 0.954113498166081 -0.424604558441023 0.67112496942429 1 FALSE Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 3.58897671449256 1.16136123377784 3.09031902401101 0.00199941610466121 0.221935187617395 FALSE Neglectibacter timonensis_nov_97.727% (SPN134) -1.77995904996447 1.20147951696283 -1.48147265503448 0.138480666439849 1 FALSE Butyricicoccus pullicaecorum_nov_94.820% (SPN135) -0.711912330958808 1.13519873602679 -0.627125725536405 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_95.946% (SPN136) 0.765934313795442 1.56313437800316 0.489999020285059 0.624134592105479 1 FALSE Eubacterium coprostanoligenes_nov_95.701% (SPN137) 1.94084209859761 1.15325388590731 1.68292699666099 0.0923892246818118 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.405% (SPN138) -0.86866296089208 1.17495405030173 -0.739316538096962 0 0 TRUE Acetatifactor muris_nov_96.145% (SPN139) -1.05238586910763 1.26268117707506 -0.833453359576824 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) -2.11712186474666 1.22235802256167 -1.73199817538715 0.0832738873090191 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183_nov_95.425% (SPN140) 0.954054274094869 1.07903393755922 0.884174483198314 0.376602030563551 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.281% (SPN141) 1.63037207786677 1.12448730703531 1.44988037451949 0.147091881009568 1 FALSE Petrocella atlantisensis_nov_87.810% (SPN142) 0.189908097206301 1.18951003667512 0.159652370598844 0.873154922272692 1 FALSE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_96.396% (SPN143) 1.03730789600917 1.23958492126903 0.836818743283208 0.402694460132561 1 FALSE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 3.09439215310867 1.72514426129985 1.79370051683512 0.0728609827847265 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.208% (SPN146) 1.81465205874085 1.46392000531842 1.23958416590266 0.215129240260085 1 FALSE Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) -0.768400423199505 1.05561027325873 -0.727920561844672 0 0 TRUE Alistipes putredinis_nov_96.529% (SPN150) 1.86762653505392 1.29736003851285 1.4395591660082 0.149992159381707 1 FALSE Clostridium oryzae_nov_88.889% (SPN152) -1.29896463664743 1.05200902334954 -1.23474666834282 0 0 TRUE Eubacteriales_[G-3] bacterium_MOT-163_nov_95.023% (SPN156) 1.76016995878012 1.03116627744384 1.70697005641361 0.0878276181072108 1 FALSE Phocea massiliensis_nov_95.682% (SPN158) -0.782649499403822 1.42084684478023 -0.55083311919159 0.581748078326461 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 3.54769980907804 1.08134813149174 3.28081189189638 0 0 TRUE Muribaculum intestinale_nov_93.737% (SPN162) 1.97410830444725 1.47702860780592 1.33654033105 0.181372727265498 1 FALSE Falcatimonas natans_nov_92.955% (SPN164) 2.76472986266206 1.18817938464389 2.32686233946963 0.0199725931935304 1 FALSE Butyricicoccus pullicaecorum_nov_94.382% (SPN166) 3.74167645867404 1.03348126526774 3.62045891340342 0 0 TRUE Eubacteriales_[G-3] bacterium_MOT-163_nov_93.679% (SPN169) 0.195075876681334 1.16565453963962 0.167353079362299 0 0 TRUE Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) 0.655465275428657 1.54284509034087 0.424841923231477 0.670951914004676 1 FALSE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_97.065% (SPN176) 0.588297236154589 0.86185694101578 0.682592676530777 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_94.796% (SPN182) -1.88320661315641 1.68959601640264 -1.11458987525668 0 0 TRUE Muricomes intestini_nov_94.331% (SPN187) 0.134703701390474 0.989513087120197 0.136131298457613 0 0 TRUE Gracilibacter thermotolerans_nov_88.315% (SPN192) 3.13847345584144 0.815127719641341 3.85028429314412 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) 0.779057373378438 1.65243688094504 0.471459686213788 0.637312501821658 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_93.919% (SPN195) -0.0723665545718877 1.29869865891489 -0.0557223602836033 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.291% (SPN197) 0.266157558239929 1.00333655919785 0.265272460970341 0 0 TRUE Oscillibacter ruminantium_nov_93.919% (SPN198) 0.221532915314768 1.04463642946006 0.212067001558878 0 0 TRUE Acetatifactor muris_nov_92.551% (SPN2) 1.90258716613153 1.56581719167882 1.21507617635213 0.224337038986268 1 FALSE Alistipes sp._MOT-127_nov_91.775% (SPN200) 3.22152121539275 1.13964411904384 2.82677825608893 0 0 TRUE Kineothrix alysoides_nov_97.059% (SPN204) -1.8105395121668 1.63244622081634 -1.10909596229234 0 0 TRUE Christensenella hongkongensis_nov_86.353% (SPN21) 0.309797541958998 1.20407424899779 0.25729106175708 0.79695409194149 1 FALSE Algimonas porphyrae_nov_83.596% (SPN215) 0.475630683202342 1.17442921761529 0.404988803129511 0.685485741329851 1 FALSE Duncaniella freteri_nov_90.456% (SPN216) 1.1119484788839 1.67137132952778 0.665291105117895 0.505864318692698 1 FALSE Saccharofermentans acetigenes_nov_88.063% (SPN219) 0.3126489569871 1.0110560083676 0.309230106343848 0 0 TRUE Christensenella massiliensis_nov_87.416% (SPN221) 0.321783663069599 0.889954327496684 0.361573232611533 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.136% (SPN226) 0.155328174307721 0.979523351343677 0.158575264279965 0 0 TRUE Peptococcus sp._HMT_168_nov_89.979% (SPN25) 1.85827051291489 0.760744435364265 2.44270010601537 0.0145778454404186 1 FALSE Kineothrix alysoides_nov_93.682% (SPN26) -0.456383709212134 1.46282629112025 -0.311987631055379 0 0 TRUE Roseburia faecis_nov_97.964% (SPN38) -3.12847979826554 1.15401657251649 -2.71094876171792 0 0 TRUE Duncaniella freteri_nov_93.103% (SPN49) 4.37374499590121 1.6560147540894 2.64112682879219 0.00826307801670206 0.867623191753716 FALSE Eubacterium ventriosum_nov_96.825% (SPN53) 1.64564045651788 1.00593737453124 1.63592734317555 0.101854794571796 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 2.48821912351746 1.3977498325353 1.78016055920695 0.0750496880459871 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.441% (SPN63) 3.61912785724901 1.41577420099938 2.55628888751774 0 0 TRUE Lacrimispora xylanolytica_nov_97.285% (SPN72) 2.72159323030845 1.51728090064037 1.79373063297626 0.0728561734337425 1 FALSE Culturomica massiliensis_nov_93.709% (SPN78) -2.33212240429778 0.977173537321897 -2.38660004106266 0.0170049800445427 1 FALSE Kineothrix alysoides_nov_95.928% (SPN79) 3.24121222838522 1.67459192608661 1.93552362094548 0.0529260729285621 1 FALSE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) 4.57982262216281 1.03584417087261 4.42134323959625 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_96.847% (SPN81) 0.0631436736422999 1.13045431026353 0.0558569002471052 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) -1.06328357818888 1.44683090205034 -0.734905217107313 0.462397220827684 1 FALSE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_92.174% (SPN83) 1.55590083200802 1.55536290729365 1.00034585157705 0.317143164892484 1 FALSE Lachnoclostridium pacaense_nov_96.825% (SPN84) -0.333115227828255 1.592988404737 -0.20911340398818 0.834359711150669 1 FALSE Eubacterium coprostanoligenes_nov_95.485% (SPN86) -2.99867968226109 0.999092513751937 -3.00140341458471 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.974% (SPN87) -0.313908113013857 1.35010167385305 -0.23250701713301 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) 1.63439791474501 1.71126047867722 0.955084240599288 0.339535097870126 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) -2.08755106739799 1.14250992026921 -1.82716231199647 0.0676753685865014 1 FALSE Pseudoflavonifractor capillosus_nov_95.721% (SPN90) -1.38564355274575 1.16255296055249 -1.19189714341034 0.23330157841664 1 FALSE Anaerotignum lactatifermentans_nov_95.270% (SPN91) 1.85431534172245 1.4737970701563 1.25818905415913 0.208323392597804 1 FALSE Alistipes timonensis_nov_97.831% (SPN94) -1.1857392122104 1.43763241735495 -0.824786084326061 0.409493048420931 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) -0.870198805967831 1.40272817753093 -0.620361677983504 0.535019696456635 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_94.157% (SPN96) -2.63944229037367 1.04417704968582 -2.52777274808697 0 0 TRUE Alistipes senegalensis_nov_95.228% (SPN97) -2.16341588189919 1.22735663988374 -1.76266279221345 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) -0.270761046628663 1.40894154068275 -0.192173371861444 0.847606403312047 1 FALSE Lachnospiraceae_[G-11] bacterium_MOT-177_nov_97.523% (SPN99) -0.233812022585866 1.33972740077053 -0.17452208744211 0 0 TRUE Clostridium disporicum_saudiense (SPP1) -0.0819622004731779 1.20941597711123 -0.0677700659031724 0 0 TRUE Bacteroides acidifaciens_acidofaciens (SPP3) 1.30996591944148 1.20126549990195 1.09048825555083 0.275498123975564 1 FALSE Lachnospiraceae_[G-12] bacterium_MOT-179_bacterium_MOT-180 (SPP4) -1.06581958866797 1.29378123041162 -0.823802018157949 0 0 TRUE multigenus multispecies_sppn10_2_nov_95.918% (SPPN10) -1.17456837839072 1.42685844194562 -0.823184938226323 0.410402832700327 1 FALSE Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) 1.94211903536099 1.78840202326544 1.08595215734261 0.277500159476501 1 FALSE multigenus multispecies_sppn13_5_nov_94.570% (SPPN13) -0.330425528713689 1.39018173224709 -0.237685132129876 0 0 TRUE multigenus multispecies_sppn17_2_nov_95.928% (SPPN17) 0.882140810453677 1.42645757474129 0.618413632535596 0.536302713733649 1 FALSE Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) -3.55735045774126 0.854230997314164 -4.16438933839456 3.12186996838756e-05 0.00380868136143282 TRUE Lachnospiraceae_[G-11] multispecies_sppn4_2_nov_96.847% (SPPN4) 2.95906185184788 1.56305847373239 1.89312293914507 0.0583415222563723 1 FALSE multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) 0.998725128420613 1.74427782287835 0.572572279095166 0.566934333624856 1 FALSE Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 5.63909875833573 1.2545773761732 4.4948194232041 6.96290098033319e-06 0.000870362622541649 TRUE multigenus multispecies_sppn7_2_nov_92.777% (SPPN7) 1.89730082635103 1.40836925074321 1.34716149571556 0.177928225907196 1 FALSE multigenus multispecies_sppn9_2_nov_93.002% (SPPN9) -2.99656784914039 0.946255664902763 -3.16676344489659 0.00154145653403735 0.172643131812183 FALSE