ComparisonHamlet + Amoxicillin...1 ComparisonHamlet + Amoxicillin...2 ComparisonHamlet + Amoxicillin...3 ComparisonHamlet + Amoxicillin...4 ComparisonHamlet + Amoxicillin...5 ComparisonHamlet + Amoxicillin...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Lachnospiraceae_[G-11] bacterium_MOT-178 (SP1) 0.61834725099151 1.68537174396582 0.366890719038927 0.713700534580546 1 FALSE Alistipes sp._MOT-127 (SP10) 2.35566857263491 1.02536049865582 2.29740523037804 0.0215956636841723 1 FALSE Turicimonas muris (SP11) 2.80466910125153 1.45213764209186 1.93140720270242 0.0534327151298514 1 FALSE Bacteroides acidofaciens (SP19) 1.0787861307611 1.62312610086018 0.664634824237868 0.506284089822298 1 FALSE Bacteroides caecimuris (SP2) 3.08815451975544 1.28042201246663 2.41182554633403 0.0158728743715219 1 FALSE Blautia caecimuris (SP20) 3.18252057924841 1.9645834311925 1.61994676770567 0.105243712345173 1 FALSE Prevotella sp._MOT-128 (SP22) -0.503976813422778 1.63020324564247 -0.309149681041248 0.757207668866759 1 FALSE Roseburia faecis (SP27) 1.43416451685922 1.15850876533208 1.23794015183659 0.21573825288375 1 FALSE Flavonifractor plautii (SP28) 3.25697815435319 1.5097247092656 2.15733248211691 0.0309797678450176 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) -0.279768655529284 1.36822987476798 -0.204474891747797 0.837982410977508 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183 (SP3) 0.232018119285315 1.48514977621785 0.156225400966751 0.87585535547621 1 FALSE Robinsoniella peoriensis (SP30) 3.56306990964355 1.56056934373831 2.28318589234126 0 0 TRUE Eubacteriales_[G-1] bacterium_MOT-158 (SP38) -0.497289183080102 1.17380417771984 -0.423656000310126 0 0 TRUE Bacteroides stercorirosoris (SP4) 0.360138897007629 1.4059068053059 0.256161287254933 0.797826299803625 1 FALSE Muribaculum intestinale (SP5) 3.48321215621961 1.56490730255954 2.22582650775706 0.0260258045426929 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) -1.4639308071422 1.36274380707511 -1.07425240132573 0.282709572151427 1 FALSE Parabacteroides goldsteinii (SP8) 2.65029446735323 1.10273375389636 2.40338563863559 0.0162440469740394 1 FALSE Akkermansia muciniphila (SP9) -1.33781690020277 1.71604239812957 -0.779594316353107 0.435629702424931 1 FALSE Anaerotruncus rubiinfantis_nov_92.760% (SPN103) 1.50092473750139 1.54291290553732 0.972786430209218 0.330659458311199 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.991% (SPN104) -3.12345109385197 1.05662286537951 -2.95606994339471 0 0 TRUE Mediterraneibacter [Ruminococcus] gnavus_nov_93.424% (SPN105) 1.48456288177486 1.34882693282441 1.10063259091825 0.271056595167475 1 FALSE Alistipes putredinis_nov_95.887% (SPN106) -1.40533686107541 1.17874473864702 -1.19223171480577 0 0 TRUE Oscillibacter valericigenes_nov_95.260% (SPN107) 0.462496798610349 1.38412662155215 0.334143416800776 0.738271339146391 1 FALSE Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 3.47043252394369 1.49231052552626 2.3255431524346 0.0200429352809587 1 FALSE Saccharofermentans acetigenes_nov_88.764% (SPN111) -0.584593615256477 1.48572915841732 -0.393472532960999 0.69397050691814 1 FALSE Lacrimispora indolis_nov_90.724% (SPN112) 0.384604352994377 1.59417274951866 0.241256383983795 0.809356413076386 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) 0.510197208578587 1.31302076874435 0.388567508392492 0.69759610612014 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) 1.64176935160887 1.7528607490503 0.936622805033647 0.348952617076803 1 FALSE Alistipes putredinis_nov_95.879% (SPN119) 0.322915976602879 1.17425692009106 0.274996017547708 0.783319297938694 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) -2.40690645453851 0.957130717236537 -2.51471028062689 0.0119130236007029 1 FALSE Ruthenibacterium lactatiformans_nov_97.045% (SPN122) 0.763555535171365 1.38250458738753 0.5522987353078 0.580743696945926 1 FALSE Lachnospiraceae_[G-11] bacterium_MOT-178_nov_97.978% (SPN124) 1.40278743113687 1.13512687340187 1.23579792180661 0.216533687678721 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-185_nov_96.599% (SPN126) -0.420013662823974 1.20540584399199 -0.348441701122832 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.022% (SPN127) 1.63624660365212 1.52902678042872 1.07012292040649 0.28456398343296 1 FALSE Faecalicatena orotica_nov_95.238% (SPN128) -0.596543194534593 1.22790721799597 -0.485821066764467 0 0 TRUE Enterocloster asparagiformis_nov_94.344% (SPN129) 1.68381619824925 1.07393708907627 1.56789090848661 0.116906593893476 1 FALSE Prevotellamassilia timonensis_nov_94.168% (SPN13) -0.198793453352179 1.23221927201868 -0.161329608996057 0.871833804092847 1 FALSE Eisenbergiella massiliensis_nov_96.599% (SPN130) -0.275049795153991 1.40038878470418 -0.196409595790995 0.844289586182084 1 FALSE Neglectibacter timonensis_nov_97.500% (SPN131) -1.20732358087223 1.0999629234901 -1.09760388744875 0 0 TRUE Mailhella massiliensis_nov_92.094% (SPN132) 0.210680227286343 1.15912731946541 0.181757623816086 0.855772941791284 1 FALSE Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 1.66469952217361 1.2829875977262 1.29751801585916 0.194453010402663 1 FALSE Eubacterium coprostanoligenes_nov_95.701% (SPN137) 1.60652980060748 1.10236245723096 1.45735169958794 0.145019322553553 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) -0.590189556373199 1.40168939017881 -0.421055877649121 0.673714279464071 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183_nov_95.425% (SPN140) 1.33164520361097 1.07442415825506 1.2394036315915 0.2151960572197 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.281% (SPN141) 0.493673385518438 1.23198767881619 0.400712924331196 0.688631494200711 1 FALSE Petrocella atlantisensis_nov_87.810% (SPN142) 0.518040249122643 1.2300764156149 0.421144769988687 0.673649371399635 1 FALSE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_96.396% (SPN143) 0.725601338489257 1.17434877515183 0.617875501590609 0.536657409068644 1 FALSE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 1.81573520168194 1.80628020969155 1.00523451009409 0.31478394145379 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.208% (SPN146) 1.49360752930933 1.408955354493 1.06008151681058 0.289107515732155 1 FALSE Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) -0.149208819031575 1.02170131416655 -0.146039568475344 0 0 TRUE Ruminococcus albus_nov_92.500% (SPN149) -0.121453029193745 1.03685437594539 -0.117136053057601 0 0 TRUE Alistipes putredinis_nov_96.529% (SPN150) 0.152536269260014 0.898029926240532 0.169856554668043 0.865122948889205 1 FALSE Rhodospirillum rubrum_nov_88.036% (SPN154) -1.14638845708839 0.909643446077838 -1.2602613277008 0 0 TRUE Anaerotignum lactatifermentans_nov_97.523% (SPN157) -0.634266221155076 1.27715807131809 -0.496623116119435 0.619454848872279 1 FALSE Phocea massiliensis_nov_95.682% (SPN158) -0.571895894592493 1.3614206680828 -0.420072875342679 0.674432217226402 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 3.27318384344383 1.08505456973635 3.01660758337636 0 0 TRUE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_96.606% (SPN161) 0.56756074002247 1.26266349236144 0.449494852314938 0.653074720683192 1 FALSE Muribaculum intestinale_nov_93.737% (SPN162) 0.0142194239975668 1.29087137854771 0.0110153685594644 0.991211185231915 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093_nov_90.337% (SPN163) -0.266010494582494 1.12386317184757 -0.236692954485898 0 0 TRUE Falcatimonas natans_nov_92.955% (SPN164) 3.1726046573982 1.02678582146178 3.08984073512191 0 0 TRUE Butyricicoccus pullicaecorum_nov_94.382% (SPN166) 3.46716049303983 1.02995354137371 3.36632707570041 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.396% (SPN168) 1.47502098404426 1.19210903290902 1.23732053304291 0.215968107881061 1 FALSE Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) -0.85882890891751 1.67691832326048 -0.512147131440287 0.608548040839975 1 FALSE Gracilibacter thermotolerans_nov_88.315% (SPN192) 2.19912681577985 0.986246811388422 2.22979358755437 0.0257611493080748 1 FALSE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) 0.164259858761066 1.84079736862592 0.0892329930282762 0.928896745309576 1 FALSE Acetatifactor muris_nov_92.551% (SPN2) -0.903189460395611 1.89862681401648 -0.475706681127581 0.634283360454538 1 FALSE Alistipes sp._MOT-127_nov_91.775% (SPN200) 2.94700524975854 1.1742203468515 2.5097548834514 0 0 TRUE Clostridiales_[F-1][G-1] bacterium_HMT_093_nov_86.323% (SPN202) -0.0440805609996227 1.06297179288593 -0.0414691728366052 0 0 TRUE Muribaculum intestinale_nov_92.688% (SPN212) 1.92316584108599 1.24389784066987 1.54608021511664 0.122085196365543 1 FALSE Algimonas porphyrae_nov_83.596% (SPN215) 1.43710982290162 1.09812688087171 1.30869196259072 0.190638715381397 1 FALSE Duncaniella freteri_nov_90.456% (SPN216) 1.48671447974008 1.72344670301613 0.862640241289879 0.388335297907079 1 FALSE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.136% (SPN226) -0.164736680493101 0.999917131481932 -0.164750333109057 0 0 TRUE Parabacteroides goldsteinii_nov_93.074% (SPN27) 1.63316035787425 0.912303563738066 1.79015014605725 0.073429777127957 1 FALSE Duncaniella freteri_nov_93.103% (SPN49) 2.68538313550911 2.02066011634107 1.32896329956356 0.183860078298583 1 FALSE Oscillospiraceae_[G-1] bacterium_MOT-147_nov_95.937% (SPN6) 1.58732843340629 0.800737074675789 1.98233413139886 0.0474418563851947 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 2.97554017151559 1.43906120033379 2.06769536335592 0.0386686781961783 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.441% (SPN63) 3.3446118916148 1.44594833251602 2.3130922567579 0 0 TRUE Lacrimispora xylanolytica_nov_97.285% (SPN72) -1.63479901488807 1.07280716561374 -1.5238516923522 0.127545763197025 1 FALSE Hydrogenoanaerobacterium saccharovorans_nov_93.636% (SPN74) 1.56053812099886 1.35351512839577 1.15295210837315 0.248930042267252 1 FALSE Culturomica massiliensis_nov_93.709% (SPN78) 0.0625123241410437 1.23426301897801 0.050647490186334 0.959606419663108 1 FALSE Kineothrix alysoides_nov_95.928% (SPN79) -2.0513389565749 1.83511729360634 -1.11782443755605 0.263641982226305 1 FALSE Gracilibacter thermotolerans_nov_87.668% (SPN8) 1.6363967055171 0.877607104675588 1.86461196223109 0.0622358149000411 1 FALSE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) -1.83609729264315 1.07430613583515 -1.70910062913845 0.087432311078287 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) -0.63933930581891 1.4135632468168 -0.452289140410688 0.651060698195776 1 FALSE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_92.174% (SPN83) 2.21171999701324 1.44447915379683 1.5311539742195 0.12573134286462 1 FALSE Lachnoclostridium pacaense_nov_96.825% (SPN84) 1.28954639814439 1.53732736150603 0.838823552116512 0.401568332165317 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.462% (SPN85) -1.59744751033223 1.46247801643031 -1.09228822066766 0 0 TRUE Eubacterium coprostanoligenes_nov_95.485% (SPN86) -1.54985892818264 1.4319164159708 -1.08236689718504 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.974% (SPN87) -3.59633359989618 0.915287427542728 -3.92918496602893 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) 1.20721676283993 1.74743142147494 0.690852154770664 0.489658456057195 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) 0.254935853297307 1.21761641919982 0.209372877432814 0.834157164210446 1 FALSE Pseudoflavonifractor capillosus_nov_95.721% (SPN90) 0.664942130782976 1.56628699193514 0.424534031251478 0.671176392005898 1 FALSE Anaerotignum lactatifermentans_nov_95.270% (SPN91) 0.911482218292774 1.51579982855313 0.601320966741898 0.547626227304657 1 FALSE Alistipes timonensis_nov_97.831% (SPN94) 0.499268106820265 1.27742997733207 0.390837944685621 0.695917025539306 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) -3.06677886994016 0.972170679733802 -3.15456836322188 0.00160735715621039 0.173594572870722 FALSE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) 0.444473091888898 1.37589564190987 0.323042735473693 0.746662877420142 1 FALSE Bacteroides acidifaciens_acidofaciens (SPP3) -1.3919716819052 1.44675654252927 -0.96213263322916 0.335982983558484 1 FALSE Lachnospiraceae_[G-12] bacterium_MOT-179_bacterium_MOT-180 (SPP4) -0.486557393464353 1.1723000653927 -0.415045096241092 0 0 TRUE multigenus multispecies_sppn10_2_nov_95.918% (SPPN10) 1.42912060757666 1.181110074865 1.20998087984306 0.226286229765361 1 FALSE Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) 2.53453409932482 1.72025694335951 1.47334623999546 0.140657698340571 1 FALSE multigenus multispecies_sppn14_2_nov_82.889% (SPPN14) 1.70099972459761 1.29351751715931 1.3150187005841 0.188503617647334 1 FALSE Eubacteriales_[G-1] multispecies_sppn15_2_nov_97.511% (SPPN15) -0.21253802711786 1.32622815942197 -0.160257513466231 0.872678225584253 1 FALSE multigenus multispecies_sppn17_2_nov_95.928% (SPPN17) 1.5604850197455 1.10267443704137 1.41518200415754 0.157015139475411 1 FALSE Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) 0.264840866678087 1.36307269525332 0.194296949532004 0.845943374044039 1 FALSE multigenus multispecies_sppn22_2_nov_95.465% (SPPN22) -0.259902092979357 1.10149145774093 -0.235954705915193 0 0 TRUE Lachnospiraceae_[G-11] multispecies_sppn4_2_nov_96.847% (SPPN4) 1.67070412897653 1.68488267754251 0.991584845191325 0.321400084988162 1 FALSE multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) 2.79681313250233 1.37377467896421 2.03586015620193 0.0417643997452893 1 FALSE Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 2.51518836506135 1.1687945943263 2.15195071680762 0.0314012361402838 1 FALSE multigenus multispecies_sppn7_2_nov_92.777% (SPPN7) 0.337442153996643 1.75666654781438 0.192092320774529 0.847669890034595 1 FALSE multigenus multispecies_sppn9_2_nov_93.002% (SPPN9) 1.20281383373187 1.45212808011994 0.828311118143603 0.407494327936447 1 FALSE